Wall clock time and date at job start Tue Mar 31 2020 00:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.46141 * 2 1 4 4 C 1.34777 * 120.00196 * 60.02937 * 3 2 1 5 5 O 1.21694 * 120.00042 * 359.97438 * 4 3 2 6 6 C 1.46659 * 120.00063 * 180.02562 * 4 3 2 7 7 C 1.36550 * 125.98589 * 179.97438 * 6 4 3 8 8 C 1.40365 * 106.70436 * 180.28067 * 7 6 4 9 9 C 1.35131 * 107.11660 * 359.57628 * 8 7 6 10 10 O 1.33935 * 108.76634 * 0.43139 * 9 8 7 11 11 C 1.53042 * 109.44796 * 119.96931 * 2 1 3 12 12 C 1.53193 * 109.30943 * 181.37889 * 11 2 1 13 13 N 1.46921 * 108.77531 * 305.35742 * 12 11 2 14 14 C 1.36938 * 120.63612 * 233.63390 * 13 12 11 15 15 H 1.07993 * 119.99637 * 27.66920 * 14 13 12 16 16 C 1.38814 * 119.99925 * 207.66775 * 14 13 12 17 17 N 1.31612 * 120.00208 * 17.36181 * 16 14 13 18 18 Si 1.86803 * 119.99662 * 197.36133 * 16 14 13 19 19 H 1.48497 * 109.47153 * 59.99744 * 18 16 14 20 20 H 1.48499 * 109.47276 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47041 * 299.99885 * 18 16 14 22 22 C 1.46932 * 118.73708 * 53.61573 * 13 12 11 23 23 C 1.53041 * 109.45831 * 240.02619 * 2 1 3 24 24 H 1.08999 * 109.47095 * 59.99722 * 1 2 3 25 25 H 1.08996 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46613 * 299.99646 * 1 2 3 27 27 H 0.96998 * 119.99899 * 240.03350 * 3 2 1 28 28 H 1.07993 * 126.64446 * 0.02589 * 7 6 4 29 29 H 1.07998 * 126.43672 * 179.71539 * 8 7 6 30 30 H 1.07994 * 125.61692 * 180.19586 * 9 8 7 31 31 H 1.09004 * 109.49382 * 301.32426 * 11 2 1 32 32 H 1.09000 * 109.49936 * 61.42566 * 11 2 1 33 33 H 1.09006 * 109.58359 * 185.57716 * 12 11 2 34 34 H 1.08994 * 109.58868 * 65.15202 * 12 11 2 35 35 H 0.96997 * 119.99848 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.58610 * 186.60713 * 22 13 12 37 37 H 1.08996 * 109.70340 * 66.24152 * 22 13 12 38 38 H 1.08999 * 109.49876 * 298.58221 * 23 2 1 39 39 H 1.09005 * 109.49797 * 58.64244 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6929 2.2109 1.0111 5 8 0.9934 1.8128 1.9239 6 6 2.1811 3.5939 1.0108 7 6 1.9275 4.5345 1.9677 8 6 2.5816 5.7085 1.5626 9 6 3.2056 5.4339 0.3959 10 8 2.9589 4.1598 0.0649 11 6 2.0396 -0.7209 1.2501 12 6 3.5712 -0.6890 1.2644 13 7 4.0676 -1.2494 0.0003 14 6 4.9753 -2.2748 0.0004 15 1 5.0078 -2.9670 0.8286 16 6 5.8535 -2.4244 -1.0642 17 7 6.0601 -1.4228 -1.8926 18 14 6.7420 -4.0474 -1.3209 19 1 5.7463 -5.1304 -1.5223 20 1 7.6163 -3.9493 -2.5173 21 1 7.5705 -4.3524 -0.1268 22 6 3.5714 -0.6891 -1.2641 23 6 2.0399 -0.7209 -1.2500 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 2.5753 1.6987 -0.7277 28 1 1.3349 4.4020 2.8607 29 1 2.5870 6.6530 2.0863 30 1 3.8017 6.1285 -0.1772 31 1 1.6570 -0.2207 2.1398 32 1 1.6974 -1.7557 1.2384 33 1 3.9413 -1.2850 2.0987 34 1 3.9143 0.3404 1.3676 35 1 6.6741 -1.5272 -2.6362 36 1 3.9416 -1.2852 -2.0981 37 1 3.9145 0.3401 -1.3696 38 1 1.6976 -1.7557 -1.2382 39 1 1.6569 -0.2212 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045344174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:45 Heat of formation + Delta-G solvation = -16.327244 kcal Electronic energy + Delta-G solvation = -22535.304699 eV Core-core repulsion = 19251.552444 eV Total energy + Delta-G solvation = -3283.752255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.60955 -41.34849 -38.87228 -36.17407 -34.11622 -33.70918 -32.63842 -31.65679 -30.45906 -29.08967 -25.96837 -24.75184 -23.96159 -22.77345 -22.51955 -21.43500 -20.18023 -19.59206 -18.69125 -17.31793 -17.27610 -16.85359 -16.38273 -15.87664 -15.65911 -15.40321 -15.18200 -14.84054 -14.61273 -14.19825 -13.98147 -13.91435 -13.54003 -13.33739 -13.11250 -13.05423 -12.86928 -12.63215 -12.52254 -12.21881 -12.01861 -11.78155 -11.53159 -11.34626 -11.01105 -10.80104 -10.53158 -10.11625 -9.60330 -8.67477 -7.87705 -5.32087 0.08977 1.46657 1.47760 1.49439 1.56508 1.76518 2.17421 2.29387 2.51770 3.27018 3.64405 3.70681 3.90280 3.99466 4.00984 4.10668 4.15086 4.46046 4.61685 4.65349 4.72187 4.75413 4.86940 4.90075 4.91559 4.95329 4.98550 5.11400 5.17628 5.27339 5.33690 5.44466 5.46136 5.59143 5.63461 5.74282 5.91713 6.38726 6.53322 7.08322 7.15399 7.85116 8.37779 9.18406 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.005174 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.294028 B = 5410.047761 C = 6051.105612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.184 3.816 3 N -0.697 5.697 4 C 0.600 3.400 5 O -0.549 6.549 6 C -0.111 4.111 7 C -0.126 4.126 8 C -0.231 4.231 9 C 0.001 3.999 10 O -0.178 6.178 11 C -0.132 4.132 12 C 0.152 3.848 13 N -0.605 5.605 14 C -0.267 4.267 15 H 0.062 0.938 16 C -0.045 4.045 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.178 3.822 23 C -0.131 4.131 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.405 0.595 28 H 0.162 0.838 29 H 0.187 0.813 30 H 0.251 0.749 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.001 0.999 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.003 0.997 38 H 0.074 0.926 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 12.661 2.152 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.099 3.901 3 N -0.347 5.347 4 C 0.388 3.612 5 O -0.430 6.430 6 C -0.162 4.162 7 C -0.147 4.147 8 C -0.249 4.249 9 C -0.068 4.068 10 O -0.074 6.074 11 C -0.171 4.171 12 C 0.026 3.974 13 N -0.328 5.328 14 C -0.397 4.397 15 H 0.079 0.921 16 C -0.240 4.240 17 N -0.577 5.577 18 Si 0.794 3.206 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.052 3.948 23 C -0.170 4.170 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.241 0.759 28 H 0.180 0.820 29 H 0.204 0.796 30 H 0.267 0.733 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.021 0.979 38 H 0.093 0.907 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.619 12.163 2.386 15.689 hybrid contribution 1.128 -0.501 -0.339 1.280 sum -8.490 11.662 2.047 14.570 Atomic orbital electron populations 1.22130 0.92983 1.03087 1.02680 1.20323 0.94281 0.79641 0.95894 1.46081 1.52141 1.11976 1.24490 1.16761 0.79733 0.82502 0.82247 1.90757 1.39807 1.75606 1.36855 1.22105 1.04710 0.95553 0.93872 1.22237 1.00654 0.92344 0.99444 1.22214 1.03190 1.00739 0.98766 1.25377 1.00688 0.82585 0.98154 1.84099 1.54046 1.25675 1.43591 1.22263 0.96392 1.00276 0.98214 1.20852 0.92993 0.94884 0.88689 1.44256 1.48318 1.39497 1.00767 1.19455 1.10404 1.03608 1.06244 0.92063 1.25718 0.98155 1.00336 0.99831 1.70155 1.38511 1.30687 1.18380 0.85371 0.78080 0.80187 0.76964 1.20347 1.21816 1.20517 1.20593 0.89784 0.95423 0.88991 1.22336 0.97773 1.00724 0.96214 0.91699 0.90609 0.91857 0.75876 0.82012 0.79572 0.73317 0.90871 0.91256 0.93737 0.98126 0.93998 0.92289 0.97926 0.90724 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 8.40 71.98 0.60 -3.72 16 2 C 0.18 6.20 0.66 3.63 0.00 6.20 16 3 N -0.70 -23.36 4.09 -426.73 -1.75 -25.10 16 4 C 0.60 20.42 7.20 86.44 0.62 21.04 16 5 O -0.55 -20.51 13.08 -4.33 -0.06 -20.57 16 6 C -0.11 -3.31 7.13 24.08 0.17 -3.13 16 7 C -0.13 -3.14 10.62 22.39 0.24 -2.91 16 8 C -0.23 -4.17 10.87 22.07 0.24 -3.93 16 9 C 0.00 0.02 12.08 67.10 0.81 0.83 16 10 O -0.18 -4.78 10.40 -5.04 -0.05 -4.83 16 11 C -0.13 -4.98 4.67 30.67 0.14 -4.83 16 12 C 0.15 6.82 6.26 86.36 0.54 7.36 16 13 N -0.60 -30.65 2.99 -699.10 -2.09 -32.74 16 14 C -0.27 -14.86 9.59 84.03 0.81 -14.06 16 15 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 16 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16 17 N -0.93 -54.24 11.19 21.65 0.24 -54.00 16 18 Si 0.97 44.75 29.59 68.60 2.03 46.78 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.18 8.26 5.04 86.36 0.43 8.70 16 23 C -0.13 -4.68 4.96 30.67 0.15 -4.53 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.98 6.16 -2.39 -0.01 1.96 16 27 H 0.41 13.46 7.02 -92.71 -0.65 12.81 16 28 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 29 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.25 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.07 2.79 6.20 -2.39 -0.01 2.78 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.04 2.01 7.93 -2.38 -0.02 1.99 16 34 H 0.00 0.04 7.74 -2.39 -0.02 0.02 16 35 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.06 3.11 6.03 -2.39 -0.01 3.10 16 37 H 0.00 0.13 6.94 -2.39 -0.02 0.12 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -67.49 314.14 3.91 -63.58 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.41 Total: 21.94 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.18 Total: 4.96 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -3.60 Total: -111.85 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.11 Total: -25.41 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.49 3.91 -63.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045344174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.252 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds