Wall clock time and date at job start Tue Mar 31 2020 00:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35134 * 125.61239 * 2 1 4 4 C 1.40362 * 107.11104 * 179.74095 * 3 2 1 5 5 C 1.36534 * 106.71067 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98981 * 180.02562 * 5 4 3 7 7 O 1.21698 * 119.99508 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00476 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00406 * 180.02562 * 8 6 5 10 10 C 1.53007 * 110.63889 * 300.70147 * 9 8 6 11 11 C 1.55157 * 110.72152 * 177.55832 * 9 8 6 12 12 C 1.55382 * 101.36653 * 277.04154 * 11 9 8 13 13 N 1.47426 * 104.87516 * 323.01839 * 12 11 9 14 14 C 1.36935 * 125.64958 * 204.09885 * 13 12 11 15 15 H 1.08002 * 119.99843 * 180.02562 * 14 13 12 16 16 C 1.38809 * 120.00266 * 0.03449 * 14 13 12 17 17 N 1.31624 * 119.99815 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00346 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47079 * 60.00572 * 18 16 14 20 20 H 1.48504 * 109.47394 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47387 * 300.00715 * 18 16 14 22 22 C 1.47026 * 108.70393 * 24.13210 * 13 12 11 23 23 O 1.33923 * 125.61769 * 179.70254 * 2 1 3 24 24 H 1.08997 * 109.47582 * 89.99858 * 1 2 3 25 25 H 1.09009 * 109.47148 * 209.99717 * 1 2 3 26 26 H 1.09003 * 109.47319 * 329.99236 * 1 2 3 27 27 H 1.08001 * 126.44317 * 359.70381 * 3 2 1 28 28 H 1.08006 * 126.64124 * 180.02562 * 4 3 2 29 29 H 0.97002 * 119.99473 * 359.97438 * 8 6 5 30 30 H 1.08993 * 109.47167 * 59.29521 * 10 9 8 31 31 H 1.08996 * 109.47039 * 179.30102 * 10 9 8 32 32 H 1.09000 * 109.46674 * 299.29847 * 10 9 8 33 33 H 1.09001 * 111.00357 * 35.20989 * 11 9 8 34 34 H 1.09000 * 111.00392 * 159.06021 * 11 9 8 35 35 H 1.08996 * 110.34616 * 204.16508 * 12 11 9 36 36 H 1.09001 * 110.44637 * 81.91271 * 12 11 9 37 37 H 0.97002 * 120.00086 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.88439 * 239.52706 * 22 13 12 39 39 H 1.08997 * 110.01169 * 118.42831 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6249 0.6532 0.0061 5 6 3.5823 -0.7115 0.0089 6 6 4.7414 -1.6100 0.0159 7 8 5.8680 -1.1496 0.0192 8 7 4.5591 -2.9453 0.0186 9 6 5.7169 -3.8428 0.0261 10 6 6.5965 -3.5986 -1.2019 11 6 5.2623 -5.3249 0.0898 12 6 5.0269 -5.5077 1.6147 13 7 6.0904 -4.7161 2.2595 14 6 6.5842 -4.9201 3.5203 15 1 7.3671 -4.2822 3.9034 16 6 6.0786 -5.9466 4.3061 17 7 5.1250 -6.7243 3.8390 18 14 6.7527 -6.2253 6.0257 19 1 6.5364 -5.0062 6.8458 20 1 6.0512 -7.3746 6.6522 21 1 8.2066 -6.5169 5.9463 22 6 6.5326 -3.6708 1.3248 23 8 2.2869 -1.0887 0.0057 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5140 27 1 1.9611 2.1261 -0.0045 28 1 4.5112 1.2705 0.0081 29 1 3.6611 -3.3121 0.0163 30 1 6.9392 -2.5640 -1.2033 31 1 7.4573 -4.2665 -1.1708 32 1 6.0194 -3.7915 -2.1062 33 1 4.3404 -5.4753 -0.4720 34 1 6.0484 -5.9903 -0.2671 35 1 5.1172 -6.5587 1.8888 36 1 4.0458 -5.1257 1.8970 37 1 4.7719 -7.4420 4.3879 38 1 7.5954 -3.7881 1.1133 39 1 6.3462 -2.6855 1.7519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046119320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:11 Heat of formation + Delta-G solvation = 6.830952 kcal Electronic energy + Delta-G solvation = -22002.433121 eV Core-core repulsion = 18719.685081 eV Total energy + Delta-G solvation = -3282.748040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -42.71116 -39.75479 -37.26389 -34.11678 -33.32365 -32.23625 -31.68866 -30.02291 -28.66062 -27.17753 -25.66240 -23.76998 -22.56488 -21.62752 -20.45420 -20.19741 -19.01911 -18.19706 -16.81413 -16.47655 -15.65431 -15.46536 -14.66852 -14.49540 -14.27687 -13.70590 -13.50672 -13.38086 -13.19624 -13.01918 -12.87871 -12.75567 -12.23832 -12.08066 -12.00872 -11.73215 -11.55349 -10.93067 -10.82944 -10.46925 -10.34398 -10.10383 -10.06079 -10.05146 -9.68327 -9.44529 -8.77666 -8.62326 -8.45006 -6.79345 -5.62807 -3.03324 1.09945 2.29062 2.61719 3.35245 3.43272 3.45417 3.47028 3.48750 4.50035 4.52815 4.84708 4.85803 5.10732 5.17546 5.20647 5.39081 5.42278 5.50909 5.57307 5.61580 5.74349 5.77478 5.90452 6.02968 6.16812 6.22826 6.31752 6.34504 6.45299 6.50328 6.69245 6.77614 6.89602 7.11282 7.47351 7.64887 7.76597 7.86008 8.34630 8.39332 9.25362 9.86000 10.50914 11.41539 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.004736 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.109391 B = 5911.212723 C = 6454.381585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.224 4.224 4 C -0.125 4.125 5 C -0.070 4.070 6 C 0.602 3.398 7 O -0.519 6.519 8 N -0.695 5.695 9 C 0.157 3.843 10 C -0.151 4.151 11 C -0.146 4.146 12 C 0.153 3.847 13 N -0.604 5.604 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.925 5.925 18 Si 0.915 3.085 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.136 3.864 23 O -0.161 6.161 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.402 0.598 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.011 0.989 37 H 0.252 0.748 38 H 0.033 0.967 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 10.908 -11.404 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.040 4.040 3 C -0.244 4.244 4 C -0.145 4.145 5 C -0.122 4.122 6 C 0.388 3.612 7 O -0.397 6.397 8 N -0.345 5.345 9 C 0.072 3.928 10 C -0.210 4.210 11 C -0.185 4.185 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.347 4.347 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.745 3.255 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.010 3.990 23 O -0.057 6.057 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.171 0.829 28 H 0.177 0.823 29 H 0.237 0.763 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.971 10.741 -11.205 17.449 hybrid contribution -0.164 -0.003 0.984 0.998 sum -8.135 10.738 -10.220 16.910 Atomic orbital electron populations 1.20393 0.84729 1.04507 1.03754 1.22785 0.94273 0.84212 1.02767 1.21554 0.92430 0.99635 1.10734 1.21907 0.98516 0.92999 1.01094 1.22286 0.81837 0.94820 1.13271 1.16510 0.85892 0.81673 0.77123 1.90838 1.21726 1.76174 1.50941 1.45925 1.10470 1.04932 1.73136 1.21445 0.85557 0.89809 0.96012 1.22064 0.99340 1.03594 0.95968 1.23443 1.00658 0.92791 1.01652 1.22030 0.89998 1.00495 0.84721 1.44487 1.42206 1.33104 1.13187 1.19058 1.15272 1.11586 0.88770 0.90558 1.24756 0.98803 0.98388 0.98773 1.69766 1.30070 1.21460 1.36144 0.86142 0.78186 0.77278 0.83853 1.21288 1.21583 1.21141 1.21610 0.95692 0.93165 0.88547 1.84020 1.16125 1.34913 1.70660 0.89746 0.90077 0.89087 0.82856 0.82321 0.76302 0.90779 0.91506 0.93048 0.91790 0.90303 0.87359 0.97142 0.93758 0.94950 0.94966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.41 36.01 0.37 -0.16 16 2 C 0.01 0.14 7.31 -35.41 -0.26 -0.12 16 3 C -0.22 -2.51 10.77 -39.89 -0.43 -2.94 16 4 C -0.12 -1.71 10.62 -39.40 -0.42 -2.13 16 5 C -0.07 -1.10 7.13 -36.80 -0.26 -1.36 16 6 C 0.60 10.74 7.00 -12.86 -0.09 10.65 16 7 O -0.52 -10.38 13.81 5.19 0.07 -10.31 16 8 N -0.70 -12.01 5.14 -47.20 -0.24 -12.25 16 9 C 0.16 2.91 0.80 -129.98 -0.10 2.81 16 10 C -0.15 -2.43 8.41 37.16 0.31 -2.12 16 11 C -0.15 -2.71 6.11 -24.33 -0.15 -2.86 16 12 C 0.15 3.68 5.88 -2.27 -0.01 3.67 16 13 N -0.60 -15.96 3.40 -169.77 -0.58 -16.53 16 14 C -0.22 -6.29 10.27 -15.06 -0.15 -6.45 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 17 N -0.93 -27.10 10.09 55.49 0.56 -26.54 16 18 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.14 3.12 6.16 -3.06 -0.02 3.10 16 23 O -0.16 -2.29 10.40 5.01 0.05 -2.24 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 29 H 0.40 6.32 8.23 -40.82 -0.34 5.98 16 30 H 0.07 1.28 6.20 -51.93 -0.32 0.95 16 31 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 34 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 35 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.03 0.74 7.80 -51.93 -0.41 0.34 16 39 H 0.03 0.80 6.67 -51.93 -0.35 0.45 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -32.76 322.05 -7.09 -39.85 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.48 Total: 4.03 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.65 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.26 Total: -55.33 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.12 Total: -12.54 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.76 -7.09 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046119320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.680 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.93 seconds