Wall clock time and date at job start Tue Mar 31 2020 01:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40367 * 126.64931 * 2 1 4 4 C 1.35125 * 107.11725 * 180.22808 * 3 2 1 5 5 O 1.33928 * 108.76805 * 359.78062 * 4 3 2 6 6 C 1.34912 * 109.38752 * 0.02562 * 5 4 3 7 7 C 1.46656 * 125.99172 * 179.97438 * 6 5 4 8 8 O 1.21699 * 120.00070 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99743 * 0.02562 * 7 6 5 10 10 C 1.47427 * 125.64714 * 179.97438 * 9 7 6 11 11 C 1.54904 * 104.83039 * 155.91404 * 10 9 7 12 12 H 1.08997 * 111.00893 * 278.93753 * 11 10 9 13 13 C 1.53001 * 111.03801 * 155.09964 * 11 10 9 14 14 C 1.55164 * 101.58091 * 37.01483 * 11 10 9 15 15 H 1.09002 * 110.71528 * 205.95489 * 14 11 10 16 16 N 1.46496 * 110.71857 * 82.85933 * 14 11 10 17 17 C 1.36945 * 119.99718 * 157.44207 * 16 14 11 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47486 * 125.59481 * 0.03024 * 9 7 6 26 26 H 1.09005 * 109.47005 * 270.14495 * 1 2 3 27 27 H 1.09003 * 109.47539 * 30.14653 * 1 2 3 28 28 H 1.09006 * 109.47347 * 150.15009 * 1 2 3 29 29 H 1.07998 * 126.43693 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.61701 * 179.78833 * 4 3 2 31 31 H 1.08998 * 110.36254 * 37.08154 * 10 9 7 32 32 H 1.08996 * 110.36715 * 274.75584 * 10 9 7 33 33 H 1.08997 * 109.47204 * 307.78741 * 13 11 10 34 34 H 1.08999 * 109.47000 * 67.78382 * 13 11 10 35 35 H 1.08998 * 109.47524 * 187.78451 * 13 11 10 36 36 H 0.96996 * 120.00499 * 337.43937 * 16 14 11 37 37 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 38 38 H 1.08997 * 110.03701 * 61.63491 * 25 9 7 39 39 H 1.09006 * 109.96013 * 300.32493 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0051 5 8 3.6005 -0.6648 -0.0034 6 6 2.3220 -1.0956 0.0023 7 6 1.8842 -2.4953 0.0052 8 8 0.6967 -2.7614 0.0099 9 7 2.7971 -3.4868 0.0028 10 6 2.4977 -4.9304 0.0058 11 6 3.7532 -5.5970 -0.6096 12 1 3.7317 -5.5409 -1.6979 13 6 3.8908 -7.0469 -0.1408 14 6 4.8903 -4.7148 -0.0296 15 1 5.7640 -4.7345 -0.6810 16 7 5.2449 -5.1500 1.3235 17 6 6.4780 -4.8497 1.8382 18 1 7.1890 -4.2925 1.2463 19 6 6.8138 -5.2616 3.1204 20 7 5.9474 -5.9412 3.8416 21 14 8.4960 -4.8526 3.8222 22 1 8.6049 -5.4004 5.1982 23 1 9.5493 -5.4533 2.9650 24 1 8.6709 -3.3785 3.8616 25 6 4.2608 -3.3061 -0.0023 26 1 -0.3633 0.0026 1.0277 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3634 -0.8914 -0.5115 29 1 2.0306 2.1594 -0.0004 30 1 4.5046 1.2916 -0.0097 31 1 1.6199 -5.1369 -0.6065 32 1 2.3418 -5.2833 1.0252 33 1 3.8408 -7.0832 0.9474 34 1 3.0813 -7.6432 -0.5618 35 1 4.8483 -7.4473 -0.4741 36 1 4.6065 -5.6507 1.8550 37 1 6.1824 -6.2293 4.7375 38 1 4.5749 -2.7769 0.8974 39 1 4.5638 -2.7476 -0.8880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054384662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:49 Heat of formation + Delta-G solvation = -24.796314 kcal Electronic energy + Delta-G solvation = -22123.465179 eV Core-core repulsion = 18839.345678 eV Total energy + Delta-G solvation = -3284.119501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.67425 -40.98692 -39.06777 -35.81760 -35.04930 -33.93974 -32.30578 -31.33088 -29.45495 -28.88164 -27.17799 -25.79359 -24.18963 -22.88147 -22.05205 -20.75934 -20.31130 -19.45507 -18.47068 -17.59942 -17.33805 -17.01280 -16.36756 -16.30294 -15.76084 -15.39195 -14.84232 -14.63028 -14.44368 -14.22851 -13.96518 -13.85316 -13.64392 -13.44758 -13.33326 -13.05788 -12.88092 -12.78914 -12.73385 -12.34541 -12.18395 -12.00411 -11.47989 -11.43367 -11.22189 -10.94494 -10.66372 -9.91102 -9.47555 -9.02268 -7.92116 -5.20804 0.03090 1.40889 1.49698 1.51622 1.57534 1.66721 2.06008 2.14623 2.57821 3.38394 3.40902 3.75064 3.81779 3.87200 3.90372 3.94560 4.06650 4.39815 4.53069 4.57343 4.60935 4.62705 4.69031 4.74604 4.75706 4.86692 4.94887 4.99237 5.10344 5.17224 5.20608 5.21476 5.30892 5.49601 5.53972 5.59397 5.94786 6.28852 6.37668 6.91530 7.36481 8.09807 8.33461 9.30992 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.005456 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.581952 B = 5130.290411 C = 6175.756255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.096 4.096 3 C -0.230 4.230 4 C 0.004 3.996 5 O -0.172 6.172 6 C -0.117 4.117 7 C 0.603 3.397 8 O -0.560 6.560 9 N -0.603 5.603 10 C 0.115 3.885 11 C -0.098 4.098 12 H 0.111 0.889 13 C -0.123 4.123 14 C 0.163 3.837 15 H 0.084 0.916 16 N -0.721 5.721 17 C -0.238 4.238 18 H 0.082 0.918 19 C -0.072 4.072 20 N -0.970 5.970 21 Si 0.969 3.031 22 H -0.301 1.301 23 H -0.275 1.275 24 H -0.280 1.280 25 C 0.091 3.909 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.188 0.812 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.375 0.625 37 H 0.249 0.751 38 H 0.050 0.950 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 11.493 -11.921 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.249 4.249 4 C -0.066 4.066 5 O -0.067 6.067 6 C -0.169 4.169 7 C 0.394 3.606 8 O -0.443 6.443 9 N -0.334 5.334 10 C -0.007 4.007 11 C -0.118 4.118 12 H 0.129 0.871 13 C -0.181 4.181 14 C 0.052 3.948 15 H 0.102 0.898 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.228 1.228 23 H -0.201 1.201 24 H -0.206 1.206 25 C -0.034 4.034 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.205 0.795 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.209 0.791 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.896 11.219 -11.893 17.380 hybrid contribution 0.596 0.062 1.223 1.362 sum -5.300 11.281 -10.670 16.407 Atomic orbital electron populations 1.20415 0.87630 1.03746 1.02938 1.21033 0.98395 0.91439 0.98999 1.22074 0.91888 1.00717 1.10217 1.25367 1.01656 0.79927 0.99601 1.84203 1.27742 1.24157 1.70621 1.21662 0.82620 0.94273 1.18320 1.16536 0.84661 0.82483 0.76966 1.90767 1.16186 1.83086 1.54257 1.48538 1.07713 1.06695 1.70452 1.22332 0.99184 0.78647 1.00531 1.22608 0.92725 0.95492 1.00981 0.87060 1.21461 1.02073 0.93942 1.00644 1.21488 0.95954 0.90158 0.87198 0.89771 1.42581 1.15177 1.65401 1.12963 1.19611 0.92327 1.27797 0.97250 0.90061 1.25493 1.01445 1.01680 0.97799 1.69815 1.36629 1.44600 1.10965 0.85279 0.80307 0.77699 0.76866 1.22800 1.20131 1.20641 1.23136 0.77980 1.01196 1.01095 0.90877 0.88682 0.91639 0.79521 0.73331 0.89650 0.93189 0.94368 0.90788 0.92256 0.79125 0.94220 0.93153 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.19 9.81 71.23 0.70 -1.49 16 2 C -0.10 -2.62 6.20 -19.74 -0.12 -2.74 16 3 C -0.23 -4.65 10.83 22.07 0.24 -4.41 16 4 C 0.00 0.08 12.08 67.10 0.81 0.89 16 5 O -0.17 -5.08 8.28 -4.99 -0.04 -5.12 16 6 C -0.12 -3.88 6.95 24.08 0.17 -3.71 16 7 C 0.60 22.67 7.82 86.44 0.68 23.35 16 8 O -0.56 -22.79 14.99 -4.34 -0.07 -22.86 16 9 N -0.60 -21.86 3.34 -815.34 -2.72 -24.58 16 10 C 0.11 3.87 6.35 86.85 0.55 4.43 16 11 C -0.10 -2.97 3.51 -9.40 -0.03 -3.01 16 12 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 13 C -0.12 -3.77 8.85 71.98 0.64 -3.13 16 14 C 0.16 5.94 3.37 46.18 0.16 6.09 16 15 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 16 N -0.72 -34.16 4.55 -317.33 -1.45 -35.61 16 17 C -0.24 -12.50 9.97 84.03 0.84 -11.66 16 18 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 21 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 C 0.09 3.25 5.31 86.64 0.46 3.71 16 26 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.86 6.45 -2.38 -0.02 1.85 16 29 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.25 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 32 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 33 H 0.04 1.42 6.43 -2.39 -0.02 1.40 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.38 19.51 6.21 -92.71 -0.58 18.93 16 37 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.05 2.11 7.70 -2.39 -0.02 2.09 16 39 H 0.08 2.48 7.69 -2.38 -0.02 2.46 16 Total: -1.00 -69.01 323.20 4.06 -64.95 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.48 Total: 29.53 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.54 Total: 4.78 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -3.88 Total: -118.27 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.11 Total: -27.98 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.01 4.06 -64.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054384662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.152 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds