Wall clock time and date at job start Tue Mar 31 2020 00:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34514 * 125.78875 * 2 1 4 4 C 1.41386 * 106.83997 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.84110 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.78869 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47460 * 89.99945 * 6 5 4 8 8 O 1.21290 * 120.00051 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00325 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99829 * 0.02562 * 9 7 6 11 11 C 1.46504 * 120.00089 * 180.02562 * 9 7 6 12 12 C 1.53495 * 114.20492 * 120.00483 * 11 9 7 13 13 N 1.47064 * 87.98647 * 87.51761 * 12 11 9 14 14 C 1.36929 * 136.05710 * 207.07951 * 13 12 11 15 15 H 1.07999 * 119.99903 * 6.59853 * 14 13 12 16 16 C 1.38814 * 120.00235 * 186.58664 * 14 13 12 17 17 N 1.31624 * 119.99708 * 6.45052 * 16 14 13 18 18 Si 1.86801 * 120.00252 * 186.44323 * 16 14 13 19 19 H 1.48498 * 109.47005 * 265.02404 * 18 16 14 20 20 H 1.48497 * 109.46829 * 25.02180 * 18 16 14 21 21 H 1.48501 * 109.47055 * 145.02388 * 18 16 14 22 22 C 1.47067 * 87.88549 * 27.33957 * 13 12 11 23 23 O 1.34301 * 108.42245 * 0.26601 * 5 4 3 24 24 H 1.09003 * 109.47446 * 90.00303 * 1 2 3 25 25 H 1.09004 * 109.47205 * 209.99842 * 1 2 3 26 26 H 1.09001 * 109.47534 * 330.00066 * 1 2 3 27 27 H 1.07999 * 126.57906 * 0.05076 * 3 2 1 28 28 H 1.07997 * 126.57919 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47155 * 329.99707 * 6 5 4 30 30 H 1.09002 * 109.47235 * 210.00071 * 6 5 4 31 31 H 1.09001 * 109.47301 * 269.99894 * 10 9 7 32 32 H 1.09010 * 109.46951 * 29.99895 * 10 9 7 33 33 H 1.08999 * 109.47178 * 149.99412 * 10 9 7 34 34 H 1.09002 * 113.27922 * 346.93508 * 11 9 7 35 35 H 1.08996 * 113.46596 * 332.73658 * 12 11 9 36 36 H 1.09007 * 113.51449 * 202.30908 * 12 11 9 37 37 H 0.97002 * 119.99801 * 179.97438 * 17 16 14 38 38 H 1.09005 * 113.46771 * 87.43754 * 22 13 12 39 39 H 1.09002 * 113.46911 * 217.87594 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.1671 -1.9461 1.4205 8 8 4.5450 -1.4622 2.3424 9 7 6.2125 -2.7604 1.6668 10 6 6.9636 -3.3453 0.5534 11 6 6.5976 -3.0606 3.0481 12 6 6.5388 -4.5516 3.4080 13 7 7.9184 -4.6723 2.9131 14 6 8.6889 -5.6676 2.3740 15 1 8.2464 -6.6231 2.1340 16 6 10.0388 -5.4484 2.1357 17 7 10.6063 -4.3329 2.5431 18 14 11.0498 -6.7367 1.2371 19 1 11.7291 -7.6113 2.2264 20 1 10.1568 -7.5582 0.3810 21 1 12.0673 -6.0647 0.3895 22 6 8.1082 -3.2553 3.2580 23 8 2.2924 -1.0894 -0.0056 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.9664 2.1204 0.0008 28 1 4.5211 1.2433 -0.0004 29 1 5.6039 -1.1588 -0.5143 30 1 4.5106 -2.5634 -0.5139 31 1 6.5184 -4.3012 0.2771 32 1 6.9320 -2.6692 -0.3011 33 1 7.9993 -3.5007 0.8556 34 1 6.1244 -2.4052 3.7794 35 1 5.8149 -5.1125 2.8169 36 1 6.4436 -4.7373 4.4779 37 1 11.5496 -4.1799 2.3769 38 1 8.4270 -3.0984 4.2886 39 1 8.7216 -2.7119 2.5392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042628646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:09 Heat of formation + Delta-G solvation = 29.099729 kcal Electronic energy + Delta-G solvation = -21610.525362 eV Core-core repulsion = 18328.742968 eV Total energy + Delta-G solvation = -3281.782394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.52406 -41.30970 -39.37269 -35.64241 -34.27583 -34.07405 -33.68952 -30.93016 -29.67472 -27.66066 -26.40296 -26.26127 -24.77551 -22.78800 -22.02108 -20.96043 -19.78736 -18.78474 -18.21526 -17.61844 -17.08025 -16.92179 -16.62521 -16.44182 -15.62453 -15.45312 -14.96570 -14.57929 -14.37678 -14.09696 -13.94882 -13.71953 -13.67488 -13.59035 -13.27184 -13.13786 -12.99446 -12.77082 -12.67329 -12.48899 -12.42523 -11.97835 -11.73045 -11.32444 -11.07076 -10.82554 -10.73223 -9.52127 -9.18780 -8.91711 -7.89941 -5.22138 0.72415 1.49621 1.50795 1.55987 1.59819 1.63779 1.92677 2.20366 2.48970 3.31964 3.44089 3.56355 3.68839 3.82499 4.01574 4.15549 4.23504 4.34131 4.42180 4.51001 4.52236 4.61467 4.73695 4.75132 4.83150 4.88216 4.90234 4.93854 5.06182 5.10141 5.17882 5.30312 5.33293 5.47063 5.67455 5.69821 5.88673 6.24708 6.51668 6.91546 7.13574 7.60601 8.60801 9.28251 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037661 B = 0.003600 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.298176 B = 7774.864355 C = 7947.663981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.028 4.028 3 C -0.225 4.225 4 C -0.205 4.205 5 C -0.015 4.015 6 C -0.050 4.050 7 C 0.512 3.488 8 O -0.581 6.581 9 N -0.578 5.578 10 C 0.086 3.914 11 C 0.102 3.898 12 C 0.107 3.893 13 N -0.623 5.623 14 C -0.221 4.221 15 H 0.083 0.917 16 C -0.056 4.056 17 N -0.950 5.950 18 Si 0.974 3.026 19 H -0.295 1.295 20 H -0.265 1.265 21 H -0.293 1.293 22 C 0.157 3.843 23 O -0.194 6.194 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.169 0.831 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.249 0.751 38 H 0.028 0.972 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.885 8.681 -8.907 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.244 4.244 4 C -0.225 4.225 5 C -0.065 4.065 6 C -0.089 4.089 7 C 0.302 3.698 8 O -0.462 6.462 9 N -0.308 5.308 10 C -0.056 4.056 11 C -0.004 4.004 12 C -0.020 4.020 13 N -0.349 5.349 14 C -0.349 4.349 15 H 0.101 0.899 16 C -0.250 4.250 17 N -0.598 5.598 18 Si 0.802 3.198 19 H -0.222 1.222 20 H -0.190 1.190 21 H -0.220 1.220 22 C 0.030 3.970 23 O -0.091 6.091 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.187 0.813 28 H 0.176 0.824 29 H 0.171 0.829 30 H 0.148 0.852 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.014 8.450 -8.582 20.037 hybrid contribution 1.300 -0.654 0.229 1.473 sum -14.714 7.797 -8.352 18.629 Atomic orbital electron populations 1.20474 0.82501 1.04973 1.04763 1.23236 0.95639 0.83776 1.05078 1.21878 0.92331 1.00467 1.09710 1.21832 0.99326 0.93813 1.07485 1.21822 0.82809 0.94596 1.07305 1.20203 0.93854 1.01134 0.93725 1.20964 0.79148 0.77701 0.92028 1.90672 1.54173 1.53592 1.47750 1.47405 1.30393 1.46367 1.06675 1.21882 0.97737 0.98206 0.87818 1.22405 0.97146 0.96779 0.84043 1.22922 0.87637 0.93971 0.97474 1.46032 1.10105 1.08453 1.70340 1.19214 0.90244 0.93428 1.32045 0.89892 1.25521 0.97139 0.99664 1.02689 1.70015 1.11093 1.27109 1.51605 0.85140 0.78449 0.78222 0.77966 1.22213 1.18980 1.22001 1.22285 0.91784 0.85650 0.97280 1.83909 1.16839 1.36399 1.71988 0.88371 0.90585 0.87506 0.81342 0.82431 0.82913 0.85170 0.92612 0.88626 0.91330 0.87961 0.93371 0.93161 0.94226 0.95399 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.42 71.23 0.74 -0.24 16 2 C -0.03 -0.65 7.32 24.83 0.18 -0.47 16 3 C -0.23 -5.20 10.81 22.19 0.24 -4.96 16 4 C -0.21 -5.29 10.81 22.19 0.24 -5.05 16 5 C -0.02 -0.43 5.81 24.83 0.14 -0.28 16 6 C -0.05 -1.20 4.79 29.10 0.14 -1.06 16 7 C 0.51 16.92 7.67 87.65 0.67 17.60 16 8 O -0.58 -23.70 15.54 -3.06 -0.05 -23.75 16 9 N -0.58 -19.99 3.12 -821.39 -2.56 -22.55 16 10 C 0.09 2.73 9.34 127.77 1.19 3.92 16 11 C 0.10 3.99 4.69 45.55 0.21 4.21 16 12 C 0.11 4.36 8.31 83.18 0.69 5.05 16 13 N -0.62 -30.23 2.47 -738.03 -1.82 -32.06 16 14 C -0.22 -11.64 10.34 84.04 0.87 -10.77 16 15 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 16 C -0.06 -3.03 5.50 84.86 0.47 -2.56 16 17 N -0.95 -54.51 11.81 21.65 0.26 -54.25 16 18 Si 0.97 43.41 29.56 68.60 2.03 45.44 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 22 C 0.16 7.23 6.25 83.27 0.52 7.75 16 23 O -0.19 -5.64 10.65 -2.50 -0.03 -5.66 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 28 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.15 2.65 7.40 -2.39 -0.02 2.63 16 30 H 0.13 2.56 8.11 -2.39 -0.02 2.54 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 2.17 6.44 -2.38 -0.02 2.16 16 33 H 0.07 2.82 5.38 -2.39 -0.01 2.81 16 34 H 0.10 3.97 7.29 -2.39 -0.02 3.95 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.04 2.26 6.71 -2.39 -0.02 2.25 16 Total: -1.00 -70.33 327.11 5.19 -65.14 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.05 Total: 14.56 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.31 Total: 13.13 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.13 Total: -108.86 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.07 Total: -29.41 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.33 5.19 -65.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042628646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.240 kcal (2) G-P(sol) polarization free energy of solvation -70.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds