Wall clock time and date at job start Tue Mar 31 2020 00:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.45495 * 2 1 4 4 C 1.34771 * 120.00090 * 60.28134 * 3 2 1 5 5 O 1.21615 * 120.00163 * 359.71503 * 4 3 2 6 6 C 1.47384 * 119.99953 * 179.72008 * 4 3 2 7 7 C 1.47018 * 127.19202 * 179.69959 * 6 4 3 8 8 C 1.34176 * 105.95224 * 179.89187 * 7 6 4 9 9 O 1.34216 * 109.12605 * 0.38141 * 8 7 6 10 10 C 1.33651 * 110.90709 * 359.74589 * 9 8 7 11 11 C 1.53040 * 109.46148 * 119.96903 * 2 1 3 12 12 C 1.53157 * 109.32684 * 181.38324 * 11 2 1 13 13 N 1.46927 * 108.77338 * 305.35948 * 12 11 2 14 14 C 1.36934 * 120.63103 * 233.63004 * 13 12 11 15 15 H 1.07999 * 119.99418 * 151.80894 * 14 13 12 16 16 C 1.38813 * 120.00241 * 331.81062 * 14 13 12 17 17 N 1.31620 * 119.99745 * 343.08183 * 16 14 13 18 18 Si 1.86794 * 120.00018 * 163.08547 * 16 14 13 19 19 H 1.48495 * 109.47379 * 89.99803 * 18 16 14 20 20 H 1.48506 * 109.47058 * 209.99772 * 18 16 14 21 21 H 1.48500 * 109.47178 * 329.99625 * 18 16 14 22 22 C 1.46926 * 118.73625 * 53.60601 * 13 12 11 23 23 C 1.53041 * 109.45934 * 240.03044 * 2 1 3 24 24 H 1.09000 * 109.47261 * 59.99932 * 1 2 3 25 25 H 1.08997 * 109.46943 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46952 * 300.00303 * 1 2 3 27 27 H 0.96999 * 119.99197 * 239.99266 * 3 2 1 28 28 H 1.07997 * 127.02537 * 0.02562 * 7 6 4 29 29 H 1.08006 * 125.43925 * 180.12886 * 8 7 6 30 30 H 1.08000 * 125.80235 * 179.97438 * 10 9 8 31 31 H 1.08993 * 109.49797 * 301.32980 * 11 2 1 32 32 H 1.09002 * 109.49567 * 61.42103 * 11 2 1 33 33 H 1.08999 * 109.59119 * 185.56969 * 12 11 2 34 34 H 1.09003 * 109.70795 * 65.21536 * 12 11 2 35 35 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.58731 * 186.60535 * 22 13 12 37 37 H 1.09003 * 109.70327 * 66.24819 * 22 13 12 38 38 H 1.09000 * 109.49220 * 298.57388 * 23 2 1 39 39 H 1.08997 * 109.49784 * 58.64159 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6969 2.2095 1.0136 5 8 0.9978 1.8116 1.9257 6 6 2.1929 3.5974 1.0167 7 6 1.9372 4.6303 2.0312 8 6 2.5903 5.7259 1.6147 9 8 3.2033 5.4568 0.4514 10 6 2.9802 4.1938 0.0757 11 6 2.0400 -0.7208 1.2500 12 6 3.5711 -0.6889 1.2645 13 7 4.0677 -1.2493 0.0003 14 6 4.9754 -2.2745 0.0005 15 1 5.0027 -2.9716 -0.8240 16 6 5.8604 -2.4179 1.0603 17 7 6.0656 -1.4142 1.8866 18 14 6.7601 -4.0352 1.3135 19 1 8.0445 -4.0091 0.5686 20 1 7.0310 -4.2296 2.7606 21 1 5.9201 -5.1526 0.8127 22 6 3.5714 -0.6890 -1.2640 23 6 2.0399 -0.7208 -1.2501 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.5757 1.6987 -0.7275 28 1 1.3464 4.5275 2.9293 29 1 2.6152 6.6743 2.1309 30 1 3.3585 3.7251 -0.8207 31 1 1.6575 -0.2208 2.1398 32 1 1.6977 -1.7556 1.2383 33 1 3.9413 -1.2847 2.0987 34 1 3.9164 0.3398 1.3687 35 1 6.6843 -1.5142 2.6269 36 1 3.9417 -1.2850 -2.0981 37 1 3.9144 0.3403 -1.3697 38 1 1.6977 -1.7557 -1.2382 39 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045366190.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:49 Heat of formation + Delta-G solvation = -19.094125 kcal Electronic energy + Delta-G solvation = -22527.586895 eV Core-core repulsion = 19243.714659 eV Total energy + Delta-G solvation = -3283.872236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.42768 -41.27573 -38.76409 -36.10304 -34.15203 -33.45061 -32.38685 -31.60294 -30.39996 -29.07519 -25.95853 -24.94201 -23.92242 -22.66855 -22.32155 -21.27594 -20.09338 -19.42320 -18.64519 -17.19131 -17.05631 -16.83409 -16.28871 -15.90122 -15.72937 -15.54699 -15.19109 -14.85833 -14.57215 -14.47409 -14.04709 -13.81382 -13.36601 -13.26600 -13.15546 -12.95542 -12.82348 -12.55935 -12.54887 -12.25112 -11.97053 -11.75539 -11.38499 -11.30800 -10.77828 -10.59589 -10.52523 -9.98955 -9.68472 -8.65221 -7.86208 -5.31548 0.42935 1.17949 1.45158 1.47853 1.56723 2.04836 2.26810 2.46544 2.51739 3.29186 3.64318 3.73454 3.80647 3.87776 4.07244 4.14440 4.20922 4.49811 4.57518 4.68763 4.72061 4.76801 4.83976 4.88600 4.96208 5.04203 5.05619 5.15519 5.23309 5.35743 5.36540 5.38280 5.50739 5.63574 5.68081 5.78122 6.02503 6.39421 6.68457 7.15344 7.33935 7.88201 8.39745 9.19581 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.005393 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.156651 B = 5190.813746 C = 5839.413967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.187 3.813 3 N -0.700 5.700 4 C 0.583 3.417 5 O -0.576 6.576 6 C -0.268 4.268 7 C -0.199 4.199 8 C -0.024 4.024 9 O -0.177 6.177 10 C 0.036 3.964 11 C -0.140 4.140 12 C 0.194 3.806 13 N -0.606 5.606 14 C -0.260 4.260 15 H 0.071 0.929 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.282 1.282 20 H -0.298 1.298 21 H -0.269 1.269 22 C 0.139 3.861 23 C -0.123 4.123 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.406 0.594 28 H 0.153 0.847 29 H 0.250 0.750 30 H 0.240 0.760 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.039 0.961 34 H -0.009 1.009 35 H 0.247 0.753 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 12.208 -7.107 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.101 3.899 3 N -0.351 5.351 4 C 0.372 3.628 5 O -0.458 6.458 6 C -0.272 4.272 7 C -0.219 4.219 8 C -0.089 4.089 9 O -0.071 6.071 10 C -0.034 4.034 11 C -0.180 4.180 12 C 0.068 3.932 13 N -0.330 5.330 14 C -0.390 4.390 15 H 0.088 0.912 16 C -0.248 4.248 17 N -0.582 5.582 18 Si 0.792 3.208 19 H -0.209 1.209 20 H -0.225 1.225 21 H -0.194 1.194 22 C 0.014 3.986 23 C -0.162 4.162 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.242 0.758 28 H 0.171 0.829 29 H 0.266 0.734 30 H 0.256 0.744 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.010 0.990 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.302 12.109 -6.525 16.605 hybrid contribution 0.908 -0.960 0.710 1.500 sum -8.393 11.150 -5.816 15.119 Atomic orbital electron populations 1.22114 0.93589 1.02633 1.02515 1.20219 0.93892 0.80139 0.95619 1.45844 1.53057 1.11637 1.24535 1.17581 0.79220 0.84460 0.81519 1.90671 1.40352 1.77547 1.37204 1.21704 1.09111 0.95607 1.00807 1.22947 1.05267 0.92327 1.01326 1.24623 0.96692 1.01553 0.86026 1.83819 1.59297 1.28577 1.35449 1.24942 0.96649 0.81950 0.99878 1.22382 0.97827 0.99337 0.98470 1.20284 0.89477 0.94404 0.89006 1.44260 1.48189 1.39615 1.00934 1.19533 1.09327 1.03624 1.06522 0.91158 1.25798 0.98680 1.00215 1.00105 1.70204 1.38365 1.30953 1.18694 0.85332 0.78651 0.80464 0.76351 1.20876 1.22486 1.19416 1.21101 0.92655 0.96507 0.88366 1.22218 0.96835 1.01009 0.96181 0.90955 0.91166 0.92940 0.75784 0.82895 0.73417 0.74375 0.92734 0.92561 0.94274 0.99050 0.94440 0.91999 0.95728 0.90737 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 8.40 71.98 0.60 -3.74 16 2 C 0.19 6.12 0.66 3.63 0.00 6.12 16 3 N -0.70 -21.48 4.10 -426.04 -1.74 -23.23 16 4 C 0.58 20.29 7.23 86.65 0.63 20.92 16 5 O -0.58 -24.17 13.20 -4.08 -0.05 -24.22 16 6 C -0.27 -7.76 6.31 -18.99 -0.12 -7.88 16 7 C -0.20 -5.11 11.01 23.65 0.26 -4.85 16 8 C -0.02 -0.44 12.03 66.89 0.80 0.37 16 9 O -0.18 -3.64 10.52 4.47 0.05 -3.59 16 10 C 0.04 0.79 11.61 67.39 0.78 1.57 16 11 C -0.14 -5.92 4.66 30.66 0.14 -5.78 16 12 C 0.19 9.85 5.04 86.35 0.44 10.29 16 13 N -0.61 -29.77 2.99 -699.16 -2.09 -31.86 16 14 C -0.26 -14.15 9.58 84.03 0.81 -13.34 16 15 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 16 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 17 N -0.94 -56.79 11.20 21.65 0.24 -56.55 16 18 Si 0.96 45.38 29.59 68.60 2.03 47.41 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 C 0.14 5.14 6.24 86.36 0.54 5.68 16 23 C -0.12 -3.62 4.96 30.67 0.15 -3.47 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.78 6.17 -2.39 -0.01 1.76 16 27 H 0.41 10.20 6.24 -92.71 -0.58 9.63 16 28 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 29 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.24 3.37 7.47 -2.91 -0.02 3.35 16 31 H 0.05 2.49 6.19 -2.39 -0.01 2.47 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 2.31 6.06 -2.39 -0.01 2.30 16 34 H -0.01 -0.47 7.74 -2.39 -0.02 -0.49 16 35 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 36 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 37 H 0.02 0.86 6.94 -2.39 -0.02 0.85 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -74.52 313.35 4.37 -70.15 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.48 Total: 18.56 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.45 Total: 3.33 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.59 Total: -111.64 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.01 Total: -27.81 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.52 4.37 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045366190.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.058 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds