Wall clock time and date at job start Tue Mar 31 2020 00:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35125 * 125.62022 * 2 1 4 4 C 1.40361 * 107.11930 * 180.02562 * 3 2 1 5 5 C 1.36540 * 106.70707 * 359.97438 * 4 3 2 6 6 C 1.46662 * 125.98940 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99545 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99942 * 179.97438 * 6 5 4 9 9 C 1.47422 * 125.64527 * 180.02562 * 8 6 5 10 10 C 1.54917 * 104.83074 * 204.09182 * 9 8 6 11 11 H 1.08998 * 111.00524 * 81.06438 * 10 9 8 12 12 C 1.52994 * 111.00301 * 204.91369 * 10 9 8 13 13 C 1.55158 * 101.57978 * 322.98980 * 10 9 8 14 14 H 1.09003 * 110.71814 * 277.13679 * 13 10 9 15 15 N 1.46496 * 110.71649 * 154.04271 * 13 10 9 16 16 C 1.36939 * 119.99791 * 154.99972 * 15 13 10 17 17 H 1.08001 * 119.99848 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00080 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00122 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99803 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47307 * 90.00397 * 20 18 16 22 22 H 1.48506 * 109.46707 * 210.00124 * 20 18 16 23 23 H 1.48495 * 109.47266 * 330.00139 * 20 18 16 24 24 C 1.47020 * 125.65281 * 359.95680 * 8 6 5 25 25 O 1.33939 * 125.61528 * 180.32122 * 2 1 3 26 26 H 1.09001 * 109.47182 * 90.00255 * 1 2 3 27 27 H 1.08998 * 109.46866 * 210.00164 * 1 2 3 28 28 H 1.08998 * 109.46809 * 330.00224 * 1 2 3 29 29 H 1.08003 * 126.44009 * 0.03121 * 3 2 1 30 30 H 1.08001 * 126.64886 * 179.97438 * 4 3 2 31 31 H 1.08998 * 110.36873 * 85.25268 * 9 8 6 32 32 H 1.09005 * 110.36491 * 322.92676 * 9 8 6 33 33 H 1.09004 * 109.47256 * 58.54476 * 12 10 9 34 34 H 1.08998 * 109.47483 * 178.54488 * 12 10 9 35 35 H 1.08999 * 109.47641 * 298.54675 * 12 10 9 36 36 H 0.97001 * 120.00701 * 335.00045 * 15 13 10 37 37 H 0.96995 * 120.00430 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.88493 * 59.55540 * 24 8 6 39 39 H 1.09005 * 110.00581 * 298.46850 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7415 -1.6103 -0.0013 7 8 5.8680 -1.1500 -0.0029 8 7 4.5589 -2.9456 -0.0004 9 6 5.6295 -3.9591 -0.0007 10 6 4.9772 -5.2248 -0.6108 11 1 4.9577 -5.1684 -1.6991 12 6 5.6955 -6.4919 -0.1424 13 6 3.5428 -5.1495 -0.0241 14 1 3.5160 -5.5643 0.9835 15 7 2.5901 -5.8438 -0.8939 16 6 1.4274 -6.3457 -0.3728 17 1 1.2130 -6.2300 0.6793 18 6 0.5249 -7.0041 -1.1968 19 7 -0.5929 -7.4860 -0.6961 20 14 0.8961 -7.2047 -3.0165 21 1 1.6382 -8.4726 -3.2335 22 1 -0.3770 -7.2393 -3.7804 23 1 1.7219 -6.0618 -3.4822 24 6 3.2592 -3.6328 0.0024 25 8 2.2870 -1.0888 -0.0061 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.9613 2.1259 0.0005 30 1 4.5114 1.2702 -0.0011 31 1 5.9640 -4.1579 1.0175 32 1 6.4651 -3.6281 -0.6176 33 1 5.6635 -6.5465 0.9458 34 1 5.2014 -7.3669 -0.5648 35 1 6.7333 -6.4651 -0.4744 36 1 2.7828 -5.9480 -1.8388 37 1 -1.2238 -7.9457 -1.2719 38 1 2.6870 -3.3474 -0.8803 39 1 2.7031 -3.3752 0.9038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054367172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:36 Heat of formation + Delta-G solvation = -25.520353 kcal Electronic energy + Delta-G solvation = -21937.774299 eV Core-core repulsion = 18653.623401 eV Total energy + Delta-G solvation = -3284.150898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.74163 -41.07609 -39.08633 -36.04520 -34.47150 -33.92225 -33.05679 -32.72749 -29.58287 -28.88391 -26.90380 -25.67466 -23.52282 -22.79577 -22.07174 -21.66015 -20.87937 -19.55284 -18.73631 -17.75235 -17.32228 -17.14895 -16.36697 -16.18044 -15.78256 -15.17366 -14.91955 -14.68490 -14.37492 -14.24663 -14.07116 -13.96672 -13.86107 -13.72521 -13.61261 -13.21620 -12.96583 -12.95518 -12.79352 -12.29535 -12.16468 -11.96183 -11.82958 -11.58134 -11.41028 -11.06446 -11.00304 -9.93129 -9.45977 -9.38839 -8.02343 -5.37782 -0.04849 1.31047 1.39298 1.41023 1.47571 1.53229 1.97725 2.01717 2.47825 3.20891 3.28805 3.56244 3.62993 3.77622 3.86107 3.92702 4.08011 4.25763 4.34678 4.49450 4.53475 4.58662 4.62957 4.67612 4.70091 4.82673 4.84903 4.88538 5.00831 5.08693 5.10382 5.15313 5.27165 5.44888 5.46959 5.76264 5.90658 6.20183 6.24594 6.82035 7.05126 7.78570 7.97903 9.18449 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.006154 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.758534 B = 4548.536887 C = 6040.794056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.015 3.985 3 C -0.224 4.224 4 C -0.114 4.114 5 C -0.115 4.115 6 C 0.610 3.390 7 O -0.559 6.559 8 N -0.606 5.606 9 C 0.115 3.885 10 C -0.106 4.106 11 H 0.082 0.918 12 C -0.129 4.129 13 C 0.176 3.824 14 H 0.075 0.925 15 N -0.735 5.735 16 C -0.232 4.232 17 H 0.062 0.938 18 C -0.054 4.054 19 N -0.979 5.979 20 Si 0.948 3.052 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.256 1.256 24 C 0.093 3.907 25 O -0.174 6.174 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.190 0.810 30 H 0.170 0.830 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.057 0.943 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.225 14.298 0.453 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 C -0.242 4.242 4 C -0.135 4.135 5 C -0.166 4.166 6 C 0.400 3.600 7 O -0.441 6.441 8 N -0.337 5.337 9 C -0.007 4.007 10 C -0.125 4.125 11 H 0.100 0.900 12 C -0.187 4.187 13 C 0.065 3.935 14 H 0.093 0.907 15 N -0.377 5.377 16 C -0.363 4.363 17 H 0.080 0.920 18 C -0.246 4.246 19 N -0.629 5.629 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.181 1.181 24 C -0.033 4.033 25 O -0.070 6.070 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.207 0.793 30 H 0.187 0.813 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.561 14.191 0.608 16.585 hybrid contribution -0.380 -0.218 -1.006 1.097 sum 8.181 13.973 -0.398 16.196 Atomic orbital electron populations 1.20649 0.82260 1.05686 1.05113 1.23753 0.95909 0.83938 1.00183 1.21929 0.91019 1.01034 1.10225 1.22210 0.99987 0.92071 0.99212 1.21917 0.82155 0.95029 1.17547 1.16419 0.86275 0.80519 0.76761 1.90806 1.23130 1.76016 1.54160 1.48422 1.10016 1.04520 1.70759 1.22467 0.89974 0.85933 1.02308 1.22633 0.94140 0.95161 1.00616 0.89977 1.21596 1.00338 0.95005 1.01759 1.21411 0.88645 0.88237 0.95164 0.90695 1.42622 1.20605 1.66984 1.07456 1.19011 0.95096 1.27649 0.94501 0.91971 1.25393 0.96396 1.00714 1.02116 1.69863 1.11939 1.44490 1.36569 0.85526 0.76994 0.78769 0.81151 1.20229 1.22495 1.18101 1.22920 0.83721 0.95402 1.01230 1.84190 1.16028 1.36036 1.70772 0.88432 0.90743 0.85847 0.79282 0.81268 0.89474 0.89550 0.91767 0.92773 0.90269 0.79881 0.93309 0.92414 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.41 71.24 0.74 -0.61 16 2 C 0.01 0.36 7.31 24.97 0.18 0.54 16 3 C -0.22 -4.74 10.77 22.07 0.24 -4.50 16 4 C -0.11 -2.99 10.62 22.39 0.24 -2.76 16 5 C -0.12 -3.69 6.95 24.07 0.17 -3.52 16 6 C 0.61 21.14 7.82 86.44 0.68 21.81 16 7 O -0.56 -21.03 17.12 -4.33 -0.07 -21.11 16 8 N -0.61 -19.77 3.33 -816.51 -2.72 -22.49 16 9 C 0.11 3.11 6.38 86.86 0.55 3.66 16 10 C -0.11 -2.94 3.27 -9.40 -0.03 -2.97 16 11 H 0.08 2.32 8.01 -2.39 -0.02 2.30 16 12 C -0.13 -3.04 9.29 71.98 0.67 -2.37 16 13 C 0.18 6.25 3.08 46.18 0.14 6.39 16 14 H 0.08 2.74 7.96 -2.39 -0.02 2.72 16 15 N -0.73 -32.10 4.96 -317.34 -1.58 -33.68 16 16 C -0.23 -12.47 10.44 84.03 0.88 -11.59 16 17 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 18 C -0.05 -3.06 5.50 84.86 0.47 -2.59 16 19 N -0.98 -60.53 13.97 21.65 0.30 -60.23 16 20 Si 0.95 43.83 27.73 68.60 1.90 45.74 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 23 H -0.26 -10.81 6.52 99.48 0.65 -10.16 16 24 C 0.09 3.29 5.30 86.73 0.46 3.75 16 25 O -0.17 -5.53 8.28 -5.10 -0.04 -5.58 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.09 2.11 8.04 -2.39 -0.02 2.09 16 32 H 0.09 2.22 8.04 -2.38 -0.02 2.20 16 33 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.37 15.59 5.62 -92.71 -0.52 15.07 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.06 2.25 7.56 -2.39 -0.02 2.24 16 39 H 0.06 2.14 7.80 -2.38 -0.02 2.12 16 Total: -1.00 -69.51 327.59 3.65 -65.86 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.47 Total: 26.23 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.38 Total: 5.24 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -3.99 Total: -116.39 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.12 Total: -26.68 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.74 kcal Total: -69.51 3.65 -65.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054367172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.343 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds