Wall clock time and date at job start Tue Mar 31 2020 00:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33653 * 125.79683 * 2 1 4 4 C 1.34222 * 110.90492 * 180.26085 * 3 2 1 5 5 C 1.34176 * 109.12301 * 0.02562 * 4 3 2 6 6 C 1.36415 * 125.80226 * 180.30882 * 2 1 3 7 7 C 1.47375 * 127.18947 * 359.71306 * 6 2 1 8 8 O 1.21615 * 120.00350 * 0.02562 * 7 6 2 9 9 N 1.34784 * 119.99977 * 180.02562 * 7 6 2 10 10 C 1.47419 * 125.65087 * 180.02562 * 9 7 6 11 11 C 1.54911 * 104.83208 * 204.08825 * 10 9 7 12 12 H 1.09000 * 110.99991 * 81.06645 * 11 10 9 13 13 C 1.52996 * 111.00269 * 204.87327 * 11 10 9 14 14 C 1.55148 * 101.58223 * 322.99217 * 11 10 9 15 15 H 1.09002 * 110.72362 * 154.03945 * 14 11 10 16 16 N 1.46499 * 110.72161 * 277.13674 * 14 11 10 17 17 C 1.36936 * 120.00372 * 205.00504 * 16 14 11 18 18 H 1.07995 * 119.99748 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00133 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99876 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99966 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47265 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47044 * 119.99937 * 21 19 17 24 24 H 1.48494 * 109.47184 * 239.99648 * 21 19 17 25 25 C 1.47018 * 125.64521 * 359.69298 * 9 7 6 26 26 H 1.09007 * 109.47117 * 269.68781 * 1 2 3 27 27 H 1.08999 * 109.47154 * 29.69279 * 1 2 3 28 28 H 1.09001 * 109.47293 * 149.69411 * 1 2 3 29 29 H 1.08000 * 125.43826 * 179.97438 * 4 3 2 30 30 H 1.07999 * 127.01954 * 180.02562 * 5 4 3 31 31 H 1.09004 * 110.36871 * 322.92851 * 10 9 7 32 32 H 1.09002 * 110.36709 * 85.14128 * 10 9 7 33 33 H 1.09005 * 109.46775 * 58.55422 * 13 11 10 34 34 H 1.09004 * 109.47134 * 178.54486 * 13 11 10 35 35 H 1.08992 * 109.47859 * 298.54716 * 13 11 10 36 36 H 0.97005 * 120.00066 * 25.00021 * 16 14 11 37 37 H 0.96999 * 119.99963 * 179.97438 * 20 19 17 38 38 H 1.09005 * 109.88144 * 298.39528 * 25 9 7 39 39 H 1.09000 * 109.88591 * 59.55476 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7391 -0.0057 5 6 3.6849 -0.5990 -0.0102 6 6 2.3051 -1.1064 -0.0060 7 6 1.8740 -2.5157 -0.0077 8 8 0.6890 -2.7891 -0.0040 9 7 2.7931 -3.5015 -0.0133 10 6 2.5028 -4.9468 -0.0162 11 6 3.7670 -5.6064 0.5891 12 1 3.7529 -5.5519 1.6777 13 6 3.9091 -7.0549 0.1173 14 6 4.8941 -4.7163 0.0022 15 1 5.7727 -4.7312 0.6472 16 7 5.2418 -5.1472 -1.3541 17 6 6.4868 -4.8822 -1.8588 18 1 7.2123 -4.3550 -1.2571 19 6 6.8164 -5.2910 -3.1437 20 7 5.9323 -5.9339 -3.8768 21 14 8.5146 -4.9287 -3.8324 22 1 9.3159 -4.2004 -2.8162 23 1 9.1925 -6.2049 -4.1748 24 1 8.3857 -4.0936 -5.0535 25 6 4.2511 -3.3135 -0.0246 26 1 -0.3634 -0.0056 1.0277 27 1 -0.3633 0.8927 -0.5090 28 1 -0.3634 -0.8872 -0.5186 29 1 4.4172 1.4285 -0.0073 30 1 4.5928 -1.1838 -0.0149 31 1 1.6307 -5.1599 0.6022 32 1 2.3398 -5.2990 -1.0348 33 1 3.9640 -7.0787 -0.9711 34 1 4.8183 -7.4860 0.5364 35 1 3.0465 -7.6319 0.4504 36 1 4.5900 -5.6205 -1.8947 37 1 6.1625 -6.2193 -4.7748 38 1 4.5496 -2.7838 -0.9293 39 1 4.5591 -2.7498 0.8560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054369392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:00 Heat of formation + Delta-G solvation = -0.896940 kcal Electronic energy + Delta-G solvation = -22065.065127 eV Core-core repulsion = 18781.981980 eV Total energy + Delta-G solvation = -3283.083147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49656 -39.60505 -37.50835 -34.00211 -33.13531 -32.27634 -31.64229 -30.48142 -27.87055 -27.18840 -25.91682 -23.99938 -23.07509 -21.54044 -21.04066 -19.29303 -18.66614 -17.63484 -16.98791 -16.31289 -15.94129 -15.68576 -15.08675 -14.62205 -14.24831 -13.84019 -13.69217 -13.28651 -13.08852 -12.99509 -12.93531 -12.64071 -12.52012 -11.99334 -11.84280 -11.71416 -11.52434 -11.11884 -10.95679 -10.73145 -10.42235 -10.24496 -9.96147 -9.74521 -9.69094 -9.61798 -9.02956 -8.59556 -8.15074 -7.08466 -5.86183 -3.16199 1.46358 2.16395 2.85014 3.37454 3.38358 3.43093 3.45755 3.60446 4.50641 4.57549 4.75375 4.95188 5.12603 5.18339 5.27276 5.36327 5.47697 5.51600 5.59328 5.63844 5.68977 5.78755 5.86201 5.95107 5.98203 6.16500 6.18064 6.26005 6.33607 6.37041 6.38768 6.53163 6.67309 6.74690 6.95990 7.08751 7.61655 7.91406 8.31517 8.48837 9.43566 9.98369 10.33145 11.36021 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.005353 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.854040 B = 5229.577366 C = 6277.064382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 O -0.180 6.180 4 C -0.049 4.049 5 C -0.188 4.188 6 C -0.234 4.234 7 C 0.600 3.400 8 O -0.558 6.558 9 N -0.598 5.598 10 C 0.116 3.884 11 C -0.115 4.115 12 H 0.077 0.923 13 C -0.132 4.132 14 C 0.170 3.830 15 H 0.074 0.926 16 N -0.711 5.711 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.069 3.931 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.207 0.793 30 H 0.169 0.831 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.167 9.045 10.154 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.014 3.986 3 O -0.076 6.076 4 C -0.114 4.114 5 C -0.207 4.207 6 C -0.238 4.238 7 C 0.391 3.609 8 O -0.440 6.440 9 N -0.329 5.329 10 C -0.006 4.006 11 C -0.135 4.135 12 H 0.096 0.904 13 C -0.190 4.190 14 C 0.057 3.943 15 H 0.091 0.909 16 N -0.352 5.352 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.057 4.057 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.223 0.777 30 H 0.186 0.814 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.726 9.270 10.089 15.264 hybrid contribution 1.149 0.025 -0.730 1.361 sum -5.578 9.295 9.359 14.321 Atomic orbital electron populations 1.20559 0.83936 1.04861 1.04106 1.22738 0.93999 0.83178 0.98676 1.83728 1.17273 1.34977 1.71637 1.23875 0.83341 0.96532 1.07695 1.23524 0.97565 0.94501 1.05126 1.21129 0.93400 0.93756 1.15501 1.16819 0.84508 0.83262 0.76333 1.90705 1.16315 1.83986 1.52973 1.48158 1.07275 1.06132 1.71386 1.22260 0.97842 0.79297 1.01200 1.22642 0.95145 0.96304 0.99456 0.90417 1.21559 1.00592 0.93584 1.03220 1.21255 0.94509 0.89438 0.89075 0.90861 1.42463 1.14461 1.67564 1.10718 1.19276 0.90251 1.31067 0.97158 0.90936 1.24748 0.97984 1.00767 0.96969 1.69665 1.33946 1.43649 1.10353 0.86139 0.83835 0.77452 0.78841 1.20497 1.21827 1.21876 1.23564 0.79060 1.02200 1.00859 0.89641 0.90671 0.87372 0.77682 0.81352 0.91203 0.91208 0.90810 0.92345 0.93705 0.77749 0.93405 0.90159 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.88 36.01 0.36 -0.55 16 2 C 0.07 0.96 7.37 -34.96 -0.26 0.70 16 3 O -0.18 -2.38 10.52 7.63 0.08 -2.30 16 4 C -0.05 -0.58 12.03 29.30 0.35 -0.23 16 5 C -0.19 -2.66 9.42 -37.46 -0.35 -3.02 16 6 C -0.23 -3.79 6.24 -103.28 -0.64 -4.44 16 7 C 0.60 11.03 7.84 -12.54 -0.10 10.93 16 8 O -0.56 -11.12 15.11 5.26 0.08 -11.04 16 9 N -0.60 -10.60 3.33 -171.80 -0.57 -11.17 16 10 C 0.12 1.97 6.33 -2.53 -0.02 1.95 16 11 C -0.12 -1.82 3.51 -88.48 -0.31 -2.13 16 12 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.13 -2.08 8.98 37.16 0.33 -1.75 16 14 C 0.17 3.09 3.40 -66.10 -0.22 2.86 16 15 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 16 N -0.71 -16.34 4.45 -51.65 -0.23 -16.57 16 17 C -0.25 -6.35 9.96 -15.06 -0.15 -6.50 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 21 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.07 1.18 4.73 -3.06 -0.01 1.16 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 1.43 6.50 -51.93 -0.34 1.09 16 29 H 0.21 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.17 2.29 4.87 -52.49 -0.26 2.03 16 31 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 32 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 33 H 0.07 1.38 6.28 -51.93 -0.33 1.05 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.39 9.64 6.25 -40.82 -0.26 9.38 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.08 1.54 6.94 -51.93 -0.36 1.18 16 39 H 0.06 0.85 6.83 -51.93 -0.35 0.50 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -30.93 319.29 -6.48 -37.41 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.23 Total: 9.97 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.12 Total: -1.31 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.08 Total: -53.98 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.16 Total: -13.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.93 -6.48 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054369392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.511 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds