Wall clock time and date at job start Tue Mar 31 2020 00:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.46141 * 2 1 4 4 C 1.34777 * 120.00196 * 60.02937 * 3 2 1 5 5 O 1.21694 * 120.00042 * 359.97438 * 4 3 2 6 6 C 1.46659 * 120.00063 * 180.02562 * 4 3 2 7 7 C 1.36550 * 125.98589 * 179.97438 * 6 4 3 8 8 C 1.40365 * 106.70436 * 180.28067 * 7 6 4 9 9 C 1.35131 * 107.11660 * 359.57628 * 8 7 6 10 10 O 1.33935 * 108.76634 * 0.43139 * 9 8 7 11 11 C 1.53042 * 109.44796 * 119.96931 * 2 1 3 12 12 C 1.53193 * 109.30943 * 181.37889 * 11 2 1 13 13 N 1.46921 * 108.77531 * 305.35742 * 12 11 2 14 14 C 1.36938 * 120.63612 * 233.63390 * 13 12 11 15 15 H 1.07993 * 119.99637 * 27.66920 * 14 13 12 16 16 C 1.38814 * 119.99925 * 207.66775 * 14 13 12 17 17 N 1.31612 * 120.00208 * 17.36181 * 16 14 13 18 18 Si 1.86803 * 119.99662 * 197.36133 * 16 14 13 19 19 H 1.48497 * 109.47153 * 59.99744 * 18 16 14 20 20 H 1.48499 * 109.47276 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47041 * 299.99885 * 18 16 14 22 22 C 1.46932 * 118.73708 * 53.61573 * 13 12 11 23 23 C 1.53041 * 109.45831 * 240.02619 * 2 1 3 24 24 H 1.08999 * 109.47095 * 59.99722 * 1 2 3 25 25 H 1.08996 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46613 * 299.99646 * 1 2 3 27 27 H 0.96998 * 119.99899 * 240.03350 * 3 2 1 28 28 H 1.07993 * 126.64446 * 0.02589 * 7 6 4 29 29 H 1.07998 * 126.43672 * 179.71539 * 8 7 6 30 30 H 1.07994 * 125.61692 * 180.19586 * 9 8 7 31 31 H 1.09004 * 109.49382 * 301.32426 * 11 2 1 32 32 H 1.09000 * 109.49936 * 61.42566 * 11 2 1 33 33 H 1.09006 * 109.58359 * 185.57716 * 12 11 2 34 34 H 1.08994 * 109.58868 * 65.15202 * 12 11 2 35 35 H 0.96997 * 119.99848 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.58610 * 186.60713 * 22 13 12 37 37 H 1.08996 * 109.70340 * 66.24152 * 22 13 12 38 38 H 1.08999 * 109.49876 * 298.58221 * 23 2 1 39 39 H 1.09005 * 109.49797 * 58.64244 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6929 2.2109 1.0111 5 8 0.9934 1.8128 1.9239 6 6 2.1811 3.5939 1.0108 7 6 1.9275 4.5345 1.9677 8 6 2.5816 5.7085 1.5626 9 6 3.2056 5.4339 0.3959 10 8 2.9589 4.1598 0.0649 11 6 2.0396 -0.7209 1.2501 12 6 3.5712 -0.6890 1.2644 13 7 4.0676 -1.2494 0.0003 14 6 4.9753 -2.2748 0.0004 15 1 5.0078 -2.9670 0.8286 16 6 5.8535 -2.4244 -1.0642 17 7 6.0601 -1.4228 -1.8926 18 14 6.7420 -4.0474 -1.3209 19 1 5.7463 -5.1304 -1.5223 20 1 7.6163 -3.9493 -2.5173 21 1 7.5705 -4.3524 -0.1268 22 6 3.5714 -0.6891 -1.2641 23 6 2.0399 -0.7209 -1.2500 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 2.5753 1.6987 -0.7277 28 1 1.3349 4.4020 2.8607 29 1 2.5870 6.6530 2.0863 30 1 3.8017 6.1285 -0.1772 31 1 1.6570 -0.2207 2.1398 32 1 1.6974 -1.7557 1.2384 33 1 3.9413 -1.2850 2.0987 34 1 3.9143 0.3404 1.3676 35 1 6.6741 -1.5272 -2.6362 36 1 3.9416 -1.2852 -2.0981 37 1 3.9145 0.3401 -1.3696 38 1 1.6976 -1.7557 -1.2382 39 1 1.6569 -0.2212 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045344174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:45 Heat of formation + Delta-G solvation = 3.086338 kcal Electronic energy + Delta-G solvation = -22534.462863 eV Core-core repulsion = 19251.552444 eV Total energy + Delta-G solvation = -3282.910419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.64625 -39.96439 -37.33860 -34.46571 -33.10238 -32.12036 -30.99784 -29.97500 -29.38755 -27.42057 -24.18274 -23.52212 -22.28337 -21.78789 -20.97257 -20.19525 -18.65829 -18.44726 -16.81839 -16.27626 -16.25510 -14.94972 -14.83336 -14.51456 -14.21276 -13.81962 -13.41805 -13.25635 -13.13761 -13.03970 -12.98453 -12.69433 -12.37673 -11.83893 -11.64788 -11.32124 -11.21503 -10.93321 -10.70654 -10.37961 -10.31660 -10.08396 -9.98240 -9.86614 -9.65319 -9.27334 -8.83285 -8.57158 -8.44602 -6.65971 -5.79040 -3.20113 1.13850 2.34366 2.76029 3.37554 3.38888 3.44308 3.46006 3.49076 4.50452 4.71378 4.87025 5.00256 5.28415 5.36347 5.42991 5.51481 5.61468 5.62569 5.72592 5.87222 5.99166 6.05012 6.18715 6.27243 6.28191 6.33684 6.40891 6.53326 6.62636 6.69889 6.82051 6.86474 6.96078 7.05584 7.29580 7.59089 7.78660 7.83813 8.37210 8.45238 9.21728 9.85340 10.42476 11.29680 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.005174 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.294028 B = 5410.047761 C = 6051.105612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 N -0.696 5.696 4 C 0.601 3.399 5 O -0.524 6.524 6 C -0.069 4.069 7 C -0.131 4.131 8 C -0.228 4.228 9 C -0.011 4.011 10 O -0.160 6.160 11 C -0.144 4.144 12 C 0.149 3.851 13 N -0.590 5.590 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.905 5.905 18 Si 0.902 3.098 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.171 3.829 23 C -0.146 4.146 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.405 0.595 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.208 0.792 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.014 0.986 35 H 0.254 0.746 36 H 0.090 0.910 37 H 0.016 0.984 38 H 0.073 0.927 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 11.654 2.304 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 N -0.346 5.346 4 C 0.387 3.613 5 O -0.404 6.404 6 C -0.121 4.121 7 C -0.151 4.151 8 C -0.247 4.247 9 C -0.081 4.081 10 O -0.055 6.055 11 C -0.183 4.183 12 C 0.023 3.977 13 N -0.313 5.313 14 C -0.380 4.380 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.549 5.549 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.209 1.209 22 C 0.045 3.955 23 C -0.185 4.185 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.241 0.759 28 H 0.176 0.824 29 H 0.172 0.828 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.034 0.966 38 H 0.092 0.908 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.978 11.150 2.527 14.537 hybrid contribution 0.871 -0.331 -0.434 1.027 sum -8.107 10.820 2.094 13.681 Atomic orbital electron populations 1.22238 0.95164 1.02106 1.02420 1.20369 0.92772 0.79550 0.97573 1.46109 1.51992 1.12194 1.24263 1.16535 0.80236 0.81696 0.82830 1.90789 1.38639 1.74749 1.36181 1.22383 1.01892 0.95772 0.92049 1.21924 1.01437 0.91730 1.00031 1.21821 1.03906 1.00387 0.98589 1.24384 1.02013 0.83646 0.98106 1.84115 1.53880 1.24066 1.43458 1.22416 0.99079 0.99776 0.97074 1.20843 0.90827 0.96134 0.89897 1.44029 1.48286 1.39607 0.99383 1.19167 1.09822 1.02920 1.06131 0.91735 1.25009 0.97211 0.97435 0.99975 1.70011 1.37829 1.29060 1.18034 0.86374 0.79240 0.83888 0.77308 1.21045 1.21674 1.20931 1.20751 0.86799 0.97155 0.90821 1.22532 1.01509 1.00058 0.94443 0.93215 0.91968 0.90882 0.75878 0.82423 0.82844 0.77560 0.90833 0.91560 0.92989 0.96775 0.93634 0.89175 0.96597 0.90801 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.40 37.16 0.31 -2.14 16 2 C 0.18 3.14 0.66 -131.78 -0.09 3.06 16 3 N -0.70 -11.67 4.09 -48.87 -0.20 -11.87 16 4 C 0.60 10.19 7.20 -12.86 -0.09 10.10 16 5 O -0.52 -9.75 13.08 5.19 0.07 -9.68 16 6 C -0.07 -1.03 7.13 -36.79 -0.26 -1.30 16 7 C -0.13 -1.70 10.62 -39.39 -0.42 -2.12 16 8 C -0.23 -2.38 10.87 -39.89 -0.43 -2.82 16 9 C -0.01 -0.12 12.08 29.63 0.36 0.24 16 10 O -0.16 -2.23 10.40 4.99 0.05 -2.18 16 11 C -0.14 -2.72 4.67 -26.61 -0.12 -2.85 16 12 C 0.15 3.29 6.26 -3.71 -0.02 3.27 16 13 N -0.59 -14.69 2.99 -172.32 -0.52 -15.20 16 14 C -0.25 -6.88 9.59 -15.06 -0.14 -7.02 16 15 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 16 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 17 N -0.90 -25.88 11.19 55.49 0.62 -25.25 16 18 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.17 3.91 5.04 -3.71 -0.02 3.89 16 23 C -0.15 -2.66 4.96 -26.61 -0.13 -2.80 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.19 6.16 -51.93 -0.32 0.87 16 27 H 0.41 6.67 7.02 -40.82 -0.29 6.39 16 28 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.07 1.40 6.20 -51.93 -0.32 1.08 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 34 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 36 H 0.09 2.33 6.03 -51.93 -0.31 2.01 16 37 H 0.02 0.38 6.94 -51.93 -0.36 0.02 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 314.14 15.07 4.73 4.73 Total: -1.00 -30.83 314.14 -6.77 -37.60 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.35 Total: 5.80 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.15 Total: -0.52 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.10 Total: -52.33 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.12 Total: -11.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.83 -6.77 -37.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045344174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.684 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds