Wall clock time and date at job start Tue Mar 31 2020 00:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35134 * 125.61613 * 2 1 4 4 C 1.40355 * 107.11750 * 180.02562 * 3 2 1 5 5 C 1.36549 * 106.70896 * 0.02562 * 4 3 2 6 6 C 1.46650 * 125.98858 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00367 * 0.02838 * 6 5 4 8 8 N 1.34784 * 119.99750 * 180.02562 * 6 5 4 9 9 C 1.47015 * 125.65074 * 0.02592 * 8 6 5 10 10 C 1.54323 * 107.27419 * 181.02010 * 9 8 6 11 11 H 1.08998 * 110.71991 * 263.65506 * 10 9 8 12 12 N 1.46498 * 110.72064 * 140.55626 * 10 9 8 13 13 C 1.36941 * 119.99995 * 86.45666 * 12 10 9 14 14 H 1.07995 * 120.00014 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99776 * 180.02562 * 13 12 10 16 16 N 1.31615 * 120.00276 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00001 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47293 * 89.99450 * 17 15 13 19 19 H 1.48492 * 109.47224 * 210.00016 * 17 15 13 20 20 H 1.48510 * 109.46893 * 330.00018 * 17 15 13 21 21 C 1.55160 * 102.93967 * 22.19512 * 10 9 8 22 22 H 1.08995 * 111.00421 * 82.57129 * 21 10 9 23 23 C 1.53002 * 111.00356 * 206.42435 * 21 10 9 24 24 C 1.47423 * 125.64430 * 179.71352 * 8 6 5 25 25 O 1.33925 * 125.61596 * 180.02562 * 2 1 3 26 26 H 1.08989 * 109.46827 * 89.99817 * 1 2 3 27 27 H 1.09002 * 109.46803 * 210.00116 * 1 2 3 28 28 H 1.09002 * 109.46559 * 329.99418 * 1 2 3 29 29 H 1.08003 * 126.43619 * 359.76331 * 3 2 1 30 30 H 1.08003 * 126.64658 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.88110 * 300.44206 * 9 8 6 32 32 H 1.09001 * 109.88414 * 61.60553 * 9 8 6 33 33 H 0.97007 * 120.00246 * 266.45565 * 12 10 9 34 34 H 0.97002 * 120.00631 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.47130 * 59.99444 * 23 21 10 36 36 H 1.09000 * 109.47075 * 179.97438 * 23 21 10 37 37 H 1.09003 * 109.46960 * 300.00179 * 23 21 10 38 38 H 1.09001 * 110.37124 * 274.74455 * 24 8 6 39 39 H 1.08998 * 110.37076 * 37.07561 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6532 -0.0006 5 6 3.5824 -0.7116 -0.0015 6 6 4.7415 -1.6100 -0.0029 7 8 5.8680 -1.1498 -0.0028 8 7 4.5590 -2.9454 -0.0043 9 6 3.2594 -3.6327 -0.0050 10 6 3.5431 -5.1494 0.0197 11 1 3.5117 -5.5641 -0.9878 12 7 2.5910 -5.8406 0.8926 13 6 1.3820 -6.2515 0.3977 14 1 1.1307 -6.0664 -0.6361 15 6 0.4797 -6.9059 1.2250 16 7 0.7862 -7.1320 2.4848 17 14 -1.1691 -7.4671 0.5498 18 1 -1.0411 -8.8460 0.0137 19 1 -2.1807 -7.4505 1.6367 20 1 -1.5963 -6.5508 -0.5381 21 6 4.9784 -5.2249 0.6042 22 1 4.9605 -5.1691 1.6926 23 6 5.6960 -6.4918 0.1340 24 6 5.6297 -3.9588 -0.0117 25 8 2.2870 -1.0887 -0.0005 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8900 0.5140 29 1 1.9612 2.1260 -0.0036 30 1 4.5113 1.2705 -0.0011 31 1 2.6889 -3.3477 0.8790 32 1 2.7039 -3.3742 -0.9065 33 1 2.8169 -6.0072 1.8212 34 1 0.1559 -7.5897 3.0629 35 1 5.7613 -6.4897 -0.9540 36 1 6.6998 -6.5193 0.5579 37 1 5.1381 -7.3686 0.4628 38 1 5.9579 -4.1565 -1.0322 39 1 6.4690 -3.6286 0.6004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054367173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:43 Heat of formation + Delta-G solvation = -9.176001 kcal Electronic energy + Delta-G solvation = -21897.123228 eV Core-core repulsion = 18613.681074 eV Total energy + Delta-G solvation = -3283.442154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.62337 -39.64355 -37.56783 -34.15442 -33.30118 -32.49695 -31.85997 -30.73208 -27.87173 -27.46391 -25.76432 -24.03806 -22.28494 -21.62949 -20.84863 -19.97736 -19.63274 -17.39524 -17.15102 -16.48977 -15.95606 -15.70722 -15.03736 -14.61394 -14.13646 -13.59497 -13.36884 -13.31234 -13.19393 -13.04841 -12.99789 -12.88448 -12.62874 -12.41179 -12.14781 -11.89032 -11.54956 -11.16765 -11.02531 -10.75893 -10.63929 -10.29503 -10.13877 -9.98917 -9.95568 -9.75200 -9.02763 -8.60090 -8.25759 -7.11498 -5.86909 -3.17699 1.15028 2.34953 2.68841 3.25134 3.33042 3.37226 3.42995 3.44322 4.47394 4.54964 4.77497 4.92839 5.00771 5.13162 5.19985 5.28322 5.36546 5.54048 5.56803 5.61377 5.65662 5.76153 5.79535 5.84034 5.90043 5.97178 6.00085 6.19063 6.24952 6.39258 6.40212 6.47907 6.51692 6.59127 6.86935 7.00990 7.60749 7.67450 8.19554 8.30466 9.42426 9.96022 10.31267 11.35046 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.006134 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.392729 B = 4563.593779 C = 6359.655601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.019 3.981 3 C -0.230 4.230 4 C -0.125 4.125 5 C -0.071 4.071 6 C 0.611 3.389 7 O -0.538 6.538 8 N -0.603 5.603 9 C 0.075 3.925 10 C 0.177 3.823 11 H 0.067 0.933 12 N -0.710 5.710 13 C -0.247 4.247 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.907 3.093 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.114 4.114 22 H 0.085 0.915 23 C -0.133 4.133 24 C 0.114 3.886 25 O -0.148 6.148 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.789 11.723 -5.267 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C -0.249 4.249 4 C -0.146 4.146 5 C -0.123 4.123 6 C 0.400 3.600 7 O -0.418 6.418 8 N -0.334 5.334 9 C -0.050 4.050 10 C 0.065 3.935 11 H 0.085 0.915 12 N -0.350 5.350 13 C -0.378 4.378 14 H 0.090 0.910 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.133 4.133 22 H 0.103 0.897 23 C -0.191 4.191 24 C -0.008 4.008 25 O -0.043 6.043 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.222 0.778 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.112 11.623 -5.344 13.437 hybrid contribution -0.973 -0.053 0.022 0.974 sum 3.139 11.570 -5.322 13.117 Atomic orbital electron populations 1.20430 0.84692 1.04674 1.03925 1.22897 0.94473 0.84301 1.01685 1.21523 0.92328 0.99593 1.11446 1.21858 0.98468 0.92815 1.01415 1.21986 0.82128 0.94313 1.13886 1.16230 0.85969 0.80409 0.77389 1.90832 1.22239 1.75756 1.52986 1.48435 1.10244 1.04186 1.70565 1.23434 0.83202 0.96220 1.02172 1.21268 0.88098 0.88738 0.95428 0.91502 1.42353 1.15648 1.66577 1.10454 1.19237 0.92444 1.30796 0.95326 0.90993 1.24753 0.98779 1.01159 0.95731 1.69657 1.36378 1.46805 1.04830 0.86203 0.83710 0.78655 0.77676 1.21593 1.21730 1.20672 1.22679 0.96269 0.93446 1.00942 0.89655 1.21612 0.99419 0.97314 1.00751 1.22384 0.90379 0.87101 1.00957 1.84222 1.15820 1.34352 1.69926 0.89643 0.89661 0.89150 0.82918 0.82506 0.90430 0.92047 0.77843 0.93342 0.92792 0.93083 0.91249 0.91211 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.41 36.01 0.38 -0.39 16 2 C 0.02 0.26 7.31 -35.41 -0.26 0.00 16 3 C -0.23 -2.80 10.77 -39.89 -0.43 -3.23 16 4 C -0.12 -1.78 10.62 -39.40 -0.42 -2.20 16 5 C -0.07 -1.18 6.95 -36.80 -0.26 -1.44 16 6 C 0.61 11.04 7.82 -12.86 -0.10 10.94 16 7 O -0.54 -10.57 17.12 5.20 0.09 -10.48 16 8 N -0.60 -10.43 3.32 -171.93 -0.57 -11.00 16 9 C 0.08 1.38 5.30 -3.07 -0.02 1.37 16 10 C 0.18 3.34 3.05 -66.10 -0.20 3.13 16 11 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 12 N -0.71 -16.69 5.18 -51.65 -0.27 -16.96 16 13 C -0.25 -6.47 9.98 -15.06 -0.15 -6.62 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 17 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.11 -1.80 3.26 -88.35 -0.29 -2.09 16 22 H 0.09 1.43 8.00 -51.93 -0.42 1.02 16 23 C -0.13 -1.85 9.31 37.16 0.35 -1.50 16 24 C 0.11 1.74 6.38 -2.41 -0.02 1.72 16 25 O -0.15 -2.42 8.28 4.99 0.04 -2.38 16 26 H 0.09 0.69 8.14 -51.94 -0.42 0.26 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.16 2.00 8.06 -52.48 -0.42 1.57 16 31 H 0.08 1.59 7.56 -51.93 -0.39 1.20 16 32 H 0.06 1.12 7.79 -51.93 -0.40 0.72 16 33 H 0.39 9.76 7.71 -40.82 -0.31 9.44 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 39 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -30.68 330.65 -7.24 -37.92 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.70 Total: 8.29 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.51 Total: -0.60 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.11 Total: -54.17 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.13 Total: -12.86 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.68 -7.24 -37.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054367173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.745 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds