Wall clock time and date at job start Tue Mar 31 2020 01:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41379 * 126.57870 * 2 1 4 4 C 1.34517 * 106.83979 * 179.97438 * 3 2 1 5 5 O 1.34311 * 108.41967 * 359.73881 * 4 3 2 6 6 C 1.34305 * 109.47324 * 0.43646 * 5 4 3 7 7 C 1.50697 * 125.78825 * 179.82870 * 6 5 4 8 8 C 1.50700 * 109.47020 * 269.69243 * 7 6 5 9 9 O 1.21283 * 119.99918 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99890 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00485 * 359.97438 * 10 8 7 12 12 C 1.46508 * 119.99979 * 179.97438 * 10 8 7 13 13 C 1.53496 * 114.20706 * 239.99886 * 12 10 8 14 14 N 1.47062 * 87.98485 * 220.14769 * 13 12 10 15 15 C 1.36939 * 136.05593 * 207.08750 * 14 13 12 16 16 H 1.08008 * 119.99868 * 7.82597 * 15 14 13 17 17 C 1.38808 * 120.00203 * 187.82575 * 15 14 13 18 18 N 1.31618 * 119.99998 * 195.17052 * 17 15 14 19 19 Si 1.86797 * 119.99840 * 15.16580 * 17 15 14 20 20 H 1.48503 * 109.47450 * 270.00422 * 19 17 15 21 21 H 1.48503 * 109.47360 * 30.00092 * 19 17 15 22 22 H 1.48498 * 109.47360 * 150.00270 * 19 17 15 23 23 C 1.47059 * 87.88616 * 27.34176 * 14 13 12 24 24 H 1.09004 * 109.47192 * 270.03872 * 1 2 3 25 25 H 1.08998 * 109.46891 * 30.03982 * 1 2 3 26 26 H 1.08998 * 109.47112 * 150.03899 * 1 2 3 27 27 H 1.08002 * 126.58351 * 359.97438 * 3 2 1 28 28 H 1.07997 * 125.78869 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47685 * 149.68848 * 7 6 5 30 30 H 1.09000 * 109.47122 * 29.69140 * 7 6 5 31 31 H 1.08994 * 109.47345 * 270.00261 * 11 10 8 32 32 H 1.09001 * 109.46733 * 30.00327 * 11 10 8 33 33 H 1.08996 * 109.47534 * 149.99922 * 11 10 8 34 34 H 1.09001 * 113.27729 * 13.06740 * 12 10 8 35 35 H 1.09008 * 113.46447 * 105.36204 * 13 12 10 36 36 H 1.08996 * 113.51824 * 334.94014 * 13 12 10 37 37 H 0.96995 * 120.00365 * 354.90363 * 18 17 15 38 38 H 1.08997 * 113.47135 * 87.43718 * 23 14 13 39 39 H 1.09007 * 113.47198 * 217.88025 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5848 -0.6617 0.0067 6 6 2.3086 -1.0802 0.0005 7 6 1.8521 -2.5164 0.0007 8 6 1.7005 -2.9955 -1.4200 9 8 1.9392 -2.2444 -2.3420 10 7 1.2997 -4.2585 -1.6661 11 6 1.0120 -5.1659 -0.5526 12 6 1.1518 -4.7241 -3.0474 13 6 -0.2670 -5.1865 -3.4071 14 7 0.3410 -6.2910 -4.1643 15 6 -0.0126 -7.0609 -5.2402 16 1 -0.8971 -6.8181 -5.8106 17 6 0.7657 -8.1532 -5.5977 18 7 0.6137 -8.7108 -6.7802 19 14 2.0290 -8.8317 -4.4006 20 1 3.3303 -8.1490 -4.6143 21 1 1.5689 -8.5954 -3.0085 22 1 2.1922 -10.2902 -4.6270 23 6 1.4927 -6.2091 -3.2536 24 1 -0.3634 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5144 26 1 -0.3633 -0.8903 -0.5132 27 1 2.0367 2.1690 -0.0004 28 1 4.5060 1.2923 0.0011 29 1 0.8937 -2.5930 0.5142 30 1 2.5900 -3.1321 0.5150 31 1 1.9201 -5.7017 -0.2765 32 1 0.6555 -4.5907 0.3019 33 1 0.2462 -5.8803 -0.8546 34 1 1.6021 -4.0530 -3.7787 35 1 -0.8089 -4.4775 -4.0332 36 1 -0.8477 -5.5181 -2.5464 37 1 -0.0914 -8.4066 -7.3728 38 1 1.3768 -6.8103 -2.3519 39 1 2.4502 -6.3714 -3.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043816320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:21 Heat of formation + Delta-G solvation = 48.612819 kcal Electronic energy + Delta-G solvation = -21647.827246 eV Core-core repulsion = 18366.891003 eV Total energy + Delta-G solvation = -3280.936243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.68142 -40.07387 -38.11179 -34.74040 -34.35904 -32.48179 -31.96102 -29.13641 -27.98223 -26.88660 -26.13242 -25.32983 -22.84795 -21.56315 -20.41955 -19.51469 -18.81546 -17.62139 -17.25179 -17.03287 -16.27732 -15.80686 -15.71338 -14.98697 -14.62385 -14.01025 -13.71238 -13.44188 -13.32740 -13.23171 -13.06304 -12.85324 -12.59644 -12.33598 -12.21781 -12.03731 -11.94808 -11.70508 -11.49517 -11.21727 -10.65636 -10.23640 -9.80094 -9.69791 -9.67999 -9.27066 -8.75915 -8.42280 -8.36224 -7.23703 -6.35068 -3.27700 1.61242 2.46720 2.64079 2.83866 3.18092 3.38810 3.43913 3.59197 4.41781 4.55962 4.56319 4.75642 4.80480 4.82713 4.95351 5.03648 5.08894 5.17955 5.34268 5.35104 5.48025 5.49281 5.61807 5.66804 5.72861 5.78917 5.85666 5.93170 6.09655 6.12133 6.26325 6.35040 6.43956 6.46650 6.93696 7.05062 7.06616 7.49149 8.20321 8.23222 8.93160 9.45726 10.30509 11.15112 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035520 B = 0.003804 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.093753 B = 7358.784485 C = 7517.558592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.166 4.166 3 C -0.211 4.211 4 C -0.038 4.038 5 O -0.171 6.171 6 C 0.006 3.994 7 C -0.060 4.060 8 C 0.513 3.487 9 O -0.529 6.529 10 N -0.601 5.601 11 C 0.071 3.929 12 C 0.102 3.898 13 C 0.107 3.893 14 N -0.617 5.617 15 C -0.306 4.306 16 H 0.084 0.916 17 C -0.022 4.022 18 N -0.929 5.929 19 Si 1.063 2.937 20 H -0.292 1.292 21 H -0.282 1.282 22 H -0.294 1.294 23 C 0.093 3.907 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.146 0.854 28 H 0.201 0.799 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.050 0.950 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 15.524 20.050 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.168 4.168 3 C -0.230 4.230 4 C -0.106 4.106 5 O -0.067 6.067 6 C -0.045 4.045 7 C -0.100 4.100 8 C 0.299 3.701 9 O -0.405 6.405 10 N -0.334 5.334 11 C -0.072 4.072 12 C -0.002 4.002 13 C -0.020 4.020 14 N -0.344 5.344 15 C -0.432 4.432 16 H 0.101 0.899 17 C -0.221 4.221 18 N -0.570 5.570 19 Si 0.894 3.106 20 H -0.220 1.220 21 H -0.209 1.209 22 H -0.221 1.221 23 C -0.034 4.034 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.164 0.836 28 H 0.218 0.782 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.775 14.420 19.479 24.528 hybrid contribution -1.365 1.204 -0.110 1.823 sum 2.410 15.624 19.369 25.002 Atomic orbital electron populations 1.20176 0.89339 1.02872 1.01623 1.20145 0.97025 0.92003 1.07600 1.21666 0.92657 0.99686 1.09026 1.23924 0.99689 0.80584 1.06395 1.83985 1.28646 1.22797 1.71285 1.21301 0.81187 0.95045 1.06942 1.20148 1.03834 0.89585 0.96387 1.20350 0.77231 0.81779 0.90691 1.90737 1.49465 1.54223 1.46064 1.47894 1.66506 1.11396 1.07589 1.21886 1.01956 0.94614 0.88769 1.23574 0.98988 0.96126 0.81529 1.22779 0.94030 0.90783 0.94416 1.45876 1.17127 1.40452 1.30993 1.20109 1.13156 1.07987 1.01978 0.89860 1.25803 1.02048 0.94611 0.99675 1.70893 1.32736 1.46975 1.06438 0.83769 0.75510 0.76186 0.75141 1.22007 1.20880 1.22133 1.23110 0.93623 0.92495 0.94129 0.91589 0.91469 0.91727 0.83616 0.78210 0.86108 0.87138 0.92173 0.91184 0.90069 0.85774 0.93272 0.94479 0.92725 0.93230 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.99 36.01 0.36 -0.45 16 2 C -0.17 -2.00 6.16 -104.74 -0.65 -2.65 16 3 C -0.21 -2.30 10.87 -39.70 -0.43 -2.73 16 4 C -0.04 -0.40 12.09 29.42 0.36 -0.05 16 5 O -0.17 -2.26 10.65 5.68 0.06 -2.20 16 6 C 0.01 0.07 5.81 -35.63 -0.21 -0.13 16 7 C -0.06 -0.63 4.41 -29.04 -0.13 -0.75 16 8 C 0.51 7.57 7.67 -10.99 -0.08 7.49 16 9 O -0.53 -10.18 15.54 5.55 0.09 -10.09 16 10 N -0.60 -8.67 3.12 -173.56 -0.54 -9.21 16 11 C 0.07 0.73 8.92 59.85 0.53 1.26 16 12 C 0.10 1.88 4.57 -67.68 -0.31 1.57 16 13 C 0.11 2.14 8.24 -8.52 -0.07 2.07 16 14 N -0.62 -15.19 3.62 -184.65 -0.67 -15.86 16 15 C -0.31 -8.85 11.03 -15.06 -0.17 -9.01 16 16 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 17 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 18 N -0.93 -29.34 13.70 55.49 0.76 -28.58 16 19 Si 1.06 26.36 25.50 -169.99 -4.34 22.03 16 20 H -0.29 -7.04 6.97 56.52 0.39 -6.65 16 21 H -0.28 -6.35 5.66 56.52 0.32 -6.03 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 C 0.09 1.94 5.03 -8.39 -0.04 1.90 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.66 7.78 -51.93 -0.40 0.25 16 27 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 0.90 7.02 -51.93 -0.36 0.54 16 30 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 33 H 0.08 0.91 6.18 -51.93 -0.32 0.59 16 34 H 0.12 2.53 7.29 -51.93 -0.38 2.16 16 35 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.04 0.68 6.97 -51.93 -0.36 0.32 16 37 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 38 H 0.05 0.96 5.45 -51.93 -0.28 0.68 16 39 H 0.06 1.23 6.22 -51.93 -0.32 0.91 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -36.15 319.09 -6.15 -42.30 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.39 Total: -0.96 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.93 Total: -2.23 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.45 Total: -53.65 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.15 Total: -12.29 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -4.34 Total: 22.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.15 -6.15 -42.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043816320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.917 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds