Wall clock time and date at job start Tue Mar 31 2020 01:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.40360 * 126.64685 * 2 1 4 4 C 1.35129 * 107.11595 * 180.22229 * 3 2 1 5 5 O 1.33934 * 108.76683 * 359.77965 * 4 3 2 6 6 C 1.34912 * 109.38147 * 359.97438 * 5 4 3 7 7 C 1.46661 * 125.98613 * 179.97438 * 6 5 4 8 8 O 1.21696 * 120.00166 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99721 * 0.03007 * 7 6 5 10 10 C 1.46501 * 119.99732 * 179.97438 * 9 7 6 11 11 C 1.52995 * 110.78169 * 298.21030 * 10 9 7 12 12 C 1.55405 * 110.69436 * 174.82160 * 10 9 7 13 13 C 1.54914 * 101.66697 * 277.04903 * 12 10 9 14 14 N 1.47426 * 104.82992 * 323.07703 * 13 12 10 15 15 C 1.36936 * 125.64583 * 204.09666 * 14 13 12 16 16 H 1.07997 * 119.99931 * 180.02562 * 15 14 13 17 17 C 1.38819 * 120.00094 * 0.03301 * 15 14 13 18 18 N 1.31618 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47090 * 90.00295 * 19 17 15 21 21 H 1.48500 * 109.46944 * 210.00181 * 19 17 15 22 22 H 1.48498 * 109.47226 * 330.00384 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 14 13 12 24 24 H 1.09000 * 109.47051 * 270.15610 * 1 2 3 25 25 H 1.08992 * 109.46744 * 30.15697 * 1 2 3 26 26 H 1.09000 * 109.46700 * 150.15660 * 1 2 3 27 27 H 1.08001 * 126.43990 * 359.97438 * 3 2 1 28 28 H 1.08003 * 125.61866 * 179.77393 * 4 3 2 29 29 H 0.97000 * 120.00280 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.47083 * 181.78659 * 11 10 9 31 31 H 1.09002 * 109.47293 * 301.78668 * 11 10 9 32 32 H 1.09000 * 109.47062 * 61.78763 * 11 10 9 33 33 H 1.09000 * 110.89538 * 158.97708 * 12 10 9 34 34 H 1.09000 * 111.06973 * 35.19551 * 12 10 9 35 35 H 1.08999 * 110.37121 * 204.23438 * 13 12 10 36 36 H 1.09003 * 110.36718 * 81.91343 * 13 12 10 37 37 H 0.96998 * 120.00119 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.88241 * 118.36067 * 23 14 13 39 39 H 1.09000 * 109.88049 * 239.37196 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6006 -0.6648 -0.0032 6 6 2.3221 -1.0955 0.0036 7 6 1.8843 -2.4953 0.0070 8 8 0.6968 -2.7614 0.0127 9 7 2.7971 -3.4868 0.0039 10 6 2.3598 -4.8850 0.0079 11 6 1.5585 -5.1996 1.2727 12 6 3.5771 -5.8415 -0.1279 13 6 3.8000 -5.8491 -1.6609 14 7 2.4448 -5.8027 -2.2395 15 6 2.0942 -6.2452 -3.4871 16 1 1.0698 -6.1664 -3.8198 17 6 3.0554 -6.7954 -4.3240 18 7 4.3038 -6.8921 -3.9182 19 14 2.5772 -7.3984 -6.0260 20 1 2.7197 -6.2887 -7.0025 21 1 3.4645 -8.5219 -6.4205 22 1 1.1672 -7.8640 -6.0082 23 6 1.5324 -5.2019 -1.2557 24 1 -0.3633 0.0028 1.0277 25 1 -0.3632 0.8885 -0.5162 26 1 -0.3633 -0.8914 -0.5114 27 1 2.0307 2.1594 -0.0004 28 1 4.5047 1.2916 -0.0098 29 1 3.7436 -3.2747 -0.0009 30 1 1.2714 -6.2511 1.2688 31 1 2.1701 -4.9931 2.1510 32 1 0.6631 -4.5786 1.2993 33 1 3.3302 -6.8389 0.2359 34 1 4.4485 -5.4430 0.3916 35 1 4.3115 -6.7622 -1.9654 36 1 4.3727 -4.9730 -1.9653 37 1 4.9754 -7.2769 -4.5028 38 1 1.1049 -4.2838 -1.6588 39 1 0.7363 -5.9050 -1.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046136396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:32 Heat of formation + Delta-G solvation = -15.162449 kcal Electronic energy + Delta-G solvation = -22238.957047 eV Core-core repulsion = 18955.255302 eV Total energy + Delta-G solvation = -3283.701746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.65947 -41.16153 -38.87787 -35.91414 -35.00102 -33.72410 -32.03064 -31.02424 -30.35666 -28.51701 -27.56315 -25.52167 -24.17114 -22.49969 -22.24098 -20.99428 -20.47920 -19.29006 -18.76710 -17.38505 -17.20822 -16.94756 -16.71125 -15.82456 -15.60404 -15.48449 -15.08525 -14.37057 -14.29699 -14.06689 -14.01509 -13.87308 -13.61517 -13.50353 -13.32503 -13.15561 -12.86176 -12.77975 -12.73622 -12.12552 -12.05246 -11.98727 -11.70796 -11.59526 -10.89515 -10.76693 -10.65395 -10.17330 -9.55248 -8.90300 -7.79998 -5.23776 0.06518 1.43155 1.44330 1.46049 1.55251 1.73103 2.13017 2.26401 2.47612 3.29449 3.53984 3.68538 3.79116 3.84611 3.97490 3.99200 4.14504 4.54632 4.61234 4.63038 4.64969 4.73344 4.78018 4.79061 4.83187 4.89328 5.00330 5.06270 5.11316 5.23610 5.30227 5.41286 5.46601 5.57662 5.62613 5.77805 5.90839 6.29032 6.51083 7.07125 7.11352 7.75398 8.39269 9.21696 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.004886 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.733028 B = 5728.926689 C = 6063.335720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.097 4.097 3 C -0.234 4.234 4 C 0.009 3.991 5 O -0.175 6.175 6 C -0.119 4.119 7 C 0.598 3.402 8 O -0.544 6.544 9 N -0.696 5.696 10 C 0.168 3.832 11 C -0.139 4.139 12 C -0.127 4.127 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.061 4.061 18 N -0.945 5.945 19 Si 0.979 3.021 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.135 3.865 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.185 0.815 28 H 0.256 0.744 29 H 0.409 0.591 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.078 0.922 36 H -0.012 1.012 37 H 0.249 0.751 38 H 0.009 0.991 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 14.605 12.571 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.253 4.253 4 C -0.060 4.060 5 O -0.071 6.071 6 C -0.171 4.171 7 C 0.386 3.614 8 O -0.425 6.425 9 N -0.346 5.346 10 C 0.082 3.918 11 C -0.197 4.197 12 C -0.165 4.165 13 C 0.030 3.970 14 N -0.349 5.349 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.254 4.254 18 N -0.595 5.595 19 Si 0.807 3.193 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.197 1.197 23 C 0.009 3.991 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.203 0.797 28 H 0.272 0.728 29 H 0.245 0.755 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.006 0.994 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.681 14.063 12.400 18.761 hybrid contribution 0.188 -0.071 -1.327 1.342 sum -0.493 13.991 11.073 17.850 Atomic orbital electron populations 1.20409 0.87960 1.03334 1.03171 1.21028 0.98304 0.91719 0.98902 1.22092 0.92152 1.00682 1.10334 1.25362 1.01547 0.79620 0.99437 1.84062 1.27648 1.24417 1.70979 1.21777 0.82579 0.94470 1.18249 1.16789 0.85670 0.82597 0.76344 1.90781 1.16689 1.82867 1.52131 1.45852 1.09917 1.05314 1.73517 1.21315 0.95638 0.80068 0.94788 1.21953 1.00213 1.02444 0.95136 1.23260 0.96711 0.99159 0.97418 1.21756 0.86217 0.99865 0.89125 1.44783 1.05591 1.71125 1.13418 1.19395 0.94460 1.32662 0.90718 0.91111 1.25568 0.95519 1.01987 1.02305 1.70011 1.01401 1.51467 1.36589 0.85069 0.77489 0.77381 0.79332 1.21580 1.21264 1.19704 1.21686 0.92837 0.94904 0.89652 0.90053 0.89325 0.92188 0.79725 0.72847 0.75512 0.90654 0.90386 0.92237 0.89275 0.88307 0.90366 0.99450 0.94142 0.97318 0.95438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 9.81 71.24 0.70 -1.54 16 2 C -0.10 -2.54 6.20 -19.74 -0.12 -2.66 16 3 C -0.23 -4.34 10.83 22.07 0.24 -4.10 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.18 -4.50 10.40 -5.04 -0.05 -4.56 16 6 C -0.12 -3.66 7.13 24.07 0.17 -3.48 16 7 C 0.60 21.35 7.01 86.44 0.61 21.95 16 8 O -0.54 -21.77 11.69 -4.33 -0.05 -21.82 16 9 N -0.70 -23.70 5.15 -421.09 -2.17 -25.87 16 10 C 0.17 6.09 0.81 4.88 0.00 6.10 16 11 C -0.14 -4.21 8.42 71.98 0.61 -3.60 16 12 C -0.13 -4.54 6.10 32.08 0.20 -4.35 16 13 C 0.16 7.65 5.87 86.86 0.51 8.16 16 14 N -0.62 -33.85 3.39 -691.97 -2.35 -36.19 16 15 C -0.24 -14.41 10.27 84.04 0.86 -13.55 16 16 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 17 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 18 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16 19 Si 0.98 46.92 29.55 68.60 2.03 48.94 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.14 6.33 6.12 86.73 0.53 6.86 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.83 6.45 -2.39 -0.02 1.81 16 27 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.26 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.41 12.48 8.23 -92.71 -0.76 11.72 16 30 H 0.07 2.13 8.13 -2.39 -0.02 2.11 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.97 6.46 -2.39 -0.02 1.96 16 33 H 0.09 3.03 8.04 -2.39 -0.02 3.01 16 34 H 0.10 2.86 8.04 -2.39 -0.02 2.84 16 35 H 0.08 4.35 5.87 -2.39 -0.01 4.34 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.01 0.45 6.47 -2.39 -0.02 0.44 16 39 H 0.03 1.30 7.82 -2.39 -0.02 1.28 16 Total: -1.00 -73.79 318.08 3.51 -70.28 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.30 Total: 17.95 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.58 Total: 7.67 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -4.30 Total: -118.47 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.10 Total: -26.37 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -73.79 3.51 -70.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046136396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.119 kcal (2) G-P(sol) polarization free energy of solvation -73.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds