Wall clock time and date at job start Tue Mar 31 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34177 * 125.43717 * 2 1 4 4 C 1.47016 * 105.95324 * 180.13128 * 3 2 1 5 5 C 1.47382 * 127.19261 * 179.86411 * 4 3 2 6 6 O 1.21613 * 119.99937 * 359.70917 * 5 4 3 7 7 N 1.34777 * 119.99755 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72668 * 7 5 4 9 9 C 1.52993 * 110.64032 * 56.85843 * 8 7 5 10 10 C 1.55157 * 110.71900 * 180.02562 * 8 7 5 11 11 C 1.54910 * 101.58203 * 82.86001 * 10 8 7 12 12 N 1.47424 * 104.83113 * 37.00918 * 11 10 8 13 13 C 1.36946 * 125.64758 * 155.90394 * 12 11 10 14 14 H 1.08000 * 119.99698 * 179.97438 * 13 12 11 15 15 C 1.38809 * 119.99918 * 359.97438 * 13 12 11 16 16 N 1.31615 * 120.00253 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99968 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47044 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47188 * 120.00032 * 17 15 13 20 20 H 1.48501 * 109.47500 * 240.00582 * 17 15 13 21 21 C 1.47016 * 108.70583 * 335.87044 * 12 11 10 22 22 C 1.36415 * 105.61558 * 359.60361 * 4 3 2 23 23 O 1.33649 * 108.39982 * 0.24075 * 22 4 3 24 24 H 1.08998 * 109.47007 * 180.28422 * 1 2 3 25 25 H 1.08995 * 109.47279 * 300.28844 * 1 2 3 26 26 H 1.08999 * 109.46811 * 60.28631 * 1 2 3 27 27 H 1.07997 * 127.02414 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00483 * 359.73101 * 7 5 4 29 29 H 1.09004 * 109.47140 * 60.70249 * 9 8 7 30 30 H 1.09003 * 109.47290 * 180.69884 * 9 8 7 31 31 H 1.08997 * 109.47369 * 300.69883 * 9 8 7 32 32 H 1.08999 * 111.00505 * 200.93422 * 10 8 7 33 33 H 1.08995 * 111.00248 * 324.75004 * 10 8 7 34 34 H 1.09008 * 110.36831 * 155.84633 * 11 10 8 35 35 H 1.08994 * 110.37054 * 278.16947 * 11 10 8 36 36 H 0.96996 * 120.00317 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.88327 * 241.64123 * 21 12 11 38 38 H 1.09004 * 109.88540 * 120.47257 * 21 12 11 39 39 H 1.08010 * 125.80176 * 180.25678 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 -0.0032 5 6 4.9025 1.4125 -0.0072 6 8 4.8320 2.6266 -0.0135 7 7 6.1068 0.8074 -0.0094 8 6 7.3309 1.6122 -0.0194 9 6 7.3570 2.5692 1.1740 10 6 8.5868 0.7012 -0.0207 11 6 8.7206 0.3581 -1.5254 12 7 8.3323 1.5934 -2.2301 13 6 8.7160 1.9437 -3.4972 14 1 8.3758 2.8745 -3.9265 15 6 9.5420 1.1024 -4.2297 16 7 9.9562 -0.0322 -3.7068 17 14 10.0648 1.5798 -5.9583 18 1 9.4679 2.8931 -6.3110 19 1 11.5454 1.6774 -6.0186 20 1 9.5971 0.5490 -6.9195 21 6 7.4643 2.3866 -1.3476 22 6 3.5790 -0.7582 0.0042 23 8 2.2853 -1.0935 0.0060 24 1 -0.3633 -1.0276 0.0051 25 1 -0.3633 0.5183 0.8873 26 1 -0.3633 0.5094 -0.8925 27 1 1.9596 2.1230 -0.0004 28 1 6.1631 -0.1610 -0.0043 29 1 7.3319 1.9954 2.1005 30 1 8.2683 3.1663 1.1411 31 1 6.4894 3.2276 1.1308 32 1 9.4629 1.2429 0.3358 33 1 8.4180 -0.1978 0.5720 34 1 9.7507 0.0931 -1.7640 35 1 8.0473 -0.4572 -1.7900 36 1 10.5331 -0.6202 -4.2188 37 1 6.4828 2.5091 -1.8056 38 1 7.9144 3.3623 -1.1642 39 1 4.4104 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046260670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:42 Heat of formation + Delta-G solvation = 6.068416 kcal Electronic energy + Delta-G solvation = -21877.649280 eV Core-core repulsion = 18594.868173 eV Total energy + Delta-G solvation = -3282.781106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -42.59923 -39.69619 -37.19847 -33.99794 -33.16585 -32.52927 -31.38800 -29.85114 -28.66101 -26.76010 -25.66473 -24.14830 -23.26554 -21.11703 -20.38631 -19.94520 -18.85419 -17.75529 -16.84576 -16.37200 -16.02423 -15.52448 -14.69420 -14.54952 -14.44068 -13.68479 -13.56715 -13.31995 -13.24940 -13.00315 -12.84001 -12.73568 -12.24940 -11.97926 -11.97357 -11.69041 -11.54730 -10.92730 -10.86412 -10.40675 -10.33701 -10.04985 -9.96317 -9.76210 -9.64764 -9.30830 -8.70757 -8.64531 -8.56161 -6.79934 -5.64206 -3.04359 1.37241 2.00964 2.74156 3.40168 3.41852 3.47265 3.49780 3.62782 4.44481 4.51431 4.68321 4.89699 5.09865 5.18960 5.21281 5.40077 5.43497 5.47925 5.55167 5.59186 5.68998 5.75334 5.91477 6.06783 6.19548 6.24036 6.28680 6.37929 6.46881 6.54281 6.73316 6.84506 6.93647 7.15724 7.45008 7.65359 7.81103 7.88984 8.36291 8.55553 9.24569 9.85200 10.49980 11.40326 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.004472 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.976558 B = 6258.981236 C = 6825.533053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.162 4.162 4 C -0.223 4.223 5 C 0.586 3.414 6 O -0.534 6.534 7 N -0.704 5.704 8 C 0.160 3.840 9 C -0.152 4.152 10 C -0.146 4.146 11 C 0.152 3.848 12 N -0.604 5.604 13 C -0.216 4.216 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.925 5.925 17 Si 0.914 3.086 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.137 3.863 22 C 0.015 3.985 23 O -0.175 6.175 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.394 0.606 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.010 0.990 36 H 0.250 0.750 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 -3.078 11.231 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 C -0.182 4.182 4 C -0.228 4.228 5 C 0.373 3.627 6 O -0.412 6.412 7 N -0.354 5.354 8 C 0.075 3.925 9 C -0.210 4.210 10 C -0.185 4.185 11 C 0.028 3.972 12 N -0.330 5.330 13 C -0.345 4.345 14 H 0.095 0.905 15 C -0.208 4.208 16 N -0.574 5.574 17 Si 0.745 3.255 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.010 3.990 22 C -0.055 4.055 23 O -0.071 6.071 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.175 0.825 28 H 0.228 0.772 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.899 -2.538 11.040 17.930 hybrid contribution 0.451 -0.210 -0.999 1.116 sum -13.448 -2.748 10.041 17.006 Atomic orbital electron populations 1.20306 0.84806 1.03988 1.03724 1.22286 0.94086 0.83734 1.06910 1.22468 0.90106 0.99663 1.05937 1.21640 0.94919 0.93304 1.12911 1.17193 0.82063 0.87158 0.76251 1.90728 1.87025 1.13515 1.49949 1.45845 1.05102 1.09776 1.74718 1.21361 0.83376 0.91874 0.95915 1.22070 1.03322 0.99505 0.96124 1.23364 0.95602 0.98088 1.01492 1.21940 1.03044 0.87827 0.84438 1.44516 1.55401 1.19699 1.13415 1.19158 1.23342 1.03240 0.88751 0.90479 1.24751 1.00493 0.96751 0.98795 1.69779 1.39576 1.11828 1.36249 0.85998 0.78050 0.77546 0.83952 1.20533 1.21754 1.21827 1.21606 0.94577 0.93801 0.88984 1.24423 0.84141 0.95572 1.01345 1.83713 1.16527 1.35501 1.71353 0.90538 0.89648 0.89582 0.82465 0.77170 0.93198 0.91766 0.90488 0.90437 0.91906 0.87397 0.97235 0.93881 0.95112 0.95090 0.77209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.40 36.01 0.37 -0.12 16 2 C -0.02 -0.24 7.28 -35.74 -0.26 -0.50 16 3 C -0.16 -2.15 10.90 -37.46 -0.41 -2.56 16 4 C -0.22 -3.26 6.31 -103.28 -0.65 -3.91 16 5 C 0.59 10.19 7.03 -12.54 -0.09 10.10 16 6 O -0.53 -10.93 13.98 5.27 0.07 -10.85 16 7 N -0.70 -11.50 5.13 -46.98 -0.24 -11.74 16 8 C 0.16 2.93 0.81 -129.98 -0.10 2.83 16 9 C -0.15 -2.47 8.38 37.15 0.31 -2.16 16 10 C -0.15 -2.66 6.07 -24.58 -0.15 -2.81 16 11 C 0.15 3.61 5.87 -2.53 -0.01 3.60 16 12 N -0.60 -15.83 3.39 -170.07 -0.58 -16.41 16 13 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 14 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 15 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 16 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 17 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 C 0.14 3.13 6.20 -3.06 -0.02 3.11 16 22 C 0.02 0.18 11.61 30.08 0.35 0.53 16 23 O -0.17 -2.08 10.52 7.65 0.08 -1.99 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.39 5.39 7.46 -40.82 -0.30 5.09 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 31 H 0.08 1.37 6.03 -51.93 -0.31 1.06 16 32 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 33 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.11 2.88 5.88 -51.92 -0.31 2.58 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.03 0.77 6.90 -51.93 -0.36 0.41 16 38 H 0.03 0.72 7.81 -51.93 -0.41 0.31 16 39 H 0.21 1.72 7.47 -52.48 -0.39 1.33 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -33.88 321.30 -6.62 -40.50 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.42 Total: 3.28 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.91 Total: 1.27 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.26 Total: -54.45 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.15 Total: -12.85 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.88 -6.62 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046260670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.566 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds