Wall clock time and date at job start Tue Mar 31 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33653 * 125.79683 * 2 1 4 4 C 1.34222 * 110.90492 * 180.26085 * 3 2 1 5 5 C 1.34176 * 109.12301 * 0.02562 * 4 3 2 6 6 C 1.36415 * 125.80226 * 180.30882 * 2 1 3 7 7 C 1.47375 * 127.18947 * 359.71306 * 6 2 1 8 8 O 1.21615 * 120.00350 * 0.02562 * 7 6 2 9 9 N 1.34784 * 119.99977 * 180.02562 * 7 6 2 10 10 C 1.47419 * 125.65087 * 180.02562 * 9 7 6 11 11 C 1.54911 * 104.83208 * 204.08825 * 10 9 7 12 12 H 1.09000 * 110.99991 * 81.06645 * 11 10 9 13 13 C 1.52996 * 111.00269 * 204.87327 * 11 10 9 14 14 C 1.55148 * 101.58223 * 322.99217 * 11 10 9 15 15 H 1.09002 * 110.72362 * 154.03945 * 14 11 10 16 16 N 1.46499 * 110.72161 * 277.13674 * 14 11 10 17 17 C 1.36936 * 120.00372 * 205.00504 * 16 14 11 18 18 H 1.07995 * 119.99748 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00133 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99876 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99966 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47265 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47044 * 119.99937 * 21 19 17 24 24 H 1.48494 * 109.47184 * 239.99648 * 21 19 17 25 25 C 1.47018 * 125.64521 * 359.69298 * 9 7 6 26 26 H 1.09007 * 109.47117 * 269.68781 * 1 2 3 27 27 H 1.08999 * 109.47154 * 29.69279 * 1 2 3 28 28 H 1.09001 * 109.47293 * 149.69411 * 1 2 3 29 29 H 1.08000 * 125.43826 * 179.97438 * 4 3 2 30 30 H 1.07999 * 127.01954 * 180.02562 * 5 4 3 31 31 H 1.09004 * 110.36871 * 322.92851 * 10 9 7 32 32 H 1.09002 * 110.36709 * 85.14128 * 10 9 7 33 33 H 1.09005 * 109.46775 * 58.55422 * 13 11 10 34 34 H 1.09004 * 109.47134 * 178.54486 * 13 11 10 35 35 H 1.08992 * 109.47859 * 298.54716 * 13 11 10 36 36 H 0.97005 * 120.00066 * 25.00021 * 16 14 11 37 37 H 0.96999 * 119.99963 * 179.97438 * 20 19 17 38 38 H 1.09005 * 109.88144 * 298.39528 * 25 9 7 39 39 H 1.09000 * 109.88591 * 59.55476 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7391 -0.0057 5 6 3.6849 -0.5990 -0.0102 6 6 2.3051 -1.1064 -0.0060 7 6 1.8740 -2.5157 -0.0077 8 8 0.6890 -2.7891 -0.0040 9 7 2.7931 -3.5015 -0.0133 10 6 2.5028 -4.9468 -0.0162 11 6 3.7670 -5.6064 0.5891 12 1 3.7529 -5.5519 1.6777 13 6 3.9091 -7.0549 0.1173 14 6 4.8941 -4.7163 0.0022 15 1 5.7727 -4.7312 0.6472 16 7 5.2418 -5.1472 -1.3541 17 6 6.4868 -4.8822 -1.8588 18 1 7.2123 -4.3550 -1.2571 19 6 6.8164 -5.2910 -3.1437 20 7 5.9323 -5.9339 -3.8768 21 14 8.5146 -4.9287 -3.8324 22 1 9.3159 -4.2004 -2.8162 23 1 9.1925 -6.2049 -4.1748 24 1 8.3857 -4.0936 -5.0535 25 6 4.2511 -3.3135 -0.0246 26 1 -0.3634 -0.0056 1.0277 27 1 -0.3633 0.8927 -0.5090 28 1 -0.3634 -0.8872 -0.5186 29 1 4.4172 1.4285 -0.0073 30 1 4.5928 -1.1838 -0.0149 31 1 1.6307 -5.1599 0.6022 32 1 2.3398 -5.2990 -1.0348 33 1 3.9640 -7.0787 -0.9711 34 1 4.8183 -7.4860 0.5364 35 1 3.0465 -7.6319 0.4504 36 1 4.5900 -5.6205 -1.8947 37 1 6.1625 -6.2193 -4.7748 38 1 4.5496 -2.7838 -0.9293 39 1 4.5591 -2.7498 0.8560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054369392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:58 Heat of formation + Delta-G solvation = -20.515689 kcal Electronic energy + Delta-G solvation = -22065.915859 eV Core-core repulsion = 18781.981980 eV Total energy + Delta-G solvation = -3283.933880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.54949 -41.00472 -38.96135 -35.73286 -34.42630 -33.58728 -32.75398 -32.16728 -29.43667 -28.37604 -27.10903 -25.81785 -24.44589 -22.85697 -22.17961 -20.72656 -19.83089 -19.42603 -18.31789 -17.43107 -17.25790 -17.06826 -16.38851 -16.34151 -15.77566 -15.36924 -15.04067 -14.63820 -14.46701 -14.12149 -14.07000 -13.85535 -13.78499 -13.38857 -13.20987 -13.00680 -12.86700 -12.81210 -12.68306 -12.31038 -12.05578 -11.91069 -11.46048 -11.41122 -11.10169 -10.91372 -10.82397 -9.79401 -9.42901 -9.00107 -7.91466 -5.19750 0.30970 1.12195 1.50131 1.50959 1.60145 1.80900 2.09394 2.28176 2.58467 3.40591 3.43700 3.63230 3.83136 3.88872 3.92593 3.93508 4.08369 4.32720 4.41530 4.54179 4.61339 4.62647 4.65211 4.70622 4.74595 4.86233 4.87028 4.97442 5.00662 5.20316 5.21298 5.26442 5.33107 5.38584 5.55981 5.61550 6.03578 6.29727 6.52506 7.09250 7.37279 8.11028 8.34135 9.32243 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.005353 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.854040 B = 5229.577366 C = 6277.064382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.069 3.931 3 O -0.177 6.177 4 C -0.028 4.028 5 C -0.212 4.212 6 C -0.270 4.270 7 C 0.592 3.408 8 O -0.583 6.583 9 N -0.603 5.603 10 C 0.115 3.885 11 C -0.100 4.100 12 H 0.109 0.891 13 C -0.126 4.126 14 C 0.160 3.840 15 H 0.088 0.912 16 N -0.722 5.722 17 C -0.233 4.233 18 H 0.085 0.915 19 C -0.074 4.074 20 N -0.971 5.971 21 Si 0.967 3.033 22 H -0.260 1.260 23 H -0.298 1.298 24 H -0.301 1.301 25 C 0.083 3.917 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.251 0.749 30 H 0.170 0.830 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.374 0.626 37 H 0.248 0.752 38 H 0.057 0.943 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 10.845 12.097 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.016 3.984 3 O -0.073 6.073 4 C -0.093 4.093 5 C -0.231 4.231 6 C -0.274 4.274 7 C 0.384 3.616 8 O -0.467 6.467 9 N -0.334 5.334 10 C -0.007 4.007 11 C -0.120 4.120 12 H 0.127 0.873 13 C -0.183 4.183 14 C 0.050 3.950 15 H 0.105 0.895 16 N -0.361 5.361 17 C -0.365 4.365 18 H 0.103 0.897 19 C -0.266 4.266 20 N -0.622 5.622 21 Si 0.797 3.203 22 H -0.184 1.184 23 H -0.226 1.226 24 H -0.229 1.229 25 C -0.043 4.043 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.266 0.734 30 H 0.188 0.812 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.207 0.793 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.973 11.099 12.094 17.468 hybrid contribution 0.862 -0.473 -1.256 1.595 sum -5.111 10.627 10.838 16.016 Atomic orbital electron populations 1.20615 0.82431 1.05134 1.05136 1.23135 0.95039 0.82951 0.97289 1.83771 1.17867 1.34434 1.71246 1.24665 0.83569 0.96472 1.04593 1.23588 0.96724 0.95657 1.07129 1.21197 0.95157 0.93041 1.18015 1.17236 0.84278 0.84293 0.75785 1.90676 1.17215 1.84581 1.54205 1.48255 1.07502 1.06315 1.71295 1.22257 0.98977 0.79301 1.00157 1.22603 0.93023 0.95468 1.00866 0.87296 1.21480 1.01852 0.94133 1.00877 1.21533 0.95988 0.90456 0.87019 0.89459 1.42622 1.13449 1.67613 1.12453 1.19711 0.91160 1.28726 0.96888 0.89705 1.25485 1.01225 1.02006 0.97855 1.69828 1.35856 1.46114 1.10378 0.85157 0.80329 0.76742 0.78036 1.18446 1.22602 1.22892 1.23341 0.78659 1.01195 1.01062 0.88105 0.88008 0.89411 0.73351 0.81236 0.90262 0.93647 0.94272 0.92108 0.91237 0.79253 0.94310 0.92474 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.88 71.24 0.70 -0.97 16 2 C 0.07 1.88 7.37 25.26 0.19 2.07 16 3 O -0.18 -4.22 10.52 4.40 0.05 -4.17 16 4 C -0.03 -0.58 12.03 66.89 0.80 0.22 16 5 C -0.21 -5.63 9.42 23.65 0.22 -5.41 16 6 C -0.27 -8.56 6.24 -18.99 -0.12 -8.68 16 7 C 0.59 21.79 7.84 86.65 0.68 22.47 16 8 O -0.58 -23.55 15.11 -4.08 -0.06 -23.61 16 9 N -0.60 -21.19 3.33 -815.69 -2.71 -23.90 16 10 C 0.12 3.89 6.33 86.86 0.55 4.44 16 11 C -0.10 -2.99 3.51 -9.41 -0.03 -3.02 16 12 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.13 -3.86 8.98 71.98 0.65 -3.21 16 14 C 0.16 5.63 3.40 46.18 0.16 5.79 16 15 H 0.09 2.86 8.09 -2.39 -0.02 2.84 16 16 N -0.72 -33.33 4.45 -317.33 -1.41 -34.74 16 17 C -0.23 -11.92 9.96 84.03 0.84 -11.08 16 18 H 0.09 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 20 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 21 Si 0.97 44.43 29.55 68.60 2.03 46.45 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 C 0.08 2.73 4.73 86.73 0.41 3.15 16 26 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 2.31 6.50 -2.39 -0.02 2.30 16 29 H 0.25 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.17 4.34 4.87 -2.91 -0.01 4.32 16 31 H 0.08 2.51 8.04 -2.38 -0.02 2.49 16 32 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 33 H 0.04 1.48 6.28 -2.38 -0.01 1.47 16 34 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.37 19.23 6.25 -92.70 -0.58 18.65 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.06 2.18 6.94 -2.38 -0.02 2.16 16 39 H 0.09 2.37 6.83 -2.39 -0.02 2.35 16 Total: -1.00 -68.26 319.29 4.18 -64.08 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.49 Total: 31.49 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.51 Total: 2.19 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -3.84 Total: -116.43 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.02 Total: -27.78 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.26 4.18 -64.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054369392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.565 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds