Wall clock time and date at job start Tue Mar 31 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40367 * 126.64553 * 2 1 4 4 C 1.35127 * 107.11315 * 179.97438 * 3 2 1 5 5 O 1.33928 * 108.77212 * 0.02562 * 4 3 2 6 6 C 1.34918 * 109.38200 * 359.75090 * 5 4 3 7 7 C 1.46656 * 125.99052 * 180.27150 * 6 5 4 8 8 O 1.21689 * 120.00012 * 180.14978 * 7 6 5 9 9 N 1.34773 * 119.99830 * 0.15257 * 7 6 5 10 10 C 1.47020 * 125.64799 * 179.71734 * 9 7 6 11 11 C 1.54337 * 107.26503 * 178.85043 * 10 9 7 12 12 H 1.09004 * 110.51949 * 96.45252 * 11 10 9 13 13 C 1.53000 * 111.00187 * 219.59796 * 11 10 9 14 14 C 1.55159 * 103.02285 * 338.13903 * 11 10 9 15 15 H 1.08999 * 111.00264 * 153.38086 * 14 11 10 16 16 N 1.46496 * 111.00470 * 277.23624 * 14 11 10 17 17 C 1.36934 * 120.00362 * 198.65017 * 16 14 11 18 18 H 1.08007 * 119.99640 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00544 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47248 * 59.99987 * 21 19 17 23 23 H 1.48500 * 109.46889 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47171 * 299.99691 * 21 19 17 25 25 C 1.47429 * 125.64921 * 0.02709 * 9 7 6 26 26 H 1.09002 * 109.47152 * 90.02436 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02536 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02517 * 1 2 3 29 29 H 1.07996 * 126.44151 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.61182 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.88411 * 298.39107 * 10 9 7 32 32 H 1.08999 * 109.88521 * 59.55950 * 10 9 7 33 33 H 1.09005 * 109.47298 * 173.78003 * 13 11 10 34 34 H 1.08996 * 109.47502 * 293.78682 * 13 11 10 35 35 H 1.09002 * 109.46698 * 53.78262 * 13 11 10 36 36 H 0.97001 * 119.99978 * 18.64545 * 16 14 11 37 37 H 0.96997 * 120.00334 * 180.02562 * 20 19 17 38 38 H 1.09001 * 110.36143 * 322.92862 * 25 9 7 39 39 H 1.08996 * 110.36863 * 85.14433 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6006 -0.6647 0.0004 6 6 2.3220 -1.0955 0.0052 7 6 1.8842 -2.4952 0.0122 8 8 0.6968 -2.7613 0.0133 9 7 2.7971 -3.4867 0.0174 10 6 2.4985 -4.9262 0.0305 11 6 3.8482 -5.6743 0.0027 12 1 4.1501 -5.9554 1.0116 13 6 3.7735 -6.9067 -0.9010 14 6 4.8207 -4.6190 -0.5874 15 1 5.8422 -4.7987 -0.2523 16 7 4.7463 -4.5964 -2.0503 17 6 5.7613 -4.0360 -2.7789 18 1 6.6165 -3.6103 -2.2750 19 6 5.6912 -4.0151 -4.1651 20 7 4.6488 -4.5334 -4.7791 21 14 7.0755 -3.2500 -5.1589 22 1 8.3441 -3.9676 -4.8747 23 1 6.7613 -3.3534 -6.6065 24 1 7.2213 -1.8202 -4.7855 25 6 4.2604 -3.3075 0.0174 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 2.0306 2.1595 -0.0004 30 1 4.5046 1.2917 0.0003 31 1 1.9490 -5.1827 0.9364 32 1 1.9117 -5.1912 -0.8490 33 1 4.7643 -7.3521 -0.9905 34 1 3.0861 -7.6335 -0.4682 35 1 3.4169 -6.6123 -1.8880 36 1 3.9781 -4.9785 -2.5028 37 1 4.5999 -4.5192 -5.7478 38 1 4.5381 -2.4550 -0.6025 39 1 4.6259 -3.1706 1.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054384660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:42 Heat of formation + Delta-G solvation = -4.424371 kcal Electronic energy + Delta-G solvation = -22369.621438 eV Core-core repulsion = 19086.385331 eV Total energy + Delta-G solvation = -3283.236108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52058 -39.55020 -37.56700 -34.19278 -33.66771 -32.41045 -30.57202 -30.17270 -27.96414 -27.53534 -25.89643 -23.90273 -22.82608 -21.55221 -20.86764 -19.26832 -19.07434 -17.63662 -16.96790 -16.31814 -16.03505 -15.64382 -15.06409 -14.57081 -14.06938 -13.75688 -13.56028 -13.10755 -13.01575 -12.91758 -12.82794 -12.61325 -12.34471 -12.15253 -11.96949 -11.65649 -11.45728 -11.12815 -10.91838 -10.73390 -10.46521 -10.30471 -9.96446 -9.79473 -9.64400 -9.57135 -9.03054 -8.56284 -8.13902 -7.02488 -5.82009 -3.11712 1.29034 2.46950 2.89603 3.40039 3.43696 3.44686 3.46097 3.49367 4.53322 4.70538 4.89444 4.90967 5.11994 5.17241 5.31460 5.54043 5.55691 5.64041 5.65878 5.75261 5.83061 5.84000 5.91760 5.99433 6.13065 6.20970 6.21812 6.23997 6.36397 6.37756 6.51631 6.57557 6.60539 6.80140 6.91855 7.08732 7.64210 7.83261 8.35759 8.38224 9.47472 10.02768 10.37536 11.40120 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.006638 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.460472 B = 4217.437298 C = 5395.852346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.100 4.100 3 C -0.228 4.228 4 C -0.011 4.011 5 O -0.150 6.150 6 C -0.066 4.066 7 C 0.613 3.387 8 O -0.535 6.535 9 N -0.592 5.592 10 C 0.118 3.882 11 C -0.113 4.113 12 H 0.080 0.920 13 C -0.132 4.132 14 C 0.172 3.828 15 H 0.072 0.928 16 N -0.709 5.709 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.068 3.932 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.206 0.794 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.090 0.910 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 5.814 12.255 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.247 4.247 4 C -0.081 4.081 5 O -0.045 6.045 6 C -0.118 4.118 7 C 0.402 3.598 8 O -0.416 6.416 9 N -0.323 5.323 10 C -0.005 4.005 11 C -0.133 4.133 12 H 0.099 0.901 13 C -0.189 4.189 14 C 0.059 3.941 15 H 0.090 0.910 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.058 4.058 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.170 0.830 30 H 0.223 0.777 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.133 5.554 12.136 13.709 hybrid contribution 0.579 0.793 -0.845 1.295 sum -2.554 6.347 11.291 13.202 Atomic orbital electron populations 1.20374 0.88491 1.03113 1.02762 1.20560 0.97492 0.91009 1.01214 1.21650 0.92490 0.99839 1.10735 1.24354 0.99794 0.81281 1.02671 1.84264 1.28213 1.22079 1.69948 1.21828 0.81474 0.94648 1.13850 1.16155 0.84796 0.81456 0.77437 1.90793 1.15459 1.82356 1.52942 1.48191 1.07701 1.06026 1.70342 1.22002 0.97604 0.79289 1.01577 1.22507 0.94699 0.96231 0.99864 0.90149 1.21601 1.01807 0.95563 0.99973 1.21368 0.96298 0.89978 0.86444 0.91028 1.42371 1.24054 1.70175 0.98366 1.19164 0.98600 1.31208 0.88682 0.91094 1.24742 0.97847 1.01335 0.96552 1.69646 1.29477 1.50107 1.08411 0.86283 0.81572 0.79031 0.79358 1.21172 1.21710 1.21301 1.23569 0.78523 1.03781 0.99953 0.91005 0.91881 0.89644 0.83043 0.77703 0.91980 0.91129 0.92034 0.93615 0.91227 0.77726 0.93351 0.89204 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.82 36.01 0.35 -0.90 16 2 C -0.10 -1.56 6.20 -104.43 -0.65 -2.21 16 3 C -0.23 -2.94 10.83 -39.89 -0.43 -3.37 16 4 C -0.01 -0.14 12.08 29.63 0.36 0.22 16 5 O -0.15 -2.49 7.86 4.99 0.04 -2.45 16 6 C -0.07 -1.18 6.93 -36.80 -0.25 -1.44 16 7 C 0.61 12.01 7.82 -12.86 -0.10 11.91 16 8 O -0.54 -11.21 15.06 5.20 0.08 -11.14 16 9 N -0.59 -10.99 3.33 -172.06 -0.57 -11.56 16 10 C 0.12 1.98 6.47 -3.06 -0.02 1.96 16 11 C -0.11 -1.76 3.40 -88.78 -0.30 -2.06 16 12 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.13 -2.07 8.73 37.16 0.32 -1.74 16 14 C 0.17 3.20 3.44 -65.78 -0.23 2.98 16 15 H 0.07 1.29 8.13 -51.93 -0.42 0.86 16 16 N -0.71 -16.84 4.74 -51.35 -0.24 -17.08 16 17 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.07 1.21 5.86 -2.52 -0.01 1.19 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.30 6.43 -51.93 -0.33 0.97 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.21 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.29 7.78 -51.93 -0.40 0.89 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.29 6.37 -51.93 -0.33 0.96 16 36 H 0.39 9.97 6.09 -40.82 -0.25 9.73 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.09 1.82 6.22 -51.93 -0.32 1.50 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -31.68 322.24 -6.76 -38.44 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.41 Total: 9.33 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.21 Total: -0.45 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.09 Total: -55.52 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.12 Total: -13.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.68 -6.76 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.018 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds