Wall clock time and date at job start Tue Mar 31 2020 01:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40367 * 126.64553 * 2 1 4 4 C 1.35127 * 107.11315 * 179.97438 * 3 2 1 5 5 O 1.33928 * 108.77212 * 0.02562 * 4 3 2 6 6 C 1.34918 * 109.38200 * 359.75090 * 5 4 3 7 7 C 1.46656 * 125.99052 * 180.27150 * 6 5 4 8 8 O 1.21689 * 120.00012 * 180.14978 * 7 6 5 9 9 N 1.34773 * 119.99830 * 0.15257 * 7 6 5 10 10 C 1.47020 * 125.64799 * 179.71734 * 9 7 6 11 11 C 1.54337 * 107.26503 * 178.85043 * 10 9 7 12 12 H 1.09004 * 110.51949 * 96.45252 * 11 10 9 13 13 C 1.53000 * 111.00187 * 219.59796 * 11 10 9 14 14 C 1.55159 * 103.02285 * 338.13903 * 11 10 9 15 15 H 1.08999 * 111.00264 * 153.38086 * 14 11 10 16 16 N 1.46496 * 111.00470 * 277.23624 * 14 11 10 17 17 C 1.36934 * 120.00362 * 198.65017 * 16 14 11 18 18 H 1.08007 * 119.99640 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00544 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47248 * 59.99987 * 21 19 17 23 23 H 1.48500 * 109.46889 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47171 * 299.99691 * 21 19 17 25 25 C 1.47429 * 125.64921 * 0.02709 * 9 7 6 26 26 H 1.09002 * 109.47152 * 90.02436 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02536 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02517 * 1 2 3 29 29 H 1.07996 * 126.44151 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.61182 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.88411 * 298.39107 * 10 9 7 32 32 H 1.08999 * 109.88521 * 59.55950 * 10 9 7 33 33 H 1.09005 * 109.47298 * 173.78003 * 13 11 10 34 34 H 1.08996 * 109.47502 * 293.78682 * 13 11 10 35 35 H 1.09002 * 109.46698 * 53.78262 * 13 11 10 36 36 H 0.97001 * 119.99978 * 18.64545 * 16 14 11 37 37 H 0.96997 * 120.00334 * 180.02562 * 20 19 17 38 38 H 1.09001 * 110.36143 * 322.92862 * 25 9 7 39 39 H 1.08996 * 110.36863 * 85.14433 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6006 -0.6647 0.0004 6 6 2.3220 -1.0955 0.0052 7 6 1.8842 -2.4952 0.0122 8 8 0.6968 -2.7613 0.0133 9 7 2.7971 -3.4867 0.0174 10 6 2.4985 -4.9262 0.0305 11 6 3.8482 -5.6743 0.0027 12 1 4.1501 -5.9554 1.0116 13 6 3.7735 -6.9067 -0.9010 14 6 4.8207 -4.6190 -0.5874 15 1 5.8422 -4.7987 -0.2523 16 7 4.7463 -4.5964 -2.0503 17 6 5.7613 -4.0360 -2.7789 18 1 6.6165 -3.6103 -2.2750 19 6 5.6912 -4.0151 -4.1651 20 7 4.6488 -4.5334 -4.7791 21 14 7.0755 -3.2500 -5.1589 22 1 8.3441 -3.9676 -4.8747 23 1 6.7613 -3.3534 -6.6065 24 1 7.2213 -1.8202 -4.7855 25 6 4.2604 -3.3075 0.0174 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 2.0306 2.1595 -0.0004 30 1 4.5046 1.2917 0.0003 31 1 1.9490 -5.1827 0.9364 32 1 1.9117 -5.1912 -0.8490 33 1 4.7643 -7.3521 -0.9905 34 1 3.0861 -7.6335 -0.4682 35 1 3.4169 -6.6123 -1.8880 36 1 3.9781 -4.9785 -2.5028 37 1 4.5999 -4.5192 -5.7478 38 1 4.5381 -2.4550 -0.6025 39 1 4.6259 -3.1706 1.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054384660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:41 Heat of formation + Delta-G solvation = -24.969981 kcal Electronic energy + Delta-G solvation = -22370.512363 eV Core-core repulsion = 19086.385331 eV Total energy + Delta-G solvation = -3284.127032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.66419 -40.97870 -39.04725 -35.77754 -35.05289 -33.93734 -32.31727 -31.32416 -29.46581 -28.87613 -27.17203 -25.82617 -24.17593 -22.81242 -22.08771 -20.69804 -20.36392 -19.41766 -18.42859 -17.63687 -17.36410 -17.00153 -16.43463 -16.32418 -15.67766 -15.38029 -14.78070 -14.61434 -14.45905 -14.16232 -13.94973 -13.88389 -13.61765 -13.50503 -13.41955 -12.99290 -12.86164 -12.79492 -12.74053 -12.29457 -12.19965 -11.98043 -11.49816 -11.39228 -11.21180 -10.96323 -10.65671 -9.90447 -9.46688 -8.96241 -7.92448 -5.20564 0.05064 1.41439 1.47468 1.49857 1.55733 1.68290 2.10093 2.17821 2.56863 3.37968 3.43909 3.76594 3.82568 3.87211 3.92068 3.94560 4.08781 4.40510 4.53822 4.60532 4.61330 4.64086 4.71392 4.74049 4.76810 4.85485 4.95289 4.98766 5.09961 5.18236 5.20250 5.24225 5.36368 5.51212 5.52780 5.58582 5.95382 6.28458 6.40615 6.94998 7.35613 8.10935 8.33446 9.30898 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.006638 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.460472 B = 4217.437298 C = 5395.852346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.101 4.101 3 C -0.230 4.230 4 C 0.001 3.999 5 O -0.169 6.169 6 C -0.114 4.114 7 C 0.601 3.399 8 O -0.564 6.564 9 N -0.598 5.598 10 C 0.115 3.885 11 C -0.097 4.097 12 H 0.121 0.879 13 C -0.126 4.126 14 C 0.160 3.840 15 H 0.087 0.913 16 N -0.721 5.721 17 C -0.234 4.234 18 H 0.082 0.918 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.969 3.031 22 H -0.274 1.274 23 H -0.302 1.302 24 H -0.280 1.280 25 C 0.079 3.921 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.187 0.813 30 H 0.251 0.749 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.031 0.969 36 H 0.373 0.627 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 7.299 14.172 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.249 4.249 4 C -0.068 4.068 5 O -0.064 6.064 6 C -0.165 4.165 7 C 0.392 3.608 8 O -0.447 6.447 9 N -0.328 5.328 10 C -0.007 4.007 11 C -0.116 4.116 12 H 0.139 0.861 13 C -0.184 4.184 14 C 0.049 3.951 15 H 0.105 0.895 16 N -0.360 5.360 17 C -0.366 4.366 18 H 0.100 0.900 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.798 3.202 22 H -0.200 1.200 23 H -0.229 1.229 24 H -0.206 1.206 25 C -0.046 4.046 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.204 0.796 30 H 0.267 0.733 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.207 0.793 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.754 7.039 14.117 15.872 hybrid contribution 0.155 0.412 -1.339 1.409 sum -1.599 7.451 12.779 14.878 Atomic orbital electron populations 1.20401 0.87705 1.03757 1.02763 1.21038 0.98409 0.91555 0.99368 1.22058 0.91919 1.00660 1.10266 1.25371 1.01624 0.80129 0.99721 1.84229 1.27640 1.23999 1.70560 1.21683 0.82639 0.94345 1.17883 1.16540 0.84697 0.82548 0.77053 1.90752 1.16397 1.83126 1.54435 1.48326 1.07892 1.06514 1.70112 1.22101 0.98379 0.78862 1.01384 1.22505 0.92772 0.94884 1.01488 0.86086 1.21529 1.02256 0.96303 0.98273 1.21684 0.98001 0.91597 0.83779 0.89518 1.42542 1.22965 1.69941 1.00593 1.19605 0.98922 1.29084 0.89015 0.89989 1.25516 1.00200 1.03121 0.97917 1.69824 1.31751 1.52762 1.07854 0.85279 0.79283 0.78474 0.77142 1.19985 1.22917 1.20612 1.23407 0.78196 1.01977 1.01034 0.91216 0.88573 0.91620 0.79553 0.73333 0.89919 0.93708 0.92112 0.90749 0.94968 0.79343 0.94337 0.91656 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 9.82 71.24 0.70 -1.72 16 2 C -0.10 -3.06 6.20 -19.74 -0.12 -3.18 16 3 C -0.23 -5.27 10.83 22.07 0.24 -5.03 16 4 C 0.00 0.02 12.08 67.10 0.81 0.83 16 5 O -0.17 -5.41 7.86 -5.05 -0.04 -5.45 16 6 C -0.11 -4.09 6.93 24.07 0.17 -3.93 16 7 C 0.60 24.14 7.82 86.44 0.68 24.82 16 8 O -0.56 -24.57 15.06 -4.31 -0.06 -24.64 16 9 N -0.60 -22.26 3.33 -816.48 -2.72 -24.97 16 10 C 0.11 3.82 6.47 86.73 0.56 4.38 16 11 C -0.10 -2.85 3.40 -9.60 -0.03 -2.88 16 12 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 13 C -0.13 -3.85 8.73 71.98 0.63 -3.22 16 14 C 0.16 5.77 3.44 46.39 0.16 5.93 16 15 H 0.09 2.90 8.13 -2.39 -0.02 2.88 16 16 N -0.72 -34.60 4.74 -316.37 -1.50 -36.10 16 17 C -0.23 -12.44 9.98 84.03 0.84 -11.60 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 20 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 21 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 C 0.08 2.74 5.86 86.86 0.51 3.25 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 2.04 6.43 -2.38 -0.02 2.02 16 29 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.25 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.04 1.71 7.78 -2.39 -0.02 1.69 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.03 1.22 6.37 -2.39 -0.02 1.21 16 36 H 0.37 19.96 6.09 -92.71 -0.56 19.39 16 37 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.07 2.62 6.22 -2.39 -0.01 2.61 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -71.88 322.24 4.09 -67.79 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.50 Total: 31.31 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.60 Total: 3.86 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -3.93 Total: -120.44 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.10 Total: -30.09 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.88 4.09 -67.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.819 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds