Wall clock time and date at job start Tue Mar 31 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.40361 * 126.64222 * 2 1 4 4 C 1.35133 * 107.11128 * 180.02562 * 3 2 1 5 5 O 1.33934 * 108.76698 * 359.76952 * 4 3 2 6 6 C 1.34910 * 109.38445 * 0.38412 * 5 4 3 7 7 C 1.46654 * 125.98972 * 179.88542 * 6 5 4 8 8 O 1.21696 * 120.00322 * 179.68557 * 7 6 5 9 9 N 1.34776 * 119.99969 * 359.68837 * 7 6 5 10 10 C 1.47023 * 125.64926 * 0.04143 * 9 7 6 11 11 C 1.54320 * 107.27576 * 181.02438 * 10 9 7 12 12 H 1.08990 * 110.72081 * 263.83328 * 11 10 9 13 13 N 1.46496 * 110.72131 * 140.55218 * 11 10 9 14 14 C 1.36937 * 120.00105 * 91.48188 * 13 11 10 15 15 H 1.08011 * 119.99816 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00719 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00543 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99702 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47242 * 89.99720 * 18 16 14 20 20 H 1.48495 * 109.47349 * 209.99796 * 18 16 14 21 21 H 1.48502 * 109.47132 * 330.00094 * 18 16 14 22 22 C 1.55165 * 102.94006 * 22.19194 * 11 10 9 23 23 H 1.08999 * 111.03290 * 82.58574 * 22 11 10 24 24 C 1.52997 * 111.00426 * 206.42285 * 22 11 10 25 25 C 1.47424 * 125.64837 * 180.02562 * 9 7 6 26 26 H 1.08994 * 109.47049 * 269.95582 * 1 2 3 27 27 H 1.09004 * 109.46814 * 29.95245 * 1 2 3 28 28 H 1.09002 * 109.46893 * 149.95344 * 1 2 3 29 29 H 1.07992 * 126.44925 * 0.04416 * 3 2 1 30 30 H 1.08000 * 125.61862 * 179.97438 * 4 3 2 31 31 H 1.09006 * 109.88301 * 300.44420 * 10 9 7 32 32 H 1.09003 * 109.88253 * 61.44811 * 10 9 7 33 33 H 0.97005 * 120.00849 * 271.48063 * 13 11 10 34 34 H 0.96994 * 120.00255 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.47153 * 173.64942 * 24 22 11 36 36 H 1.09001 * 109.46832 * 53.65133 * 24 22 11 37 37 H 1.09004 * 109.47261 * 293.65114 * 24 22 11 38 38 H 1.08992 * 110.37079 * 37.06522 * 25 9 7 39 39 H 1.09005 * 110.45662 * 274.78693 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0006 5 8 3.6005 -0.6648 0.0042 6 6 2.3221 -1.0956 -0.0007 7 6 1.8843 -2.4952 -0.0002 8 8 0.6968 -2.7614 0.0009 9 7 2.7971 -3.4868 -0.0008 10 6 4.2564 -3.3081 -0.0012 11 6 4.8904 -4.7148 -0.0283 12 1 5.1512 -5.0397 0.9789 13 7 6.0659 -4.7368 -0.9023 14 6 7.3084 -4.4840 -0.3853 15 1 7.4218 -4.2679 0.6669 16 6 8.4223 -4.5053 -1.2132 17 7 9.6165 -4.2618 -0.7163 18 14 8.2263 -4.8783 -3.0331 19 1 8.0060 -3.6120 -3.7770 20 1 9.4554 -5.5414 -3.5377 21 1 7.0615 -5.7779 -3.2314 22 6 3.7552 -5.5963 -0.6128 23 1 3.7366 -5.5395 -1.7011 24 6 3.8907 -7.0466 -0.1445 25 6 2.4976 -4.9303 -0.0010 26 1 -0.3633 -0.0008 1.0276 27 1 -0.3633 0.8905 -0.5131 28 1 -0.3633 -0.8896 -0.5146 29 1 2.0307 2.1595 0.0007 30 1 4.5047 1.2916 -0.0011 31 1 4.5610 -2.7471 -0.8848 32 1 4.5651 -2.7771 0.8993 33 1 5.9641 -4.9305 -1.8474 34 1 10.3949 -4.2772 -1.2949 35 1 3.0230 -7.6177 -0.4749 36 1 3.9502 -7.0730 0.9436 37 1 4.7954 -7.4823 -0.5686 38 1 1.6220 -5.1361 -0.6164 39 1 2.3373 -5.2862 1.0168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054384661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:44 Heat of formation + Delta-G solvation = -25.105716 kcal Electronic energy + Delta-G solvation = -21986.571688 eV Core-core repulsion = 18702.438770 eV Total energy + Delta-G solvation = -3284.132918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.69914 -41.02779 -39.07677 -36.06940 -35.09668 -34.02340 -32.93869 -31.36911 -29.58782 -28.91518 -27.19514 -25.68078 -23.86649 -22.61932 -22.09509 -21.58977 -20.37682 -19.54268 -18.64302 -17.68645 -17.35843 -17.14683 -16.57095 -16.25308 -15.72357 -15.13689 -14.93084 -14.75291 -14.50259 -14.29474 -14.06656 -13.88565 -13.77756 -13.67572 -13.47884 -13.16833 -12.96695 -12.93646 -12.78028 -12.25571 -12.16303 -11.93332 -11.82511 -11.52455 -11.25425 -10.98745 -10.67993 -9.94034 -9.51029 -9.38167 -8.02007 -5.37376 0.00439 1.38506 1.39428 1.41210 1.48422 1.63368 2.02832 2.09573 2.48338 3.26165 3.29755 3.59216 3.70959 3.78945 3.82171 3.91977 4.08987 4.27817 4.36705 4.51893 4.58333 4.60430 4.62336 4.74500 4.76647 4.84213 4.89231 5.01997 5.08590 5.10935 5.15491 5.19600 5.27737 5.45167 5.49404 5.76859 5.92713 6.21001 6.29854 6.87973 7.05788 7.79265 7.98520 9.18899 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017848 B = 0.005480 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.409822 B = 5107.974330 C = 6220.782327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.093 4.093 3 C -0.228 4.228 4 C 0.001 3.999 5 O -0.174 6.174 6 C -0.121 4.121 7 C 0.608 3.392 8 O -0.552 6.552 9 N -0.608 5.608 10 C 0.093 3.907 11 C 0.176 3.824 12 H 0.074 0.926 13 N -0.735 5.735 14 C -0.231 4.231 15 H 0.062 0.938 16 C -0.054 4.054 17 N -0.980 5.980 18 Si 0.947 3.053 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.250 1.250 22 C -0.106 4.106 23 H 0.081 0.919 24 C -0.129 4.129 25 C 0.116 3.884 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.187 0.813 30 H 0.244 0.756 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.367 0.633 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.274 6.173 0.502 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.247 4.247 4 C -0.069 4.069 5 O -0.070 6.070 6 C -0.173 4.173 7 C 0.399 3.601 8 O -0.434 6.434 9 N -0.339 5.339 10 C -0.033 4.033 11 C 0.065 3.935 12 H 0.092 0.908 13 N -0.377 5.377 14 C -0.362 4.362 15 H 0.080 0.920 16 C -0.246 4.246 17 N -0.630 5.630 18 Si 0.774 3.226 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.174 1.174 22 C -0.126 4.126 23 H 0.100 0.900 24 C -0.187 4.187 25 C -0.006 4.006 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.201 0.799 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.511 5.879 0.662 18.484 hybrid contribution 0.721 0.220 -0.985 1.240 sum -16.790 6.099 -0.322 17.867 Atomic orbital electron populations 1.20424 0.87287 1.03702 1.03219 1.21039 0.98488 0.91238 0.98808 1.22075 0.91708 1.00873 1.10050 1.25312 1.01695 0.80022 0.99867 1.84240 1.28023 1.24121 1.70621 1.21774 0.82463 0.94633 1.18404 1.16416 0.84617 0.82208 0.76857 1.90777 1.15824 1.82941 1.53854 1.48422 1.07208 1.07214 1.71059 1.22915 0.77908 1.01107 1.01326 1.21406 0.85851 0.91163 0.95035 0.90792 1.42622 1.02577 1.85075 1.07450 1.19014 0.83940 1.38723 0.94521 0.91978 1.25389 0.94784 1.02324 1.02127 1.69862 0.98735 1.57851 1.36538 0.85538 0.77474 0.78353 0.81193 1.20898 1.22381 1.17416 1.22627 0.92916 0.96454 1.00584 0.90038 1.21595 1.02400 0.92974 1.01731 1.22420 0.98196 0.77756 1.02185 0.90273 0.88996 0.91542 0.79528 0.74029 0.92278 0.92316 0.79873 0.93321 0.90304 0.91775 0.92906 0.89609 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 9.81 71.24 0.70 -1.27 16 2 C -0.09 -2.41 6.20 -19.74 -0.12 -2.53 16 3 C -0.23 -4.61 10.83 22.07 0.24 -4.37 16 4 C 0.00 0.01 12.08 67.10 0.81 0.82 16 5 O -0.17 -5.29 8.27 -5.03 -0.04 -5.33 16 6 C -0.12 -3.82 6.95 24.07 0.17 -3.65 16 7 C 0.61 20.64 7.82 86.44 0.68 21.31 16 8 O -0.55 -19.92 14.99 -4.33 -0.06 -19.98 16 9 N -0.61 -19.52 3.33 -816.55 -2.72 -22.23 16 10 C 0.09 3.26 5.30 86.73 0.46 3.72 16 11 C 0.18 6.23 3.08 46.18 0.14 6.37 16 12 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 13 N -0.74 -32.10 4.95 -317.33 -1.57 -33.67 16 14 C -0.23 -12.45 10.44 84.03 0.88 -11.57 16 15 H 0.06 3.67 8.06 -2.90 -0.02 3.64 16 16 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 17 N -0.98 -60.84 13.97 21.65 0.30 -60.54 16 18 Si 0.95 43.86 27.74 68.60 1.90 45.76 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.25 -10.34 6.52 99.48 0.65 -9.70 16 22 C -0.11 -2.95 3.27 -9.41 -0.03 -2.98 16 23 H 0.08 2.31 8.01 -2.39 -0.02 2.29 16 24 C -0.13 -3.06 9.29 71.98 0.67 -2.39 16 25 C 0.12 3.11 6.38 86.85 0.55 3.66 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.07 1.73 6.45 -2.39 -0.02 1.72 16 29 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.24 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.06 2.26 7.57 -2.38 -0.02 2.25 16 32 H 0.06 2.13 7.78 -2.39 -0.02 2.11 16 33 H 0.37 15.56 5.62 -92.70 -0.52 15.04 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 37 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 38 H 0.09 2.18 8.04 -2.39 -0.02 2.16 16 39 H 0.09 2.06 8.03 -2.38 -0.02 2.04 16 Total: -1.00 -69.41 323.55 3.89 -65.51 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.47 Total: 25.96 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.61 Total: 4.53 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -3.99 Total: -116.45 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.11 Total: -25.31 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.76 kcal Total: -69.41 3.89 -65.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.408 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds