Wall clock time and date at job start Tue Mar 31 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40364 * 126.64325 * 2 1 4 4 C 1.35129 * 107.11528 * 180.02562 * 3 2 1 5 5 O 1.33929 * 108.76545 * 359.75091 * 4 3 2 6 6 C 1.34908 * 109.38515 * 0.41227 * 5 4 3 7 7 C 1.46663 * 125.99100 * 179.86337 * 6 5 4 8 8 O 1.21694 * 120.00273 * 179.68456 * 7 6 5 9 9 N 1.34783 * 119.99398 * 359.68100 * 7 6 5 10 10 C 1.47428 * 125.64363 * 180.02562 * 9 7 6 11 11 C 1.54905 * 104.83005 * 204.09303 * 10 9 7 12 12 H 1.09004 * 111.00717 * 81.06589 * 11 10 9 13 13 C 1.52998 * 111.00757 * 204.91596 * 11 10 9 14 14 C 1.55162 * 101.58494 * 322.99378 * 11 10 9 15 15 H 1.08995 * 110.86872 * 277.06330 * 14 11 10 16 16 N 1.46499 * 110.72136 * 153.86398 * 14 11 10 17 17 C 1.36931 * 120.00122 * 160.02424 * 16 14 11 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47017 * 125.65073 * 359.97438 * 9 7 6 26 26 H 1.08999 * 109.46995 * 269.97349 * 1 2 3 27 27 H 1.08996 * 109.46956 * 29.97475 * 1 2 3 28 28 H 1.08999 * 109.46854 * 149.97309 * 1 2 3 29 29 H 1.08006 * 126.44484 * 0.02562 * 3 2 1 30 30 H 1.07998 * 125.61413 * 180.02562 * 4 3 2 31 31 H 1.09001 * 110.36863 * 322.93452 * 10 9 7 32 32 H 1.09000 * 110.36244 * 85.14936 * 10 9 7 33 33 H 1.09000 * 109.47369 * 172.19661 * 13 11 10 34 34 H 1.08999 * 109.47009 * 292.20242 * 13 11 10 35 35 H 1.09002 * 109.46507 * 52.19707 * 13 11 10 36 36 H 0.97001 * 119.99790 * 340.01941 * 16 14 11 37 37 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.88283 * 59.55899 * 25 9 7 39 39 H 1.09004 * 110.01221 * 298.46326 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0006 5 8 3.6006 -0.6646 0.0046 6 6 2.3221 -1.0954 -0.0006 7 6 1.8843 -2.4952 -0.0003 8 8 0.6969 -2.7614 0.0005 9 7 2.7973 -3.4867 -0.0009 10 6 2.4979 -4.9303 -0.0012 11 6 3.7561 -5.5963 0.6094 12 1 3.7392 -5.5392 1.6978 13 6 3.8912 -7.0465 0.1407 14 6 4.8907 -4.7146 0.0238 15 1 5.1532 -5.0380 -0.9834 16 7 6.0672 -4.7367 0.8965 17 6 7.2939 -4.3835 0.4010 18 1 7.3940 -4.0881 -0.6330 19 6 8.4088 -4.4050 1.2277 20 7 8.2867 -4.7645 2.4880 21 14 10.0808 -3.9157 0.5538 22 1 11.0976 -4.0164 1.6313 23 1 10.4500 -4.8239 -0.5616 24 1 10.0241 -2.5178 0.0558 25 6 4.2566 -3.3079 -0.0025 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 2.0306 2.1596 0.0004 30 1 4.5046 1.2918 -0.0003 31 1 1.6227 -5.1364 0.6149 32 1 2.3359 -5.2838 -1.0195 33 1 4.8502 -7.4468 0.4697 34 1 3.0836 -7.6424 0.5657 35 1 3.8361 -7.0832 -0.9473 36 1 5.9772 -5.0016 1.8253 37 1 9.0657 -4.7792 3.0658 38 1 4.5622 -2.7470 0.8808 39 1 4.5665 -2.7782 -0.9034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054384659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:35 Heat of formation + Delta-G solvation = -27.942083 kcal Electronic energy + Delta-G solvation = -21940.359581 eV Core-core repulsion = 18656.103669 eV Total energy + Delta-G solvation = -3284.255912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.69368 -40.99336 -39.01773 -35.95404 -35.08877 -33.97927 -32.55120 -31.35675 -29.29205 -28.84774 -27.18625 -25.90793 -23.94517 -22.67073 -22.07167 -21.38285 -20.36919 -19.08586 -18.62902 -17.65594 -17.36821 -17.09131 -16.60825 -16.14582 -15.58433 -15.36232 -14.81914 -14.66616 -14.51610 -14.13845 -14.03296 -13.88958 -13.75229 -13.58643 -13.36372 -13.00772 -12.87403 -12.82155 -12.75749 -12.25178 -12.17709 -12.04561 -11.69855 -11.46141 -11.24293 -10.93312 -10.67419 -9.92641 -9.49433 -9.07351 -7.93862 -5.24172 0.01149 1.39065 1.50300 1.52033 1.58195 1.65009 2.03535 2.11030 2.57428 3.34097 3.39329 3.73777 3.78791 3.80759 3.87124 3.93020 4.20621 4.31481 4.42880 4.52657 4.60820 4.61066 4.62978 4.74776 4.76625 4.86473 4.90561 5.07631 5.09568 5.12154 5.17049 5.20417 5.31870 5.46196 5.50528 5.54598 5.93687 6.25674 6.32477 6.89039 7.34049 8.04478 8.29480 9.28880 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.005393 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.395482 B = 5191.149865 C = 6586.025059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.093 4.093 3 C -0.228 4.228 4 C 0.000 4.000 5 O -0.174 6.174 6 C -0.121 4.121 7 C 0.607 3.393 8 O -0.554 6.554 9 N -0.607 5.607 10 C 0.117 3.883 11 C -0.103 4.103 12 H 0.071 0.929 13 C -0.127 4.127 14 C 0.172 3.828 15 H 0.072 0.928 16 N -0.721 5.721 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.068 4.068 20 N -0.968 5.968 21 Si 0.970 3.030 22 H -0.298 1.298 23 H -0.277 1.277 24 H -0.278 1.278 25 C 0.095 3.905 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.188 0.812 30 H 0.245 0.755 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.051 0.949 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 7.897 -6.570 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.247 4.247 4 C -0.069 4.069 5 O -0.070 6.070 6 C -0.172 4.172 7 C 0.397 3.603 8 O -0.436 6.436 9 N -0.339 5.339 10 C -0.005 4.005 11 C -0.123 4.123 12 H 0.090 0.910 13 C -0.184 4.184 14 C 0.061 3.939 15 H 0.090 0.910 16 N -0.359 5.359 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.260 4.260 20 N -0.618 5.618 21 Si 0.799 3.201 22 H -0.225 1.225 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.031 4.031 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.261 0.739 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.208 0.792 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.896 7.615 -6.686 16.402 hybrid contribution 1.196 0.405 0.417 1.330 sum -11.701 8.020 -6.269 15.509 Atomic orbital electron populations 1.20422 0.87301 1.03785 1.03124 1.21041 0.98493 0.91241 0.98851 1.22078 0.91702 1.00850 1.10066 1.25323 1.01715 0.80008 0.99863 1.84242 1.28011 1.24154 1.70588 1.21767 0.82498 0.94594 1.18382 1.16461 0.84636 0.82285 0.76887 1.90770 1.15851 1.82981 1.53978 1.48451 1.07341 1.07173 1.70892 1.22421 0.98065 0.77874 1.02097 1.22541 0.93126 0.96514 1.00107 0.91031 1.21565 1.02072 0.92970 1.01804 1.21445 0.86465 0.90960 0.95010 0.91035 1.42452 1.03068 1.80029 1.10393 1.19570 0.85965 1.36457 0.95489 0.90341 1.25503 1.01445 1.02994 0.96078 1.69811 1.30003 1.55878 1.06061 0.85277 0.79695 0.78349 0.76823 1.22479 1.20318 1.20385 1.22968 0.77770 1.01436 1.00899 0.90513 0.88823 0.91486 0.79453 0.73909 0.89997 0.89367 0.93310 0.90658 0.91282 0.79214 0.94021 0.93027 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.05 9.82 71.24 0.70 -1.35 16 2 C -0.09 -2.51 6.20 -19.74 -0.12 -2.63 16 3 C -0.23 -4.74 10.83 22.07 0.24 -4.50 16 4 C 0.00 0.01 12.08 67.10 0.81 0.82 16 5 O -0.17 -5.45 8.28 -4.96 -0.04 -5.50 16 6 C -0.12 -3.96 6.95 24.07 0.17 -3.79 16 7 C 0.61 21.62 7.82 86.44 0.68 22.29 16 8 O -0.55 -20.89 14.99 -4.33 -0.06 -20.95 16 9 N -0.61 -20.76 3.33 -816.50 -2.72 -23.48 16 10 C 0.12 3.41 6.37 86.85 0.55 3.97 16 11 C -0.10 -3.21 3.25 -9.40 -0.03 -3.24 16 12 H 0.07 2.43 8.00 -2.38 -0.02 2.41 16 13 C -0.13 -3.32 9.31 71.98 0.67 -2.65 16 14 C 0.17 6.47 3.06 46.18 0.14 6.61 16 15 H 0.07 2.64 8.02 -2.39 -0.02 2.63 16 16 N -0.72 -34.49 5.18 -317.33 -1.64 -36.14 16 17 C -0.24 -12.81 9.98 84.03 0.84 -11.97 16 18 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 20 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 21 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 C 0.10 3.51 5.30 86.73 0.46 3.97 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.80 6.45 -2.39 -0.02 1.78 16 29 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.24 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.08 2.31 8.04 -2.39 -0.02 2.29 16 32 H 0.09 2.25 7.99 -2.39 -0.02 2.24 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.38 19.56 7.71 -92.71 -0.72 18.84 16 37 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 38 H 0.05 2.17 7.56 -2.39 -0.02 2.15 16 39 H 0.06 2.23 7.80 -2.38 -0.02 2.21 16 Total: -1.00 -66.84 326.62 3.75 -63.09 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.34 Total: 29.37 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.57 Total: 4.27 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -4.08 Total: -116.76 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.11 Total: -26.45 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -66.84 3.75 -63.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.145 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds