Wall clock time and date at job start Tue Mar 31 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40364 * 126.64325 * 2 1 4 4 C 1.35129 * 107.11528 * 180.02562 * 3 2 1 5 5 O 1.33929 * 108.76545 * 359.75091 * 4 3 2 6 6 C 1.34908 * 109.38515 * 0.41227 * 5 4 3 7 7 C 1.46663 * 125.99100 * 179.86337 * 6 5 4 8 8 O 1.21694 * 120.00273 * 179.68456 * 7 6 5 9 9 N 1.34783 * 119.99398 * 359.68100 * 7 6 5 10 10 C 1.47428 * 125.64363 * 180.02562 * 9 7 6 11 11 C 1.54905 * 104.83005 * 204.09303 * 10 9 7 12 12 H 1.09004 * 111.00717 * 81.06589 * 11 10 9 13 13 C 1.52998 * 111.00757 * 204.91596 * 11 10 9 14 14 C 1.55162 * 101.58494 * 322.99378 * 11 10 9 15 15 H 1.08995 * 110.86872 * 277.06330 * 14 11 10 16 16 N 1.46499 * 110.72136 * 153.86398 * 14 11 10 17 17 C 1.36931 * 120.00122 * 160.02424 * 16 14 11 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47017 * 125.65073 * 359.97438 * 9 7 6 26 26 H 1.08999 * 109.46995 * 269.97349 * 1 2 3 27 27 H 1.08996 * 109.46956 * 29.97475 * 1 2 3 28 28 H 1.08999 * 109.46854 * 149.97309 * 1 2 3 29 29 H 1.08006 * 126.44484 * 0.02562 * 3 2 1 30 30 H 1.07998 * 125.61413 * 180.02562 * 4 3 2 31 31 H 1.09001 * 110.36863 * 322.93452 * 10 9 7 32 32 H 1.09000 * 110.36244 * 85.14936 * 10 9 7 33 33 H 1.09000 * 109.47369 * 172.19661 * 13 11 10 34 34 H 1.08999 * 109.47009 * 292.20242 * 13 11 10 35 35 H 1.09002 * 109.46507 * 52.19707 * 13 11 10 36 36 H 0.97001 * 119.99790 * 340.01941 * 16 14 11 37 37 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.88283 * 59.55899 * 25 9 7 39 39 H 1.09004 * 110.01221 * 298.46326 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0006 5 8 3.6006 -0.6646 0.0046 6 6 2.3221 -1.0954 -0.0006 7 6 1.8843 -2.4952 -0.0003 8 8 0.6969 -2.7614 0.0005 9 7 2.7973 -3.4867 -0.0009 10 6 2.4979 -4.9303 -0.0012 11 6 3.7561 -5.5963 0.6094 12 1 3.7392 -5.5392 1.6978 13 6 3.8912 -7.0465 0.1407 14 6 4.8907 -4.7146 0.0238 15 1 5.1532 -5.0380 -0.9834 16 7 6.0672 -4.7367 0.8965 17 6 7.2939 -4.3835 0.4010 18 1 7.3940 -4.0881 -0.6330 19 6 8.4088 -4.4050 1.2277 20 7 8.2867 -4.7645 2.4880 21 14 10.0808 -3.9157 0.5538 22 1 11.0976 -4.0164 1.6313 23 1 10.4500 -4.8239 -0.5616 24 1 10.0241 -2.5178 0.0558 25 6 4.2566 -3.3079 -0.0025 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 2.0306 2.1596 0.0004 30 1 4.5046 1.2918 -0.0003 31 1 1.6227 -5.1364 0.6149 32 1 2.3359 -5.2838 -1.0195 33 1 4.8502 -7.4468 0.4697 34 1 3.0836 -7.6424 0.5657 35 1 3.8361 -7.0832 -0.9473 36 1 5.9772 -5.0016 1.8253 37 1 9.0657 -4.7792 3.0658 38 1 4.5622 -2.7470 0.8808 39 1 4.5665 -2.7782 -0.9034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054384659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:36 Heat of formation + Delta-G solvation = -8.771382 kcal Electronic energy + Delta-G solvation = -21939.528277 eV Core-core repulsion = 18656.103669 eV Total energy + Delta-G solvation = -3283.424608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.62499 -39.62969 -37.60049 -34.33259 -33.85090 -32.54021 -30.78072 -30.30869 -27.97161 -27.42991 -26.02757 -24.05457 -22.67695 -21.42768 -20.85365 -19.95864 -19.16788 -17.37847 -17.14155 -16.42484 -16.13566 -15.77540 -15.21952 -14.55860 -14.15389 -13.63534 -13.54747 -13.23017 -13.17733 -13.06574 -12.90499 -12.66217 -12.51661 -12.40767 -12.06773 -11.77726 -11.53468 -11.15508 -11.01242 -10.74848 -10.62866 -10.29974 -10.04190 -9.93324 -9.73568 -9.67597 -9.01309 -8.68690 -8.26647 -7.10817 -5.85992 -3.16811 1.16180 2.36378 2.78970 3.30623 3.31051 3.38652 3.43807 3.44396 4.49689 4.62120 4.78769 4.82885 5.02794 5.13911 5.20134 5.45089 5.54619 5.54952 5.60405 5.70154 5.71748 5.77797 5.82529 5.90541 5.97644 6.04168 6.12987 6.19723 6.25697 6.39232 6.41200 6.51151 6.53161 6.59796 6.87612 6.99210 7.61224 7.69125 8.21346 8.31465 9.43310 9.96848 10.32086 11.35908 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.005393 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.395482 B = 5191.149865 C = 6586.025059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.097 4.097 3 C -0.231 4.231 4 C -0.004 4.004 5 O -0.149 6.149 6 C -0.075 4.075 7 C 0.611 3.389 8 O -0.535 6.535 9 N -0.603 5.603 10 C 0.115 3.885 11 C -0.114 4.114 12 H 0.085 0.915 13 C -0.133 4.133 14 C 0.177 3.823 15 H 0.067 0.933 16 N -0.710 5.710 17 C -0.248 4.248 18 H 0.072 0.928 19 C -0.007 4.007 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.075 3.925 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.208 0.792 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.077 0.923 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.030 6.593 -5.271 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.250 4.250 4 C -0.075 4.075 5 O -0.043 6.043 6 C -0.127 4.127 7 C 0.400 3.600 8 O -0.416 6.416 9 N -0.335 5.335 10 C -0.007 4.007 11 C -0.134 4.134 12 H 0.103 0.897 13 C -0.191 4.191 14 C 0.065 3.935 15 H 0.085 0.915 16 N -0.350 5.350 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.051 4.051 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.171 0.829 30 H 0.225 0.775 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.246 6.311 -5.341 14.776 hybrid contribution 1.096 0.711 0.040 1.307 sum -11.150 7.022 -5.301 14.203 Atomic orbital electron populations 1.20377 0.88444 1.03267 1.02668 1.20576 0.97479 0.90999 1.00946 1.21679 0.92450 0.99913 1.10921 1.24419 0.99880 0.81114 1.02070 1.84276 1.28065 1.22224 1.69774 1.21829 0.81619 0.94651 1.14576 1.16210 0.84813 0.81532 0.77407 1.90798 1.15396 1.82408 1.52954 1.48428 1.08066 1.06301 1.70662 1.22322 0.98506 0.78974 1.00946 1.22634 0.94178 0.95585 1.00959 0.89706 1.21609 1.02279 0.94444 1.00748 1.21264 0.86950 0.89896 0.95410 0.91523 1.42343 1.02297 1.79988 1.10414 1.19191 0.84992 1.38370 0.95330 0.91044 1.24752 0.98043 1.01843 0.95740 1.69654 1.29601 1.53648 1.04802 0.86271 0.83877 0.78379 0.77647 1.21656 1.21147 1.21185 1.23424 0.76854 1.02581 1.02205 0.91059 0.91772 0.89622 0.82935 0.77536 0.90635 0.91283 0.91253 0.93096 0.92795 0.77846 0.93299 0.90445 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.82 36.01 0.35 -0.76 16 2 C -0.10 -1.38 6.20 -104.43 -0.65 -2.02 16 3 C -0.23 -2.72 10.83 -39.89 -0.43 -3.15 16 4 C 0.00 -0.05 12.08 29.63 0.36 0.31 16 5 O -0.15 -2.36 8.28 5.02 0.04 -2.32 16 6 C -0.07 -1.22 6.95 -36.80 -0.26 -1.48 16 7 C 0.61 10.82 7.82 -12.86 -0.10 10.72 16 8 O -0.54 -10.06 14.99 5.19 0.08 -9.98 16 9 N -0.60 -10.31 3.33 -172.06 -0.57 -10.88 16 10 C 0.11 1.73 6.37 -2.53 -0.02 1.72 16 11 C -0.11 -1.80 3.25 -88.47 -0.29 -2.08 16 12 H 0.08 1.42 8.00 -51.93 -0.42 1.01 16 13 C -0.13 -1.84 9.31 37.16 0.35 -1.50 16 14 C 0.18 3.34 3.06 -66.09 -0.20 3.13 16 15 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 16 N -0.71 -16.73 5.18 -51.65 -0.27 -17.00 16 17 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 21 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.07 1.37 5.30 -3.07 -0.02 1.35 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.17 6.45 -51.93 -0.33 0.84 16 29 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.21 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 32 H 0.07 0.95 7.99 -51.93 -0.41 0.54 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.39 9.78 7.71 -40.82 -0.31 9.46 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 1.58 7.56 -51.93 -0.39 1.19 16 39 H 0.06 1.12 7.80 -51.93 -0.40 0.71 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -30.49 326.62 -6.86 -37.35 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.61 Total: 8.38 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.15 Total: -0.71 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.12 Total: -54.17 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.12 Total: -12.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.49 -6.86 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.577 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds