Wall clock time and date at job start Tue Mar 31 2020 00:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33659 * 125.80492 * 2 1 4 4 C 1.34218 * 110.90857 * 180.26968 * 3 2 1 5 5 C 1.34175 * 109.12387 * 359.75780 * 4 3 2 6 6 C 1.36416 * 125.80190 * 179.85655 * 2 1 3 7 7 C 1.47386 * 127.19165 * 0.02562 * 6 2 1 8 8 O 1.21613 * 119.99638 * 335.54731 * 7 6 2 9 9 N 1.34768 * 120.00257 * 155.55129 * 7 6 2 10 10 C 1.47018 * 125.65134 * 174.42938 * 9 7 6 11 11 C 1.54328 * 107.27360 * 178.97601 * 10 9 7 12 12 H 1.08997 * 110.71727 * 96.34854 * 11 10 9 13 13 C 1.53008 * 110.71789 * 219.44451 * 11 10 9 14 14 C 1.55160 * 103.09997 * 337.89519 * 11 10 9 15 15 H 1.08996 * 111.00338 * 277.33563 * 14 11 10 16 16 N 1.46501 * 111.00166 * 153.48818 * 14 11 10 17 17 C 1.36937 * 120.00021 * 154.99889 * 16 14 11 18 18 H 1.08001 * 119.99585 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00186 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00392 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00013 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47164 * 89.99696 * 21 19 17 23 23 H 1.48495 * 109.47060 * 209.99687 * 21 19 17 24 24 H 1.48504 * 109.46945 * 329.99731 * 21 19 17 25 25 C 1.47424 * 125.64752 * 354.46842 * 9 7 6 26 26 H 1.09005 * 109.47072 * 270.14191 * 1 2 3 27 27 H 1.09002 * 109.47038 * 30.14163 * 1 2 3 28 28 H 1.09004 * 109.47198 * 150.14319 * 1 2 3 29 29 H 1.07999 * 125.43220 * 179.76240 * 4 3 2 30 30 H 1.08000 * 127.02296 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.88111 * 59.56009 * 10 9 7 32 32 H 1.08995 * 110.01093 * 298.46793 * 10 9 7 33 33 H 1.08999 * 109.47168 * 56.15660 * 13 11 10 34 34 H 1.08995 * 109.46573 * 296.15439 * 13 11 10 35 35 H 1.09000 * 109.46518 * 176.15526 * 13 11 10 36 36 H 0.97000 * 119.99842 * 335.00193 * 16 14 11 37 37 H 0.96999 * 120.00167 * 180.02562 * 20 19 17 38 38 H 1.09001 * 110.37040 * 322.93119 * 25 9 7 39 39 H 1.09001 * 110.36817 * 85.14656 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7390 -0.0059 5 6 3.6849 -0.5991 -0.0046 6 6 2.3050 -1.1064 0.0028 7 6 1.8739 -2.5158 0.0058 8 8 0.7791 -2.8158 0.4420 9 7 2.6930 -3.4720 -0.4748 10 6 2.4408 -4.9197 -0.4272 11 6 3.6334 -5.6155 -1.1165 12 1 4.3662 -5.9445 -0.3799 13 6 3.1549 -6.7951 -1.9655 14 6 4.2225 -4.4959 -2.0149 15 1 3.6747 -4.4199 -2.9541 16 7 5.6504 -4.7150 -2.2584 17 6 6.2418 -4.1940 -3.3783 18 1 5.6554 -3.6220 -4.0821 19 6 7.5948 -4.4011 -3.6088 20 7 8.1631 -3.9008 -4.6854 21 14 8.6088 -5.3911 -2.3918 22 1 8.5780 -6.8259 -2.7735 23 1 10.0120 -4.9052 -2.4059 24 1 8.0425 -5.2293 -1.0285 25 6 3.9907 -3.2398 -1.1347 26 1 -0.3633 0.0025 1.0277 27 1 -0.3633 0.8887 -0.5160 28 1 -0.3634 -0.8913 -0.5116 29 1 4.4172 1.4284 -0.0108 30 1 4.5928 -1.1841 -0.0079 31 1 1.5180 -5.1529 -0.9584 32 1 2.3662 -5.2514 0.6084 33 1 2.4147 -6.4475 -2.6861 34 1 2.7064 -7.5495 -1.3191 35 1 4.0028 -7.2286 -2.4958 36 1 6.1769 -5.2291 -1.6265 37 1 9.1085 -4.0459 -4.8467 38 1 3.9462 -2.3442 -1.7545 39 1 4.7829 -3.1472 -0.3918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054369389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:48 Heat of formation + Delta-G solvation = -5.213039 kcal Electronic energy + Delta-G solvation = -21893.318641 eV Core-core repulsion = 18610.048334 eV Total energy + Delta-G solvation = -3283.270307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.54362 -39.70830 -37.58468 -34.24914 -33.24363 -32.39456 -31.77313 -31.06280 -28.00595 -27.34618 -26.06232 -24.00109 -22.80253 -21.25544 -21.06473 -20.04913 -18.82557 -17.62615 -17.36193 -16.44439 -16.05078 -15.94092 -15.28337 -14.54028 -14.19902 -14.04231 -13.41863 -13.33966 -13.24786 -13.12043 -13.04160 -12.75392 -12.64933 -12.61334 -12.03036 -11.84844 -11.71849 -11.43207 -11.16599 -10.79964 -10.68257 -10.42141 -10.06650 -9.88428 -9.71061 -9.68251 -9.07841 -8.64419 -8.33010 -7.43056 -5.88356 -3.26526 1.42123 2.12082 2.79294 3.18096 3.29016 3.32088 3.38440 3.40764 4.48172 4.51606 4.60083 4.90075 4.97652 5.00862 5.08804 5.19934 5.38814 5.41045 5.49106 5.56792 5.59530 5.67993 5.70144 5.76065 5.77243 5.87393 6.06755 6.09309 6.11146 6.27951 6.31013 6.33653 6.44590 6.53294 6.71786 7.03552 7.72425 7.86150 8.29923 8.33446 9.06663 9.78683 9.96892 11.29263 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.005262 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.188887 B = 5319.825399 C = 6421.775235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.065 3.935 3 O -0.178 6.178 4 C -0.043 4.043 5 C -0.181 4.181 6 C -0.235 4.235 7 C 0.602 3.398 8 O -0.553 6.553 9 N -0.606 5.606 10 C 0.118 3.882 11 C -0.119 4.119 12 H 0.081 0.919 13 C -0.135 4.135 14 C 0.182 3.818 15 H 0.078 0.922 16 N -0.733 5.733 17 C -0.253 4.253 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.882 3.118 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.074 3.926 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.208 0.792 30 H 0.162 0.838 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.697 4.413 9.950 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.012 3.988 3 O -0.074 6.074 4 C -0.109 4.109 5 C -0.200 4.200 6 C -0.240 4.240 7 C 0.393 3.607 8 O -0.434 6.434 9 N -0.339 5.339 10 C -0.004 4.004 11 C -0.139 4.139 12 H 0.099 0.901 13 C -0.193 4.193 14 C 0.070 3.930 15 H 0.096 0.904 16 N -0.374 5.374 17 C -0.382 4.382 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.575 5.575 21 Si 0.712 3.288 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.052 4.052 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.225 0.775 30 H 0.179 0.821 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.321 4.700 9.949 16.519 hybrid contribution 1.382 -0.739 0.837 1.777 sum -10.939 3.961 10.785 15.864 Atomic orbital electron populations 1.20446 0.84016 1.04312 1.04211 1.22682 0.93956 0.83212 0.98946 1.83737 1.17248 1.34838 1.71622 1.23877 0.83315 0.96490 1.07184 1.23148 0.97005 0.94461 1.05411 1.21096 0.93552 0.93591 1.15722 1.16865 0.83219 0.83364 0.77291 1.90739 1.20997 1.82850 1.48797 1.48227 1.21428 1.06286 1.57969 1.21958 0.98511 0.79511 1.00456 1.22570 0.96463 0.96506 0.98329 0.90054 1.21674 1.01601 0.96762 0.99217 1.21387 0.86304 0.89884 0.95441 0.90446 1.42636 1.04236 1.64144 1.26407 1.19069 0.92927 1.27991 0.98236 0.89002 1.24662 0.96536 1.00107 0.97227 1.69694 1.11659 1.49177 1.27001 0.86596 0.80297 0.80571 0.81291 1.20910 1.21648 1.20290 1.23583 0.83002 1.02431 0.96180 0.89346 0.90499 0.88397 0.77516 0.82066 0.91337 0.91923 0.92533 0.93088 0.91444 0.80254 0.92880 0.90453 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 9.76 36.00 0.35 -0.43 16 2 C 0.06 0.88 7.37 -34.97 -0.26 0.62 16 3 O -0.18 -2.28 10.52 7.63 0.08 -2.20 16 4 C -0.04 -0.51 12.03 29.30 0.35 -0.15 16 5 C -0.18 -2.49 9.25 -37.45 -0.35 -2.84 16 6 C -0.24 -3.60 5.91 -103.27 -0.61 -4.21 16 7 C 0.60 10.18 7.70 -12.54 -0.10 10.08 16 8 O -0.55 -10.24 15.88 5.27 0.08 -10.16 16 9 N -0.61 -9.75 3.33 -171.67 -0.57 -10.32 16 10 C 0.12 1.72 6.47 -3.06 -0.02 1.70 16 11 C -0.12 -1.74 3.19 -88.78 -0.28 -2.02 16 12 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 13 C -0.13 -1.79 9.14 37.16 0.34 -1.45 16 14 C 0.18 3.24 3.17 -65.66 -0.21 3.03 16 15 H 0.08 1.46 8.00 -51.93 -0.42 1.04 16 16 N -0.73 -15.83 5.06 -51.24 -0.26 -16.09 16 17 C -0.25 -6.63 10.44 -15.06 -0.16 -6.79 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 20 N -0.93 -27.89 13.97 55.49 0.78 -27.11 16 21 Si 0.88 20.89 27.74 -169.99 -4.71 16.17 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 25 C 0.07 1.23 4.95 -2.42 -0.01 1.21 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 1.14 7.18 -51.93 -0.37 0.76 16 29 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.16 2.17 6.23 -52.49 -0.33 1.84 16 31 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.36 7.75 5.62 -40.82 -0.23 7.52 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.08 1.34 6.93 -51.93 -0.36 0.98 16 39 H 0.07 1.10 7.34 -51.93 -0.38 0.72 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -31.49 322.47 -6.25 -37.73 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.46 Total: 8.15 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.04 Total: -1.02 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.06 Total: -53.52 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.16 Total: -12.36 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.71 Total: 16.17 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.49 -6.25 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054369389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.518 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds