Wall clock time and date at job start Tue Mar 31 2020 00:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35134 * 125.61613 * 2 1 4 4 C 1.40355 * 107.11750 * 180.02562 * 3 2 1 5 5 C 1.36549 * 106.70896 * 0.02562 * 4 3 2 6 6 C 1.46650 * 125.98858 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00367 * 0.02838 * 6 5 4 8 8 N 1.34784 * 119.99750 * 180.02562 * 6 5 4 9 9 C 1.47015 * 125.65074 * 0.02592 * 8 6 5 10 10 C 1.54323 * 107.27419 * 181.02010 * 9 8 6 11 11 H 1.08998 * 110.71991 * 263.65506 * 10 9 8 12 12 N 1.46498 * 110.72064 * 140.55626 * 10 9 8 13 13 C 1.36941 * 119.99995 * 86.45666 * 12 10 9 14 14 H 1.07995 * 120.00014 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99776 * 180.02562 * 13 12 10 16 16 N 1.31615 * 120.00276 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00001 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47293 * 89.99450 * 17 15 13 19 19 H 1.48492 * 109.47224 * 210.00016 * 17 15 13 20 20 H 1.48510 * 109.46893 * 330.00018 * 17 15 13 21 21 C 1.55160 * 102.93967 * 22.19512 * 10 9 8 22 22 H 1.08995 * 111.00421 * 82.57129 * 21 10 9 23 23 C 1.53002 * 111.00356 * 206.42435 * 21 10 9 24 24 C 1.47423 * 125.64430 * 179.71352 * 8 6 5 25 25 O 1.33925 * 125.61596 * 180.02562 * 2 1 3 26 26 H 1.08989 * 109.46827 * 89.99817 * 1 2 3 27 27 H 1.09002 * 109.46803 * 210.00116 * 1 2 3 28 28 H 1.09002 * 109.46559 * 329.99418 * 1 2 3 29 29 H 1.08003 * 126.43619 * 359.76331 * 3 2 1 30 30 H 1.08003 * 126.64658 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.88110 * 300.44206 * 9 8 6 32 32 H 1.09001 * 109.88414 * 61.60553 * 9 8 6 33 33 H 0.97007 * 120.00246 * 266.45565 * 12 10 9 34 34 H 0.97002 * 120.00631 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.47130 * 59.99444 * 23 21 10 36 36 H 1.09000 * 109.47075 * 179.97438 * 23 21 10 37 37 H 1.09003 * 109.46960 * 300.00179 * 23 21 10 38 38 H 1.09001 * 110.37124 * 274.74455 * 24 8 6 39 39 H 1.08998 * 110.37076 * 37.07561 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6532 -0.0006 5 6 3.5824 -0.7116 -0.0015 6 6 4.7415 -1.6100 -0.0029 7 8 5.8680 -1.1498 -0.0028 8 7 4.5590 -2.9454 -0.0043 9 6 3.2594 -3.6327 -0.0050 10 6 3.5431 -5.1494 0.0197 11 1 3.5117 -5.5641 -0.9878 12 7 2.5910 -5.8406 0.8926 13 6 1.3820 -6.2515 0.3977 14 1 1.1307 -6.0664 -0.6361 15 6 0.4797 -6.9059 1.2250 16 7 0.7862 -7.1320 2.4848 17 14 -1.1691 -7.4671 0.5498 18 1 -1.0411 -8.8460 0.0137 19 1 -2.1807 -7.4505 1.6367 20 1 -1.5963 -6.5508 -0.5381 21 6 4.9784 -5.2249 0.6042 22 1 4.9605 -5.1691 1.6926 23 6 5.6960 -6.4918 0.1340 24 6 5.6297 -3.9588 -0.0117 25 8 2.2870 -1.0887 -0.0005 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8900 0.5140 29 1 1.9612 2.1260 -0.0036 30 1 4.5113 1.2705 -0.0011 31 1 2.6889 -3.3477 0.8790 32 1 2.7039 -3.3742 -0.9065 33 1 2.8169 -6.0072 1.8212 34 1 0.1559 -7.5897 3.0629 35 1 5.7613 -6.4897 -0.9540 36 1 6.6998 -6.5193 0.5579 37 1 5.1381 -7.3686 0.4628 38 1 5.9579 -4.1565 -1.0322 39 1 6.4690 -3.6286 0.6004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054367173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:43 Heat of formation + Delta-G solvation = -28.350736 kcal Electronic energy + Delta-G solvation = -21897.954707 eV Core-core repulsion = 18613.681074 eV Total energy + Delta-G solvation = -3284.273633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.73291 -41.03823 -39.02273 -35.92696 -34.45746 -33.88150 -32.91304 -32.47366 -29.25497 -28.83897 -26.88942 -25.90758 -23.61850 -22.80719 -22.08543 -21.43193 -20.86948 -19.09520 -18.71553 -17.72346 -17.32174 -17.11513 -16.35289 -16.13351 -15.60238 -15.37887 -14.81778 -14.66469 -14.32278 -14.10108 -14.04955 -13.93897 -13.86222 -13.68753 -13.46124 -13.04027 -12.89070 -12.83775 -12.78763 -12.25756 -12.15653 -12.05154 -11.71073 -11.55994 -11.37407 -11.05782 -10.95909 -9.91128 -9.44146 -9.08155 -7.94561 -5.24940 -0.03935 1.31779 1.49836 1.50128 1.55068 1.58910 1.99794 2.02672 2.56599 3.28906 3.37069 3.65058 3.77695 3.82873 3.88460 3.93560 4.19614 4.29641 4.40939 4.49899 4.55280 4.60445 4.63749 4.68726 4.70505 4.84773 4.86006 4.90035 5.06577 5.09554 5.11580 5.16930 5.31149 5.45650 5.47987 5.54162 5.91723 6.24060 6.28180 6.83394 7.33382 8.03559 8.28626 9.28353 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.006134 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.392729 B = 4563.593779 C = 6359.655601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.014 3.986 3 C -0.224 4.224 4 C -0.115 4.115 5 C -0.115 4.115 6 C 0.608 3.392 7 O -0.561 6.561 8 N -0.606 5.606 9 C 0.095 3.905 10 C 0.172 3.828 11 H 0.073 0.927 12 N -0.720 5.720 13 C -0.242 4.242 14 H 0.079 0.921 15 C -0.068 4.068 16 N -0.967 5.967 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.298 1.298 20 H -0.268 1.268 21 C -0.103 4.103 22 H 0.072 0.928 23 C -0.127 4.127 24 C 0.116 3.884 25 O -0.173 6.173 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.190 0.810 30 H 0.169 0.831 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.375 0.625 34 H 0.251 0.749 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 13.073 -6.614 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 C -0.242 4.242 4 C -0.135 4.135 5 C -0.166 4.166 6 C 0.399 3.601 7 O -0.443 6.443 8 N -0.337 5.337 9 C -0.031 4.031 10 C 0.061 3.939 11 H 0.091 0.909 12 N -0.359 5.359 13 C -0.374 4.374 14 H 0.097 0.903 15 C -0.261 4.261 16 N -0.617 5.617 17 Si 0.798 3.202 18 H -0.215 1.215 19 H -0.225 1.225 20 H -0.193 1.193 21 C -0.123 4.123 22 H 0.090 0.910 23 C -0.184 4.184 24 C -0.006 4.006 25 O -0.070 6.070 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.208 0.792 30 H 0.187 0.813 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.208 0.792 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.837 12.991 -6.735 15.128 hybrid contribution -0.873 -0.354 0.413 1.029 sum 2.964 12.637 -6.322 14.438 Atomic orbital electron populations 1.20652 0.82144 1.05559 1.05288 1.23780 0.95978 0.83920 1.00144 1.21929 0.90974 1.01056 1.10283 1.22210 1.00033 0.92034 0.99267 1.21905 0.82150 0.95011 1.17536 1.16456 0.86325 0.80567 0.76800 1.90798 1.23163 1.76063 1.54287 1.48458 1.10133 1.04504 1.70590 1.22993 0.83553 0.95676 1.00837 1.21449 0.88975 0.88363 0.95078 0.90942 1.42456 1.15879 1.67115 1.10429 1.19603 0.93128 1.29180 0.95460 0.90329 1.25506 1.02185 1.02309 0.96075 1.69810 1.37368 1.48467 1.06092 0.85212 0.79702 0.78254 0.77028 1.21457 1.22470 1.19271 1.22587 0.94482 0.95078 1.00115 0.90950 1.21567 1.00035 0.94993 1.01822 1.22503 0.89914 0.85988 1.02179 1.84192 1.16010 1.36045 1.70730 0.87907 0.90922 0.86053 0.79239 0.81306 0.93042 0.92169 0.79203 0.94007 0.91253 0.90645 0.93271 0.89203 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.41 71.24 0.74 -0.59 16 2 C 0.01 0.35 7.31 24.97 0.18 0.54 16 3 C -0.22 -4.88 10.77 22.07 0.24 -4.64 16 4 C -0.11 -3.12 10.62 22.39 0.24 -2.88 16 5 C -0.11 -3.81 6.95 24.07 0.17 -3.64 16 6 C 0.61 22.06 7.82 86.44 0.68 22.74 16 7 O -0.56 -21.99 17.12 -4.31 -0.07 -22.06 16 8 N -0.61 -20.94 3.32 -816.08 -2.71 -23.65 16 9 C 0.10 3.54 5.30 86.73 0.46 4.00 16 10 C 0.17 6.48 3.05 46.18 0.14 6.62 16 11 H 0.07 2.67 8.02 -2.39 -0.02 2.65 16 12 N -0.72 -34.39 5.18 -317.33 -1.64 -36.03 16 13 C -0.24 -12.73 9.98 84.03 0.84 -11.89 16 14 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 15 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 16 N -0.97 -57.32 13.06 21.65 0.28 -57.04 16 17 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 C -0.10 -3.20 3.26 -9.32 -0.03 -3.23 16 22 H 0.07 2.46 8.00 -2.39 -0.02 2.44 16 23 C -0.13 -3.32 9.31 71.98 0.67 -2.65 16 24 C 0.12 3.40 6.38 86.94 0.55 3.95 16 25 O -0.17 -5.67 8.28 -5.06 -0.04 -5.71 16 26 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.05 2.18 7.56 -2.39 -0.02 2.17 16 32 H 0.06 2.22 7.79 -2.39 -0.02 2.21 16 33 H 0.38 19.53 7.71 -92.70 -0.72 18.81 16 34 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 2.30 7.99 -2.39 -0.02 2.28 16 39 H 0.08 2.35 8.03 -2.39 -0.02 2.33 16 Total: -1.00 -67.07 330.65 3.52 -63.56 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.34 Total: 29.54 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.34 Total: 5.04 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -4.07 Total: -116.72 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.12 Total: -27.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -67.07 3.52 -63.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054367173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.207 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds