Wall clock time and date at job start Tue Mar 31 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.40360 * 126.64685 * 2 1 4 4 C 1.35129 * 107.11595 * 180.22229 * 3 2 1 5 5 O 1.33934 * 108.76683 * 359.77965 * 4 3 2 6 6 C 1.34912 * 109.38147 * 359.97438 * 5 4 3 7 7 C 1.46661 * 125.98613 * 179.97438 * 6 5 4 8 8 O 1.21696 * 120.00166 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99721 * 0.03007 * 7 6 5 10 10 C 1.46501 * 119.99732 * 179.97438 * 9 7 6 11 11 C 1.52995 * 110.78169 * 298.21030 * 10 9 7 12 12 C 1.55405 * 110.69436 * 174.82160 * 10 9 7 13 13 C 1.54914 * 101.66697 * 277.04903 * 12 10 9 14 14 N 1.47426 * 104.82992 * 323.07703 * 13 12 10 15 15 C 1.36936 * 125.64583 * 204.09666 * 14 13 12 16 16 H 1.07997 * 119.99931 * 180.02562 * 15 14 13 17 17 C 1.38819 * 120.00094 * 0.03301 * 15 14 13 18 18 N 1.31618 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47090 * 90.00295 * 19 17 15 21 21 H 1.48500 * 109.46944 * 210.00181 * 19 17 15 22 22 H 1.48498 * 109.47226 * 330.00384 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 14 13 12 24 24 H 1.09000 * 109.47051 * 270.15610 * 1 2 3 25 25 H 1.08992 * 109.46744 * 30.15697 * 1 2 3 26 26 H 1.09000 * 109.46700 * 150.15660 * 1 2 3 27 27 H 1.08001 * 126.43990 * 359.97438 * 3 2 1 28 28 H 1.08003 * 125.61866 * 179.77393 * 4 3 2 29 29 H 0.97000 * 120.00280 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.47083 * 181.78659 * 11 10 9 31 31 H 1.09002 * 109.47293 * 301.78668 * 11 10 9 32 32 H 1.09000 * 109.47062 * 61.78763 * 11 10 9 33 33 H 1.09000 * 110.89538 * 158.97708 * 12 10 9 34 34 H 1.09000 * 111.06973 * 35.19551 * 12 10 9 35 35 H 1.08999 * 110.37121 * 204.23438 * 13 12 10 36 36 H 1.09003 * 110.36718 * 81.91343 * 13 12 10 37 37 H 0.96998 * 120.00119 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.88241 * 118.36067 * 23 14 13 39 39 H 1.09000 * 109.88049 * 239.37196 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6006 -0.6648 -0.0032 6 6 2.3221 -1.0955 0.0036 7 6 1.8843 -2.4953 0.0070 8 8 0.6968 -2.7614 0.0127 9 7 2.7971 -3.4868 0.0039 10 6 2.3598 -4.8850 0.0079 11 6 1.5585 -5.1996 1.2727 12 6 3.5771 -5.8415 -0.1279 13 6 3.8000 -5.8491 -1.6609 14 7 2.4448 -5.8027 -2.2395 15 6 2.0942 -6.2452 -3.4871 16 1 1.0698 -6.1664 -3.8198 17 6 3.0554 -6.7954 -4.3240 18 7 4.3038 -6.8921 -3.9182 19 14 2.5772 -7.3984 -6.0260 20 1 2.7197 -6.2887 -7.0025 21 1 3.4645 -8.5219 -6.4205 22 1 1.1672 -7.8640 -6.0082 23 6 1.5324 -5.2019 -1.2557 24 1 -0.3633 0.0028 1.0277 25 1 -0.3632 0.8885 -0.5162 26 1 -0.3633 -0.8914 -0.5114 27 1 2.0307 2.1594 -0.0004 28 1 4.5047 1.2916 -0.0098 29 1 3.7436 -3.2747 -0.0009 30 1 1.2714 -6.2511 1.2688 31 1 2.1701 -4.9931 2.1510 32 1 0.6631 -4.5786 1.2993 33 1 3.3302 -6.8389 0.2359 34 1 4.4485 -5.4430 0.3916 35 1 4.3115 -6.7622 -1.9654 36 1 4.3727 -4.9730 -1.9653 37 1 4.9754 -7.2769 -4.5028 38 1 1.1049 -4.2838 -1.6588 39 1 0.7363 -5.9050 -1.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046136396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:33 Heat of formation + Delta-G solvation = 6.849210 kcal Electronic energy + Delta-G solvation = -22238.002550 eV Core-core repulsion = 18955.255302 eV Total energy + Delta-G solvation = -3282.747249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69692 -39.73405 -37.28145 -34.40644 -33.75196 -32.00423 -30.55370 -29.76071 -28.66450 -27.46345 -25.66456 -23.84682 -22.91996 -21.46584 -20.42182 -19.80444 -19.00455 -18.04692 -16.84154 -16.35235 -15.96971 -15.58541 -14.66621 -14.39035 -14.27747 -13.80628 -13.62547 -13.12457 -13.05432 -12.96956 -12.74781 -12.52344 -12.22465 -12.03152 -11.78000 -11.69515 -11.54361 -10.92080 -10.84481 -10.43058 -10.34509 -10.06802 -9.99577 -9.75201 -9.66802 -9.40642 -8.80200 -8.62365 -8.48845 -6.78549 -5.62575 -3.02862 1.12541 2.30998 2.75227 3.36414 3.42620 3.47464 3.48198 3.49692 4.52009 4.65861 4.74649 4.92191 5.16700 5.39328 5.41633 5.49604 5.51676 5.57333 5.72467 5.73409 5.76802 5.98637 6.02176 6.14111 6.16411 6.23594 6.34960 6.39001 6.46963 6.52329 6.69654 6.78957 6.90234 7.12800 7.48276 7.65832 7.78012 7.86687 8.36076 8.40748 9.25781 9.86520 10.51417 11.41875 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.004886 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.733028 B = 5728.926689 C = 6063.335720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.095 4.095 3 C -0.226 4.226 4 C -0.011 4.011 5 O -0.163 6.163 6 C -0.076 4.076 7 C 0.603 3.397 8 O -0.516 6.516 9 N -0.696 5.696 10 C 0.158 3.842 11 C -0.149 4.149 12 C -0.146 4.146 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.217 4.217 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.136 3.864 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.208 0.792 29 H 0.402 0.598 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.010 0.990 37 H 0.251 0.749 38 H 0.034 0.966 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 13.002 11.552 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.245 4.245 4 C -0.081 4.081 5 O -0.058 6.058 6 C -0.128 4.128 7 C 0.389 3.611 8 O -0.394 6.394 9 N -0.346 5.346 10 C 0.072 3.928 11 C -0.207 4.207 12 C -0.185 4.185 13 C 0.027 3.973 14 N -0.330 5.330 15 C -0.345 4.345 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.010 3.990 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.224 0.776 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.342 12.449 11.358 16.905 hybrid contribution 0.381 0.289 -0.979 1.089 sum -0.961 12.738 10.379 16.459 Atomic orbital electron populations 1.20406 0.88281 1.03645 1.02628 1.20616 0.97668 0.90962 1.00546 1.21710 0.92515 1.00025 1.10280 1.24304 0.99860 0.80790 1.03097 1.84079 1.28565 1.22579 1.70556 1.22127 0.81298 0.95209 1.14126 1.16478 0.85978 0.81553 0.77117 1.90808 1.15674 1.82059 1.50863 1.45915 1.09482 1.05854 1.73315 1.21469 0.96260 0.79222 0.95854 1.22031 1.00747 1.02190 0.95761 1.23409 0.95262 0.98139 1.01670 1.21947 0.87549 1.02517 0.85255 1.44499 1.04131 1.71025 1.13344 1.19100 0.94379 1.31987 0.89083 0.90522 1.24758 0.95484 1.01792 0.98746 1.69773 1.00763 1.51220 1.35667 0.86069 0.77399 0.78084 0.83968 1.21737 1.21670 1.20677 1.21607 0.92602 0.96527 0.88300 0.91047 0.91751 0.89265 0.82898 0.77568 0.76358 0.91521 0.93052 0.91015 0.90378 0.91846 0.87363 0.97172 0.93819 0.94773 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.81 36.01 0.35 -0.80 16 2 C -0.10 -1.30 6.20 -104.43 -0.65 -1.95 16 3 C -0.23 -2.45 10.83 -39.89 -0.43 -2.89 16 4 C -0.01 -0.11 12.08 29.63 0.36 0.25 16 5 O -0.16 -2.22 10.40 4.99 0.05 -2.16 16 6 C -0.08 -1.17 7.13 -36.80 -0.26 -1.43 16 7 C 0.60 10.55 7.01 -12.86 -0.09 10.46 16 8 O -0.52 -9.93 11.69 5.19 0.06 -9.87 16 9 N -0.70 -11.85 5.15 -47.08 -0.24 -12.10 16 10 C 0.16 2.88 0.81 -129.85 -0.11 2.77 16 11 C -0.15 -2.35 8.42 37.15 0.31 -2.04 16 12 C -0.15 -2.69 6.10 -24.44 -0.15 -2.84 16 13 C 0.15 3.67 5.87 -2.53 -0.01 3.66 16 14 N -0.60 -15.89 3.39 -170.07 -0.58 -16.47 16 15 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 18 N -0.92 -27.11 10.09 55.49 0.56 -26.55 16 19 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.14 3.08 6.12 -3.07 -0.02 3.07 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.31 6.45 -51.93 -0.33 0.97 16 27 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.21 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.40 6.21 8.23 -40.82 -0.34 5.88 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.20 6.46 -51.93 -0.34 0.87 16 33 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 34 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.03 0.84 6.47 -51.93 -0.34 0.50 16 39 H 0.03 0.72 7.82 -51.93 -0.41 0.32 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -32.47 318.08 -6.72 -39.19 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.39 Total: 4.26 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.95 Total: 1.41 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.26 Total: -55.11 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.11 Total: -12.04 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.47 -6.72 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046136396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.041 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds