Wall clock time and date at job start Tue Mar 31 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34181 * 125.43793 * 2 1 4 4 C 1.47019 * 105.95303 * 179.97438 * 3 2 1 5 5 C 1.47384 * 127.19293 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99737 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99893 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99427 * 180.02562 * 7 5 4 9 9 C 1.52997 * 110.64182 * 300.69873 * 8 7 5 10 10 C 1.55163 * 110.86719 * 177.45118 * 8 7 5 11 11 C 1.54904 * 101.58073 * 277.06821 * 10 8 7 12 12 N 1.47421 * 104.83620 * 322.98869 * 11 10 8 13 13 C 1.36936 * 125.65035 * 204.09628 * 12 11 10 14 14 H 1.08003 * 119.99872 * 180.02562 * 13 12 11 15 15 C 1.38807 * 119.99824 * 0.04033 * 13 12 11 16 16 N 1.31611 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99647 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47479 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47174 * 120.00294 * 17 15 13 20 20 H 1.48501 * 109.47230 * 240.00266 * 17 15 13 21 21 C 1.47025 * 108.70178 * 24.13268 * 12 11 10 22 22 C 1.36417 * 105.61582 * 0.22424 * 4 3 2 23 23 O 1.33646 * 108.39762 * 359.63189 * 22 4 3 24 24 H 1.08999 * 109.46832 * 89.99874 * 1 2 3 25 25 H 1.09000 * 109.47354 * 210.00140 * 1 2 3 26 26 H 1.09001 * 109.47363 * 330.00501 * 1 2 3 27 27 H 1.07991 * 127.02335 * 0.02562 * 3 2 1 28 28 H 0.96991 * 120.00318 * 359.97438 * 7 5 4 29 29 H 1.09002 * 109.47153 * 181.69032 * 9 8 7 30 30 H 1.09001 * 109.46832 * 61.69223 * 9 8 7 31 31 H 1.09004 * 109.47261 * 301.69204 * 9 8 7 32 32 H 1.08995 * 111.00334 * 35.14471 * 10 8 7 33 33 H 1.08999 * 111.00142 * 158.99183 * 10 8 7 34 34 H 1.09007 * 110.36208 * 204.15318 * 11 10 8 35 35 H 1.08998 * 110.36944 * 81.83660 * 11 10 8 36 36 H 0.97004 * 119.99847 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.88484 * 239.52534 * 21 12 11 38 38 H 1.08998 * 110.01061 * 118.42466 * 21 12 11 39 39 H 1.08003 * 125.80046 * 179.75325 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8320 2.6265 0.0000 7 7 6.1068 0.8074 0.0015 8 6 7.3309 1.6123 0.0018 9 6 7.3808 2.5185 -1.2299 10 6 8.5885 0.7057 0.0677 11 6 8.6934 0.4296 1.5883 12 7 8.2890 1.6936 2.2303 13 6 8.6470 2.1003 3.4879 14 1 8.2966 3.0481 3.8691 15 6 9.4605 1.2945 4.2725 16 7 9.8881 0.1399 3.8077 17 14 9.9484 1.8491 5.9883 18 1 9.3408 3.1741 6.2718 19 1 9.4644 0.8598 6.9846 20 1 11.4272 1.9539 6.0729 21 6 7.4367 2.4447 1.2970 22 6 3.5789 -0.7582 -0.0042 23 8 2.2852 -1.0935 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.9596 2.1229 0.0004 28 1 6.1630 -0.1609 0.0030 29 1 8.3115 3.0858 -1.2261 30 1 6.5357 3.2067 -1.2090 31 1 7.3306 1.9087 -2.1320 32 1 8.4328 -0.2192 -0.4875 33 1 9.4702 1.2338 -0.2953 34 1 9.7192 0.1783 1.8583 35 1 8.0168 -0.3752 1.8754 36 1 10.4569 -0.4230 4.3560 37 1 7.8883 3.4126 1.0796 38 1 6.4459 2.5866 1.7284 39 1 4.4103 -1.4476 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046260669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:36 Heat of formation + Delta-G solvation = -17.429178 kcal Electronic energy + Delta-G solvation = -21886.553438 eV Core-core repulsion = 18602.753400 eV Total energy + Delta-G solvation = -3283.800038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.54685 -41.14484 -38.81200 -35.75737 -34.23099 -33.78523 -32.80486 -31.43515 -30.35548 -27.59573 -27.51338 -25.64866 -24.74177 -22.30631 -22.05962 -21.24985 -20.27794 -19.06831 -18.52731 -17.30545 -17.26103 -17.05067 -16.70676 -15.90265 -15.70863 -15.53753 -14.95372 -14.35358 -14.29852 -14.05848 -14.00505 -13.80725 -13.74693 -13.61467 -13.31455 -13.15332 -12.85382 -12.79669 -12.67434 -12.09306 -12.04539 -11.96407 -11.70953 -11.58160 -10.84196 -10.80143 -10.75904 -10.07405 -9.54151 -8.89869 -7.80217 -5.23636 0.35521 1.03716 1.44708 1.45024 1.55866 1.87514 2.13266 2.37590 2.47408 3.29172 3.52698 3.66832 3.69687 3.70352 4.00685 4.05043 4.16558 4.40359 4.52951 4.62325 4.67490 4.74046 4.75892 4.80364 4.85111 4.89260 4.90108 5.00494 5.08008 5.11677 5.32898 5.40158 5.41770 5.60002 5.66550 5.79523 6.00270 6.30220 6.59930 7.10285 7.25854 7.75685 8.39239 9.21271 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.004495 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.612730 B = 6227.379489 C = 6796.367707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.009 4.009 3 C -0.194 4.194 4 C -0.262 4.262 5 C 0.584 3.416 6 O -0.575 6.575 7 N -0.697 5.697 8 C 0.170 3.830 9 C -0.141 4.141 10 C -0.126 4.126 11 C 0.154 3.846 12 N -0.623 5.623 13 C -0.244 4.244 14 H 0.068 0.932 15 C -0.058 4.058 16 N -0.942 5.942 17 Si 0.978 3.022 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.285 1.285 21 C 0.136 3.864 22 C 0.039 3.961 23 O -0.175 6.175 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.153 0.847 28 H 0.409 0.591 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.078 0.922 35 H -0.005 1.005 36 H 0.249 0.751 37 H 0.022 0.978 38 H 0.004 0.996 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 -5.090 -12.418 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.213 4.213 4 C -0.266 4.266 5 C 0.373 3.627 6 O -0.456 6.456 7 N -0.348 5.348 8 C 0.084 3.916 9 C -0.199 4.199 10 C -0.164 4.164 11 C 0.030 3.970 12 N -0.350 5.350 13 C -0.373 4.373 14 H 0.086 0.914 15 C -0.251 4.251 16 N -0.592 5.592 17 Si 0.806 3.194 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.010 3.990 22 C -0.031 4.031 23 O -0.071 6.071 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.171 0.829 28 H 0.246 0.754 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.013 0.987 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.022 0.978 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -14.404 -4.567 -12.246 19.450 hybrid contribution 0.591 0.289 1.341 1.494 sum -13.814 -4.278 -10.905 18.112 Atomic orbital electron populations 1.20527 0.81709 1.05434 1.05115 1.22948 0.95642 0.82733 1.04474 1.22619 0.90226 1.00372 1.08120 1.21562 0.94257 0.94584 1.16232 1.17596 0.82971 0.86947 0.75170 1.90708 1.87663 1.15403 1.51841 1.45707 1.04301 1.10405 1.74426 1.21183 0.84361 0.91936 0.94163 1.21970 1.02654 0.99470 0.95851 1.23215 0.95656 0.99920 0.97622 1.21786 1.00505 0.86219 0.88536 1.44794 1.56816 1.19836 1.13510 1.19403 1.24722 1.02484 0.90707 0.91432 1.25521 1.00439 0.96895 1.02273 1.70004 1.39768 1.12409 1.37002 0.85026 0.77570 0.77391 0.79417 1.19950 1.21624 1.21174 1.21669 0.92590 0.94339 0.90435 1.24995 0.84900 0.94902 0.98316 1.83754 1.16616 1.35707 1.70995 0.88203 0.89093 0.88089 0.82900 0.75433 0.91030 0.92613 0.90250 0.87698 0.89643 0.90446 0.98721 0.94106 0.96053 0.97825 0.73771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.40 71.24 0.74 -0.06 16 2 C -0.01 -0.20 7.28 24.76 0.18 -0.02 16 3 C -0.19 -5.12 10.90 23.65 0.26 -4.86 16 4 C -0.26 -7.53 6.31 -18.99 -0.12 -7.65 16 5 C 0.58 20.44 7.03 86.65 0.61 21.05 16 6 O -0.58 -24.50 13.95 -4.05 -0.06 -24.56 16 7 N -0.70 -21.99 5.14 -420.80 -2.16 -24.16 16 8 C 0.17 6.06 0.81 4.79 0.00 6.06 16 9 C -0.14 -4.36 8.36 71.98 0.60 -3.76 16 10 C -0.13 -4.30 6.09 31.99 0.19 -4.10 16 11 C 0.15 7.33 5.87 86.85 0.51 7.84 16 12 N -0.62 -33.54 3.39 -692.00 -2.35 -35.89 16 13 C -0.24 -14.41 10.27 84.03 0.86 -13.54 16 14 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 15 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 16 N -0.94 -55.46 10.09 21.65 0.22 -55.24 16 17 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 C 0.14 6.40 6.16 86.73 0.53 6.93 16 22 C 0.04 0.83 11.61 67.39 0.78 1.61 16 23 O -0.18 -3.73 10.52 4.50 0.05 -3.69 16 24 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.15 4.00 8.06 -2.92 -0.02 3.97 16 28 H 0.41 10.17 7.46 -92.71 -0.69 9.47 16 29 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 30 H 0.05 1.96 6.27 -2.39 -0.01 1.94 16 31 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.10 2.74 8.06 -2.39 -0.02 2.72 16 33 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 34 H 0.08 4.19 5.87 -2.38 -0.01 4.18 16 35 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.02 1.03 7.82 -2.39 -0.02 1.01 16 38 H 0.00 0.20 6.68 -2.39 -0.02 0.18 16 39 H 0.25 3.12 7.47 -2.91 -0.02 3.10 16 Total: -1.00 -76.59 321.26 3.72 -72.87 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.37 Total: 15.37 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.62 Total: 6.61 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -4.29 Total: -115.28 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.01 Total: -28.25 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -76.59 3.72 -72.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046260669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.445 kcal (2) G-P(sol) polarization free energy of solvation -76.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds