Wall clock time and date at job start Tue Mar 31 2020 00:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34177 * 125.43717 * 2 1 4 4 C 1.47016 * 105.95324 * 180.13128 * 3 2 1 5 5 C 1.47382 * 127.19261 * 179.86411 * 4 3 2 6 6 O 1.21613 * 119.99937 * 359.70917 * 5 4 3 7 7 N 1.34777 * 119.99755 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72668 * 7 5 4 9 9 C 1.52993 * 110.64032 * 56.85843 * 8 7 5 10 10 C 1.55157 * 110.71900 * 180.02562 * 8 7 5 11 11 C 1.54910 * 101.58203 * 82.86001 * 10 8 7 12 12 N 1.47424 * 104.83113 * 37.00918 * 11 10 8 13 13 C 1.36946 * 125.64758 * 155.90394 * 12 11 10 14 14 H 1.08000 * 119.99698 * 179.97438 * 13 12 11 15 15 C 1.38809 * 119.99918 * 359.97438 * 13 12 11 16 16 N 1.31615 * 120.00253 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99968 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47044 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47188 * 120.00032 * 17 15 13 20 20 H 1.48501 * 109.47500 * 240.00582 * 17 15 13 21 21 C 1.47016 * 108.70583 * 335.87044 * 12 11 10 22 22 C 1.36415 * 105.61558 * 359.60361 * 4 3 2 23 23 O 1.33649 * 108.39982 * 0.24075 * 22 4 3 24 24 H 1.08998 * 109.47007 * 180.28422 * 1 2 3 25 25 H 1.08995 * 109.47279 * 300.28844 * 1 2 3 26 26 H 1.08999 * 109.46811 * 60.28631 * 1 2 3 27 27 H 1.07997 * 127.02414 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00483 * 359.73101 * 7 5 4 29 29 H 1.09004 * 109.47140 * 60.70249 * 9 8 7 30 30 H 1.09003 * 109.47290 * 180.69884 * 9 8 7 31 31 H 1.08997 * 109.47369 * 300.69883 * 9 8 7 32 32 H 1.08999 * 111.00505 * 200.93422 * 10 8 7 33 33 H 1.08995 * 111.00248 * 324.75004 * 10 8 7 34 34 H 1.09008 * 110.36831 * 155.84633 * 11 10 8 35 35 H 1.08994 * 110.37054 * 278.16947 * 11 10 8 36 36 H 0.96996 * 120.00317 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.88327 * 241.64123 * 21 12 11 38 38 H 1.09004 * 109.88540 * 120.47257 * 21 12 11 39 39 H 1.08010 * 125.80176 * 180.25678 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 -0.0032 5 6 4.9025 1.4125 -0.0072 6 8 4.8320 2.6266 -0.0135 7 7 6.1068 0.8074 -0.0094 8 6 7.3309 1.6122 -0.0194 9 6 7.3570 2.5692 1.1740 10 6 8.5868 0.7012 -0.0207 11 6 8.7206 0.3581 -1.5254 12 7 8.3323 1.5934 -2.2301 13 6 8.7160 1.9437 -3.4972 14 1 8.3758 2.8745 -3.9265 15 6 9.5420 1.1024 -4.2297 16 7 9.9562 -0.0322 -3.7068 17 14 10.0648 1.5798 -5.9583 18 1 9.4679 2.8931 -6.3110 19 1 11.5454 1.6774 -6.0186 20 1 9.5971 0.5490 -6.9195 21 6 7.4643 2.3866 -1.3476 22 6 3.5790 -0.7582 0.0042 23 8 2.2853 -1.0935 0.0060 24 1 -0.3633 -1.0276 0.0051 25 1 -0.3633 0.5183 0.8873 26 1 -0.3633 0.5094 -0.8925 27 1 1.9596 2.1230 -0.0004 28 1 6.1631 -0.1610 -0.0043 29 1 7.3319 1.9954 2.1005 30 1 8.2683 3.1663 1.1411 31 1 6.4894 3.2276 1.1308 32 1 9.4629 1.2429 0.3358 33 1 8.4180 -0.1978 0.5720 34 1 9.7507 0.0931 -1.7640 35 1 8.0473 -0.4572 -1.7900 36 1 10.5331 -0.6202 -4.2188 37 1 6.4828 2.5091 -1.8056 38 1 7.9144 3.3623 -1.1642 39 1 4.4104 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046260670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:40 Heat of formation + Delta-G solvation = -17.041052 kcal Electronic energy + Delta-G solvation = -21878.651382 eV Core-core repulsion = 18594.868173 eV Total energy + Delta-G solvation = -3283.783208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54659 -41.14651 -38.82133 -35.74952 -34.23068 -33.78047 -32.80720 -31.43274 -30.35635 -27.59679 -27.51573 -25.64532 -24.74883 -22.29352 -22.05602 -21.25075 -20.28602 -19.06527 -18.53120 -17.30488 -17.26210 -17.05850 -16.70719 -15.88564 -15.71334 -15.54322 -14.95065 -14.35037 -14.32038 -14.05779 -13.99743 -13.78222 -13.77297 -13.61063 -13.31271 -13.15509 -12.85432 -12.79657 -12.68632 -12.08789 -12.04604 -11.96485 -11.71914 -11.58388 -10.84179 -10.78467 -10.74684 -10.07775 -9.53833 -8.90026 -7.80189 -5.23677 0.35385 1.03575 1.44897 1.45192 1.55987 1.87811 2.13094 2.37382 2.47457 3.29271 3.52581 3.66660 3.69580 3.70661 4.00379 4.05465 4.16547 4.41232 4.51953 4.62450 4.67256 4.74534 4.75810 4.80259 4.84881 4.89097 4.89482 5.00193 5.08039 5.11522 5.33827 5.40618 5.41884 5.59809 5.66432 5.79476 6.00493 6.30192 6.59889 7.10260 7.25382 7.75579 8.39099 9.21321 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.004472 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.976558 B = 6258.981236 C = 6825.533053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.009 4.009 3 C -0.194 4.194 4 C -0.261 4.261 5 C 0.584 3.416 6 O -0.575 6.575 7 N -0.697 5.697 8 C 0.170 3.830 9 C -0.143 4.143 10 C -0.126 4.126 11 C 0.154 3.846 12 N -0.623 5.623 13 C -0.244 4.244 14 H 0.068 0.932 15 C -0.058 4.058 16 N -0.942 5.942 17 Si 0.978 3.022 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.289 1.289 21 C 0.137 3.863 22 C 0.038 3.962 23 O -0.175 6.175 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.154 0.846 28 H 0.409 0.591 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.078 0.922 35 H -0.004 1.004 36 H 0.249 0.751 37 H 0.002 0.998 38 H 0.022 0.978 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 -4.501 12.228 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.213 4.213 4 C -0.266 4.266 5 C 0.373 3.627 6 O -0.456 6.456 7 N -0.348 5.348 8 C 0.084 3.916 9 C -0.201 4.201 10 C -0.165 4.165 11 C 0.030 3.970 12 N -0.349 5.349 13 C -0.373 4.373 14 H 0.086 0.914 15 C -0.251 4.251 16 N -0.592 5.592 17 Si 0.806 3.194 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.216 1.216 21 C 0.010 3.990 22 C -0.032 4.032 23 O -0.071 6.071 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.171 0.829 28 H 0.245 0.755 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.014 0.986 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.040 0.960 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -14.663 -3.988 12.059 19.399 hybrid contribution 0.628 0.218 -1.346 1.501 sum -14.035 -3.770 10.713 18.055 Atomic orbital electron populations 1.20530 0.81705 1.05436 1.05128 1.22954 0.95648 0.82733 1.04460 1.22598 0.90192 1.00404 1.08137 1.21559 0.94267 0.94551 1.16204 1.17596 0.82951 0.86949 0.75167 1.90701 1.87637 1.15361 1.51875 1.45719 1.04329 1.10412 1.74386 1.21184 0.84316 0.92050 0.94064 1.21988 1.02834 0.99099 0.96199 1.23217 0.95680 0.99768 0.97797 1.21787 1.00642 0.86670 0.87946 1.44793 1.55940 1.20870 1.13338 1.19406 1.24101 1.03383 0.90428 0.91395 1.25521 1.00435 0.96815 1.02347 1.70003 1.39598 1.12325 1.37255 0.85026 0.77591 0.77349 0.79435 1.19937 1.21212 1.21617 1.21671 0.92335 0.94091 0.90887 1.24987 0.84903 0.94931 0.98376 1.83765 1.16616 1.35730 1.70954 0.89025 0.87882 0.88435 0.82859 0.75462 0.90328 0.91141 0.92258 0.89684 0.87741 0.90450 0.98648 0.94105 0.97977 0.95965 0.73844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.40 71.24 0.74 -0.06 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 C -0.19 -5.09 10.90 23.65 0.26 -4.83 16 4 C -0.26 -7.49 6.31 -18.99 -0.12 -7.61 16 5 C 0.58 20.35 7.03 86.65 0.61 20.96 16 6 O -0.57 -24.28 13.98 -4.07 -0.06 -24.34 16 7 N -0.70 -22.03 5.13 -420.80 -2.16 -24.19 16 8 C 0.17 6.07 0.81 4.79 0.00 6.07 16 9 C -0.14 -4.45 8.38 71.98 0.60 -3.84 16 10 C -0.13 -4.32 6.07 31.99 0.19 -4.13 16 11 C 0.15 7.31 5.87 86.86 0.51 7.82 16 12 N -0.62 -33.41 3.39 -691.98 -2.35 -35.75 16 13 C -0.24 -14.36 10.27 84.03 0.86 -13.49 16 14 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 15 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 16 N -0.94 -55.33 10.09 21.65 0.22 -55.11 16 17 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 C 0.14 6.40 6.20 86.73 0.54 6.94 16 22 C 0.04 0.81 11.61 67.39 0.78 1.60 16 23 O -0.18 -3.73 10.52 4.47 0.05 -3.69 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 28 H 0.41 10.28 7.46 -92.71 -0.69 9.59 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.07 2.08 8.12 -2.39 -0.02 2.07 16 31 H 0.06 2.09 6.03 -2.39 -0.01 2.08 16 32 H 0.08 2.84 8.05 -2.39 -0.02 2.82 16 33 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 34 H 0.08 4.18 5.88 -2.38 -0.01 4.17 16 35 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.00 0.12 6.90 -2.39 -0.02 0.10 16 38 H 0.02 1.07 7.81 -2.38 -0.02 1.05 16 39 H 0.25 3.17 7.47 -2.91 -0.02 3.15 16 Total: -1.00 -76.04 321.30 3.73 -72.31 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.37 Total: 15.69 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.63 Total: 6.54 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.29 Total: -115.06 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.01 Total: -28.03 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.04 3.73 -72.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046260670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.272 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds