Wall clock time and date at job start Tue Mar 31 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40360 * 126.64034 * 2 1 4 4 C 1.35136 * 107.11397 * 179.73940 * 3 2 1 5 5 O 1.33938 * 108.76443 * 0.26491 * 4 3 2 6 6 C 1.34918 * 109.38438 * 359.97438 * 5 4 3 7 7 C 1.46656 * 125.98587 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99521 * 179.97438 * 7 6 5 9 9 N 1.34767 * 120.00056 * 359.97438 * 7 6 5 10 10 C 1.46507 * 120.00228 * 179.97438 * 9 7 6 11 11 C 1.53003 * 110.87969 * 62.43156 * 10 9 7 12 12 C 1.55157 * 111.00575 * 186.34887 * 10 9 7 13 13 C 1.54326 * 102.93787 * 82.58000 * 12 10 9 14 14 N 1.47022 * 107.27414 * 22.18746 * 13 12 10 15 15 C 1.36938 * 125.64965 * 181.02576 * 14 13 12 16 16 H 1.07999 * 120.00154 * 173.98389 * 15 14 13 17 17 C 1.38809 * 120.00166 * 353.98211 * 15 14 13 18 18 N 1.31626 * 119.99775 * 6.84997 * 17 15 14 19 19 Si 1.86800 * 120.00323 * 186.84864 * 17 15 14 20 20 H 1.48499 * 109.47054 * 94.98223 * 19 17 15 21 21 H 1.48499 * 109.47207 * 214.98461 * 19 17 15 22 22 H 1.48504 * 109.46859 * 334.98640 * 19 17 15 23 23 C 1.47423 * 108.70265 * 1.06135 * 14 13 12 24 24 H 1.08999 * 109.47029 * 90.02518 * 1 2 3 25 25 H 1.09002 * 109.46384 * 210.01901 * 1 2 3 26 26 H 1.08996 * 109.47181 * 330.01712 * 1 2 3 27 27 H 1.07998 * 126.44682 * 0.02562 * 3 2 1 28 28 H 1.07998 * 125.62023 * 180.29725 * 4 3 2 29 29 H 0.97001 * 120.00313 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47208 * 60.70140 * 11 10 9 31 31 H 1.09005 * 109.47001 * 180.70106 * 11 10 9 32 32 H 1.08995 * 109.47171 * 300.70053 * 11 10 9 33 33 H 1.08998 * 110.71797 * 200.93591 * 12 10 9 34 34 H 1.08997 * 110.72175 * 324.21490 * 12 10 9 35 35 H 1.09001 * 109.87790 * 262.77298 * 13 12 10 36 36 H 1.09000 * 110.01476 * 141.68101 * 13 12 10 37 37 H 0.97005 * 119.99929 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.36886 * 217.02882 * 23 14 13 39 39 H 1.09000 * 110.46071 * 94.75364 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6184 0.6746 0.0059 5 8 3.6006 -0.6647 0.0036 6 6 2.3221 -1.0955 -0.0032 7 6 1.8844 -2.4953 -0.0081 8 8 0.6969 -2.7614 -0.0137 9 7 2.7973 -3.4867 -0.0065 10 6 2.3601 -4.8850 -0.0108 11 6 1.5708 -5.2057 -1.2817 12 6 3.5675 -5.8457 0.1522 13 6 3.7934 -5.8609 1.6787 14 7 2.5304 -5.4526 2.3110 15 6 2.3184 -5.3194 3.6573 16 1 1.3827 -4.9201 4.0197 17 6 3.3061 -5.6977 4.5563 18 7 4.4937 -6.0567 4.1166 19 14 2.9500 -5.6974 6.3900 20 1 2.5378 -7.0594 6.8145 21 1 4.1725 -5.2965 7.1316 22 1 1.8564 -4.7359 6.6816 23 6 1.5298 -5.2111 1.2556 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3632 -0.8899 0.5142 26 1 -0.3633 0.8901 0.5135 27 1 2.0306 2.1595 0.0004 28 1 4.5046 1.2918 0.0120 29 1 3.7438 -3.2745 -0.0017 30 1 2.2048 -5.0445 -2.1536 31 1 1.2467 -6.2461 -1.2554 32 1 0.6985 -4.5548 -1.3416 33 1 3.3186 -6.8429 -0.2107 34 1 4.4443 -5.4542 -0.3636 35 1 4.5843 -5.1590 1.9433 36 1 4.0642 -6.8647 2.0058 37 1 5.1838 -6.3215 4.7447 38 1 0.8949 -4.3658 1.5211 39 1 0.9246 -6.1030 1.0931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046136397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:35 Heat of formation + Delta-G solvation = -17.173126 kcal Electronic energy + Delta-G solvation = -22398.068190 eV Core-core repulsion = 19114.279255 eV Total energy + Delta-G solvation = -3283.788935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.64435 -41.11559 -38.85399 -35.85145 -34.98842 -33.72233 -32.02885 -31.04359 -30.32920 -28.50107 -27.53573 -25.52315 -24.18648 -22.52975 -22.13104 -20.96919 -20.48352 -19.29281 -18.70156 -17.36968 -17.14243 -16.94370 -16.67247 -15.88708 -15.64532 -15.44780 -15.11910 -14.48135 -14.17288 -14.01515 -13.92893 -13.84560 -13.55527 -13.49195 -13.42130 -13.10810 -12.88166 -12.77353 -12.72163 -12.16647 -12.06173 -11.99817 -11.72626 -11.58393 -10.86974 -10.70973 -10.64300 -10.12823 -9.53927 -8.87198 -7.88986 -5.21703 0.08553 1.41747 1.43644 1.44089 1.52510 1.75966 2.15967 2.30751 2.46609 3.29217 3.52351 3.68578 3.80849 3.85839 3.98726 4.02697 4.16347 4.55640 4.61379 4.63579 4.67281 4.74288 4.78843 4.80133 4.86263 4.91751 5.02592 5.05861 5.12089 5.24035 5.33638 5.40897 5.48064 5.60185 5.66050 5.73943 5.92402 6.18248 6.53849 7.09170 7.12282 7.75450 8.40299 9.21627 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.005783 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.743190 B = 4840.260739 C = 5526.249354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.098 4.098 3 C -0.233 4.233 4 C 0.007 3.993 5 O -0.177 6.177 6 C -0.119 4.119 7 C 0.599 3.401 8 O -0.545 6.545 9 N -0.692 5.692 10 C 0.164 3.836 11 C -0.139 4.139 12 C -0.128 4.128 13 C 0.184 3.816 14 N -0.621 5.621 15 C -0.243 4.243 16 H 0.068 0.932 17 C -0.059 4.059 18 N -0.945 5.945 19 Si 0.974 3.026 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.275 1.275 23 C 0.128 3.872 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.186 0.814 28 H 0.255 0.745 29 H 0.407 0.593 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.010 0.990 36 H 0.014 0.986 37 H 0.248 0.752 38 H 0.032 0.968 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 12.320 -13.373 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.252 4.252 4 C -0.062 4.062 5 O -0.072 6.072 6 C -0.170 4.170 7 C 0.387 3.613 8 O -0.426 6.426 9 N -0.341 5.341 10 C 0.078 3.922 11 C -0.198 4.198 12 C -0.166 4.166 13 C 0.059 3.941 14 N -0.347 5.347 15 C -0.372 4.372 16 H 0.086 0.914 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.802 3.198 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.200 1.200 23 C 0.001 3.999 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.203 0.797 28 H 0.270 0.730 29 H 0.242 0.758 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.028 0.972 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.671 11.845 -13.187 17.804 hybrid contribution 0.390 0.050 1.470 1.522 sum -1.281 11.895 -11.716 16.745 Atomic orbital electron populations 1.20399 0.87877 1.03301 1.03165 1.21028 0.98346 0.91677 0.99072 1.22087 0.92112 1.00686 1.10292 1.25347 1.01570 0.79653 0.99665 1.84067 1.27794 1.24424 1.70962 1.21848 0.82509 0.94669 1.17971 1.16747 0.85671 0.82546 0.76352 1.90759 1.16602 1.82843 1.52378 1.45736 1.09743 1.05441 1.73160 1.21477 0.95575 0.79923 0.95251 1.21922 1.00221 1.02666 0.94945 1.23104 0.97294 0.99671 0.96521 1.20956 0.87386 0.96984 0.88759 1.44682 1.08703 1.80021 1.01301 1.19323 1.00336 1.35513 0.82037 0.91399 1.25566 0.95890 1.01687 1.02139 1.70165 1.03304 1.52293 1.33611 0.85135 0.76867 0.77760 0.80048 1.21102 1.21655 1.19971 1.22014 0.91987 0.97430 0.88426 0.89996 0.92196 0.89380 0.79700 0.72969 0.75785 0.90500 0.90176 0.92294 0.88477 0.88669 0.97207 0.96755 0.94260 0.94970 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.29 9.81 71.24 0.70 -1.60 16 2 C -0.10 -2.71 6.20 -19.74 -0.12 -2.84 16 3 C -0.23 -4.66 10.83 22.07 0.24 -4.42 16 4 C 0.01 0.13 12.08 67.10 0.81 0.94 16 5 O -0.18 -4.89 10.40 -5.15 -0.05 -4.95 16 6 C -0.12 -3.82 7.13 24.07 0.17 -3.65 16 7 C 0.60 22.05 7.17 86.44 0.62 22.67 16 8 O -0.55 -22.07 11.51 -4.33 -0.05 -22.11 16 9 N -0.69 -24.27 5.17 -420.57 -2.17 -26.45 16 10 C 0.16 5.85 0.82 4.99 0.00 5.86 16 11 C -0.14 -4.01 8.62 71.98 0.62 -3.39 16 12 C -0.13 -4.44 5.99 31.78 0.19 -4.25 16 13 C 0.18 9.05 5.37 86.73 0.47 9.51 16 14 N -0.62 -33.38 3.39 -691.99 -2.35 -35.73 16 15 C -0.24 -14.44 10.26 84.03 0.86 -13.58 16 16 H 0.07 4.02 7.84 -2.91 -0.02 4.00 16 17 C -0.06 -3.49 5.48 84.86 0.47 -3.03 16 18 N -0.94 -57.45 10.36 21.65 0.22 -57.22 16 19 Si 0.97 47.43 29.56 68.60 2.03 49.46 16 20 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.13 5.80 6.11 86.85 0.53 6.33 16 24 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 1.88 6.46 -2.39 -0.02 1.86 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.25 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.41 13.22 8.25 -92.71 -0.76 12.46 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.07 8.13 -2.38 -0.02 2.05 16 32 H 0.06 1.89 6.45 -2.39 -0.02 1.87 16 33 H 0.10 3.00 8.04 -2.39 -0.02 2.98 16 34 H 0.09 2.76 8.05 -2.39 -0.02 2.74 16 35 H 0.01 0.53 7.54 -2.39 -0.02 0.51 16 36 H 0.01 0.79 7.36 -2.39 -0.02 0.77 16 37 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 38 H 0.03 1.60 6.31 -2.39 -0.02 1.59 16 39 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 Total: -1.00 -74.60 318.89 3.48 -71.12 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.30 Total: 17.33 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.56 Total: 8.56 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -4.30 Total: -119.40 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.10 Total: -27.06 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -74.60 3.48 -71.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046136397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.943 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds