Wall clock time and date at job start Tue Mar 31 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.40361 * 126.64222 * 2 1 4 4 C 1.35133 * 107.11128 * 180.02562 * 3 2 1 5 5 O 1.33934 * 108.76698 * 359.76952 * 4 3 2 6 6 C 1.34910 * 109.38445 * 0.38412 * 5 4 3 7 7 C 1.46654 * 125.98972 * 179.88542 * 6 5 4 8 8 O 1.21696 * 120.00322 * 179.68557 * 7 6 5 9 9 N 1.34776 * 119.99969 * 359.68837 * 7 6 5 10 10 C 1.47023 * 125.64926 * 0.04143 * 9 7 6 11 11 C 1.54320 * 107.27576 * 181.02438 * 10 9 7 12 12 H 1.08990 * 110.72081 * 263.83328 * 11 10 9 13 13 N 1.46496 * 110.72131 * 140.55218 * 11 10 9 14 14 C 1.36937 * 120.00105 * 91.48188 * 13 11 10 15 15 H 1.08011 * 119.99816 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00719 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00543 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99702 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47242 * 89.99720 * 18 16 14 20 20 H 1.48495 * 109.47349 * 209.99796 * 18 16 14 21 21 H 1.48502 * 109.47132 * 330.00094 * 18 16 14 22 22 C 1.55165 * 102.94006 * 22.19194 * 11 10 9 23 23 H 1.08999 * 111.03290 * 82.58574 * 22 11 10 24 24 C 1.52997 * 111.00426 * 206.42285 * 22 11 10 25 25 C 1.47424 * 125.64837 * 180.02562 * 9 7 6 26 26 H 1.08994 * 109.47049 * 269.95582 * 1 2 3 27 27 H 1.09004 * 109.46814 * 29.95245 * 1 2 3 28 28 H 1.09002 * 109.46893 * 149.95344 * 1 2 3 29 29 H 1.07992 * 126.44925 * 0.04416 * 3 2 1 30 30 H 1.08000 * 125.61862 * 179.97438 * 4 3 2 31 31 H 1.09006 * 109.88301 * 300.44420 * 10 9 7 32 32 H 1.09003 * 109.88253 * 61.44811 * 10 9 7 33 33 H 0.97005 * 120.00849 * 271.48063 * 13 11 10 34 34 H 0.96994 * 120.00255 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.47153 * 173.64942 * 24 22 11 36 36 H 1.09001 * 109.46832 * 53.65133 * 24 22 11 37 37 H 1.09004 * 109.47261 * 293.65114 * 24 22 11 38 38 H 1.08992 * 110.37079 * 37.06522 * 25 9 7 39 39 H 1.09005 * 110.45662 * 274.78693 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0006 5 8 3.6005 -0.6648 0.0042 6 6 2.3221 -1.0956 -0.0007 7 6 1.8843 -2.4952 -0.0002 8 8 0.6968 -2.7614 0.0009 9 7 2.7971 -3.4868 -0.0008 10 6 4.2564 -3.3081 -0.0012 11 6 4.8904 -4.7148 -0.0283 12 1 5.1512 -5.0397 0.9789 13 7 6.0659 -4.7368 -0.9023 14 6 7.3084 -4.4840 -0.3853 15 1 7.4218 -4.2679 0.6669 16 6 8.4223 -4.5053 -1.2132 17 7 9.6165 -4.2618 -0.7163 18 14 8.2263 -4.8783 -3.0331 19 1 8.0060 -3.6120 -3.7770 20 1 9.4554 -5.5414 -3.5377 21 1 7.0615 -5.7779 -3.2314 22 6 3.7552 -5.5963 -0.6128 23 1 3.7366 -5.5395 -1.7011 24 6 3.8907 -7.0466 -0.1445 25 6 2.4976 -4.9303 -0.0010 26 1 -0.3633 -0.0008 1.0276 27 1 -0.3633 0.8905 -0.5131 28 1 -0.3633 -0.8896 -0.5146 29 1 2.0307 2.1595 0.0007 30 1 4.5047 1.2916 -0.0011 31 1 4.5610 -2.7471 -0.8848 32 1 4.5651 -2.7771 0.8993 33 1 5.9641 -4.9305 -1.8474 34 1 10.3949 -4.2772 -1.2949 35 1 3.0230 -7.6177 -0.4749 36 1 3.9502 -7.0730 0.9436 37 1 4.7954 -7.4823 -0.5686 38 1 1.6220 -5.1361 -0.6164 39 1 2.3373 -5.2862 1.0168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054384661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:46 Heat of formation + Delta-G solvation = -4.703283 kcal Electronic energy + Delta-G solvation = -21985.686972 eV Core-core repulsion = 18702.438770 eV Total energy + Delta-G solvation = -3283.248202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.66562 -39.72523 -37.71508 -34.44477 -33.92540 -32.60485 -31.11068 -30.37132 -28.13625 -27.74569 -26.10514 -23.91692 -22.60918 -21.40609 -20.85676 -20.20415 -19.22372 -17.61219 -17.43492 -16.49045 -16.16954 -15.89309 -15.25064 -14.58970 -14.27330 -13.74156 -13.56339 -13.32769 -13.22735 -13.09668 -12.95798 -12.66602 -12.59140 -12.47133 -12.24912 -11.81528 -11.70691 -11.46446 -11.16186 -10.81582 -10.67509 -10.38785 -10.13553 -9.97577 -9.71835 -9.67137 -9.05583 -8.74103 -8.33916 -7.42753 -5.86799 -3.24667 1.11410 2.32803 2.73472 3.23494 3.25103 3.31080 3.34252 3.40007 4.49946 4.52624 4.75065 4.76966 4.94067 5.00663 5.04670 5.41432 5.42322 5.49497 5.51225 5.63094 5.66276 5.68404 5.71689 5.77210 5.82011 6.00250 6.06717 6.08624 6.12019 6.29633 6.34694 6.40405 6.44048 6.47550 6.73034 6.94589 7.59555 7.87402 8.14765 8.31740 9.08179 9.80481 9.98627 11.30876 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017848 B = 0.005480 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.409822 B = 5107.974330 C = 6220.782327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.095 4.095 3 C -0.231 4.231 4 C -0.002 4.002 5 O -0.150 6.150 6 C -0.077 4.077 7 C 0.613 3.387 8 O -0.534 6.534 9 N -0.605 5.605 10 C 0.076 3.924 11 C 0.183 3.817 12 H 0.079 0.921 13 N -0.734 5.734 14 C -0.252 4.252 15 H 0.093 0.907 16 C 0.011 3.989 17 N -0.929 5.929 18 Si 0.882 3.118 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.119 4.119 23 H 0.081 0.919 24 C -0.133 4.133 25 C 0.115 3.885 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.209 0.791 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.364 0.636 34 H 0.261 0.739 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.373 5.640 1.301 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.250 4.250 4 C -0.073 4.073 5 O -0.044 6.044 6 C -0.129 4.129 7 C 0.402 3.598 8 O -0.414 6.414 9 N -0.336 5.336 10 C -0.050 4.050 11 C 0.071 3.929 12 H 0.096 0.904 13 N -0.375 5.375 14 C -0.381 4.381 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.576 5.576 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.139 4.139 23 H 0.100 0.900 24 C -0.191 4.191 25 C -0.007 4.007 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.171 0.829 30 H 0.226 0.774 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.198 0.802 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.537 5.362 1.453 16.501 hybrid contribution 0.192 0.266 -1.343 1.382 sum -15.346 5.628 0.110 16.345 Atomic orbital electron populations 1.20383 0.88432 1.03322 1.02650 1.20583 0.97483 0.91003 1.00774 1.21686 0.92442 0.99940 1.10922 1.24446 0.99920 0.81057 1.01867 1.84273 1.28022 1.22282 1.69827 1.21802 0.81665 0.94604 1.14843 1.16193 0.84784 0.81518 0.77329 1.90803 1.15368 1.82404 1.52817 1.48410 1.07997 1.06312 1.70931 1.23340 0.76955 1.02166 1.02531 1.21232 0.86096 0.89978 0.95576 0.90350 1.42698 1.02950 1.85031 1.06864 1.19074 0.82157 1.41069 0.95843 0.88967 1.24655 0.95142 1.01255 0.97481 1.69692 0.97786 1.55235 1.34875 0.86602 0.77044 0.78246 0.86937 1.21020 1.21606 1.20214 1.22710 0.94548 0.95891 1.00736 0.90020 1.21609 1.01869 0.94280 1.01346 1.22298 0.98321 0.78952 1.01146 0.91050 0.91727 0.89629 0.82896 0.77449 0.90622 0.91447 0.80248 0.92904 0.93018 0.92409 0.91479 0.90566 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.81 36.01 0.35 -0.72 16 2 C -0.10 -1.31 6.20 -104.43 -0.65 -1.96 16 3 C -0.23 -2.64 10.83 -39.89 -0.43 -3.07 16 4 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 5 O -0.15 -2.30 8.27 5.00 0.04 -2.25 16 6 C -0.08 -1.22 6.95 -36.80 -0.26 -1.48 16 7 C 0.61 10.43 7.82 -12.86 -0.10 10.33 16 8 O -0.53 -9.70 14.99 5.19 0.08 -9.62 16 9 N -0.60 -9.85 3.33 -172.08 -0.57 -10.43 16 10 C 0.08 1.31 5.30 -3.07 -0.02 1.30 16 11 C 0.18 3.28 3.08 -66.10 -0.20 3.08 16 12 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 13 N -0.73 -16.19 4.95 -51.65 -0.26 -16.45 16 14 C -0.25 -6.68 10.44 -15.06 -0.16 -6.84 16 15 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 16 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 17 N -0.93 -28.11 13.97 55.49 0.78 -27.33 16 18 Si 0.88 21.25 27.74 -169.99 -4.71 16.54 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 22 C -0.12 -1.76 3.27 -88.48 -0.29 -2.04 16 23 H 0.08 1.24 8.01 -51.93 -0.42 0.83 16 24 C -0.13 -1.73 9.29 37.16 0.35 -1.39 16 25 C 0.12 1.64 6.38 -2.54 -0.02 1.62 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.15 6.45 -51.93 -0.33 0.81 16 29 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.08 1.43 7.57 -51.93 -0.39 1.04 16 32 H 0.07 1.19 7.78 -51.93 -0.40 0.79 16 33 H 0.36 7.98 5.62 -40.82 -0.23 7.75 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 39 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -31.42 323.55 -6.50 -37.93 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.57 Total: 7.37 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.16 Total: -0.63 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.05 Total: -54.20 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.12 Total: -11.88 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.42 -6.50 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.223 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds