Wall clock time and date at job start Tue Mar 31 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40367 * 126.64931 * 2 1 4 4 C 1.35125 * 107.11725 * 180.22808 * 3 2 1 5 5 O 1.33928 * 108.76805 * 359.78062 * 4 3 2 6 6 C 1.34912 * 109.38752 * 0.02562 * 5 4 3 7 7 C 1.46656 * 125.99172 * 179.97438 * 6 5 4 8 8 O 1.21699 * 120.00070 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99743 * 0.02562 * 7 6 5 10 10 C 1.47427 * 125.64714 * 179.97438 * 9 7 6 11 11 C 1.54904 * 104.83039 * 155.91404 * 10 9 7 12 12 H 1.08997 * 111.00893 * 278.93753 * 11 10 9 13 13 C 1.53001 * 111.03801 * 155.09964 * 11 10 9 14 14 C 1.55164 * 101.58091 * 37.01483 * 11 10 9 15 15 H 1.09002 * 110.71528 * 205.95489 * 14 11 10 16 16 N 1.46496 * 110.71857 * 82.85933 * 14 11 10 17 17 C 1.36945 * 119.99718 * 157.44207 * 16 14 11 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47486 * 125.59481 * 0.03024 * 9 7 6 26 26 H 1.09005 * 109.47005 * 270.14495 * 1 2 3 27 27 H 1.09003 * 109.47539 * 30.14653 * 1 2 3 28 28 H 1.09006 * 109.47347 * 150.15009 * 1 2 3 29 29 H 1.07998 * 126.43693 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.61701 * 179.78833 * 4 3 2 31 31 H 1.08998 * 110.36254 * 37.08154 * 10 9 7 32 32 H 1.08996 * 110.36715 * 274.75584 * 10 9 7 33 33 H 1.08997 * 109.47204 * 307.78741 * 13 11 10 34 34 H 1.08999 * 109.47000 * 67.78382 * 13 11 10 35 35 H 1.08998 * 109.47524 * 187.78451 * 13 11 10 36 36 H 0.96996 * 120.00499 * 337.43937 * 16 14 11 37 37 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 38 38 H 1.08997 * 110.03701 * 61.63491 * 25 9 7 39 39 H 1.09006 * 109.96013 * 300.32493 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0051 5 8 3.6005 -0.6648 -0.0034 6 6 2.3220 -1.0956 0.0023 7 6 1.8842 -2.4953 0.0052 8 8 0.6967 -2.7614 0.0099 9 7 2.7971 -3.4868 0.0028 10 6 2.4977 -4.9304 0.0058 11 6 3.7532 -5.5970 -0.6096 12 1 3.7317 -5.5409 -1.6979 13 6 3.8908 -7.0469 -0.1408 14 6 4.8903 -4.7148 -0.0296 15 1 5.7640 -4.7345 -0.6810 16 7 5.2449 -5.1500 1.3235 17 6 6.4780 -4.8497 1.8382 18 1 7.1890 -4.2925 1.2463 19 6 6.8138 -5.2616 3.1204 20 7 5.9474 -5.9412 3.8416 21 14 8.4960 -4.8526 3.8222 22 1 8.6049 -5.4004 5.1982 23 1 9.5493 -5.4533 2.9650 24 1 8.6709 -3.3785 3.8616 25 6 4.2608 -3.3061 -0.0023 26 1 -0.3633 0.0026 1.0277 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3634 -0.8914 -0.5115 29 1 2.0306 2.1594 -0.0004 30 1 4.5046 1.2916 -0.0097 31 1 1.6199 -5.1369 -0.6065 32 1 2.3418 -5.2833 1.0252 33 1 3.8408 -7.0832 0.9474 34 1 3.0813 -7.6432 -0.5618 35 1 4.8483 -7.4473 -0.4741 36 1 4.6065 -5.6507 1.8550 37 1 6.1824 -6.2293 4.7375 38 1 4.5749 -2.7769 0.8974 39 1 4.5638 -2.7476 -0.8880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054384662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:51 Heat of formation + Delta-G solvation = -5.280987 kcal Electronic energy + Delta-G solvation = -22122.618931 eV Core-core repulsion = 18839.345678 eV Total energy + Delta-G solvation = -3283.273253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61662 -39.58089 -37.61480 -34.28322 -33.73498 -32.40788 -30.59396 -30.24558 -27.99667 -27.56329 -25.92861 -23.89329 -22.86554 -21.67109 -20.91441 -19.33381 -19.07228 -17.67743 -17.06494 -16.37790 -16.08069 -15.64542 -15.01718 -14.59300 -14.24846 -13.72189 -13.62051 -13.19859 -13.11509 -12.95295 -12.87312 -12.59380 -12.51020 -12.10954 -11.92701 -11.74874 -11.52219 -11.13889 -10.93021 -10.76680 -10.46719 -10.29842 -10.00014 -9.85315 -9.66961 -9.65136 -9.01641 -8.65368 -8.19950 -7.07322 -5.84075 -3.14145 1.18750 2.37120 2.81329 3.35230 3.39345 3.39734 3.44539 3.45533 4.52477 4.62664 4.80031 4.84053 5.07869 5.18679 5.33585 5.45661 5.53402 5.56188 5.63235 5.73833 5.75060 5.79817 5.91694 5.97412 6.05165 6.15300 6.18456 6.27442 6.33242 6.39731 6.43291 6.55471 6.58330 6.77635 6.92304 7.00249 7.63173 7.76941 8.29139 8.34025 9.45617 10.00026 10.35052 11.38021 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.005456 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.581952 B = 5130.290411 C = 6175.756255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.099 4.099 3 C -0.228 4.228 4 C -0.010 4.010 5 O -0.152 6.152 6 C -0.069 4.069 7 C 0.610 3.390 8 O -0.535 6.535 9 N -0.597 5.597 10 C 0.116 3.884 11 C -0.115 4.115 12 H 0.079 0.921 13 C -0.130 4.130 14 C 0.172 3.828 15 H 0.072 0.928 16 N -0.711 5.711 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.074 3.926 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.207 0.793 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.081 0.919 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 9.448 -10.163 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.247 4.247 4 C -0.080 4.080 5 O -0.046 6.046 6 C -0.121 4.121 7 C 0.399 3.601 8 O -0.416 6.416 9 N -0.328 5.328 10 C -0.006 4.006 11 C -0.135 4.135 12 H 0.097 0.903 13 C -0.188 4.188 14 C 0.059 3.941 15 H 0.090 0.910 16 N -0.352 5.352 17 C -0.378 4.378 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.051 4.051 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.170 0.830 30 H 0.224 0.776 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.548 9.153 -10.079 15.108 hybrid contribution 0.844 0.563 0.753 1.263 sum -5.704 9.716 -9.327 14.626 Atomic orbital electron populations 1.20378 0.88438 1.03235 1.02725 1.20578 0.97518 0.90988 1.01084 1.21672 0.92482 0.99900 1.10684 1.24365 0.99836 0.81134 1.02649 1.84240 1.28252 1.22184 1.69946 1.21874 0.81465 0.94725 1.14083 1.16182 0.84867 0.81483 0.77603 1.90801 1.15406 1.82345 1.53033 1.48455 1.07795 1.06317 1.70265 1.22319 0.98010 0.78848 1.01428 1.22641 0.95002 0.96288 0.99530 0.90256 1.21536 1.01056 0.93492 1.02687 1.21226 0.94411 0.89261 0.89181 0.90970 1.42437 1.16146 1.65373 1.11251 1.19186 0.91456 1.29724 0.97399 0.91050 1.24740 0.98117 1.00590 0.96981 1.69647 1.34759 1.42343 1.10976 0.86274 0.83876 0.77876 0.78163 1.21701 1.21176 1.21266 1.23452 0.77888 1.02117 1.01658 0.91028 0.91807 0.89599 0.82974 0.77613 0.90954 0.90883 0.91156 0.93649 0.92045 0.77757 0.93325 0.90084 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.81 36.00 0.35 -0.80 16 2 C -0.10 -1.43 6.20 -104.43 -0.65 -2.07 16 3 C -0.23 -2.68 10.83 -39.89 -0.43 -3.11 16 4 C -0.01 -0.11 12.08 29.62 0.36 0.25 16 5 O -0.15 -2.34 8.28 5.01 0.04 -2.30 16 6 C -0.07 -1.16 6.95 -36.79 -0.26 -1.41 16 7 C 0.61 11.29 7.82 -12.86 -0.10 11.19 16 8 O -0.54 -10.62 14.99 5.19 0.08 -10.54 16 9 N -0.60 -10.75 3.34 -171.70 -0.57 -11.32 16 10 C 0.12 1.95 6.35 -2.53 -0.02 1.93 16 11 C -0.11 -1.80 3.51 -88.47 -0.31 -2.11 16 12 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.13 -2.03 8.85 37.16 0.33 -1.70 16 14 C 0.17 3.20 3.37 -66.10 -0.22 2.97 16 15 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 16 N -0.71 -16.61 4.55 -51.65 -0.24 -16.85 16 17 C -0.25 -6.46 9.97 -15.06 -0.15 -6.61 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 21 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.07 1.34 5.31 -2.81 -0.01 1.32 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.22 6.45 -51.93 -0.33 0.89 16 29 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.21 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.07 1.13 8.04 -51.93 -0.42 0.72 16 32 H 0.07 1.33 7.99 -51.93 -0.41 0.91 16 33 H 0.07 1.28 6.43 -51.93 -0.33 0.94 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.39 9.70 6.21 -40.82 -0.25 9.45 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.68 7.70 -51.93 -0.40 1.28 16 39 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -30.84 323.20 -6.80 -37.64 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.48 Total: 8.74 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.21 Total: -0.47 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.08 Total: -54.62 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.12 Total: -12.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.84 -6.80 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.363 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds