Wall clock time and date at job start Tue Mar 31 2020 00:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34173 * 125.44015 * 2 1 4 4 C 1.47018 * 105.95602 * 180.12825 * 3 2 1 5 5 C 1.47385 * 127.19535 * 179.89433 * 4 3 2 6 6 O 1.21611 * 119.99609 * 359.70650 * 5 4 3 7 7 N 1.34778 * 119.99988 * 179.70803 * 5 4 3 8 8 C 1.47026 * 125.64928 * 0.03830 * 7 5 4 9 9 C 1.54320 * 107.27121 * 181.02163 * 8 7 5 10 10 H 1.08995 * 110.87464 * 263.76261 * 9 8 7 11 11 N 1.46499 * 110.71836 * 140.55726 * 9 8 7 12 12 C 1.36931 * 120.00122 * 91.48076 * 11 9 8 13 13 H 1.08002 * 120.00098 * 0.02562 * 12 11 9 14 14 C 1.38812 * 120.00429 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99535 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00187 * 180.27849 * 14 12 11 17 17 H 1.48497 * 109.47173 * 179.72427 * 16 14 12 18 18 H 1.48506 * 109.46866 * 299.71963 * 16 14 12 19 19 H 1.48501 * 109.47438 * 59.72083 * 16 14 12 20 20 C 1.55166 * 102.94103 * 22.19626 * 9 8 7 21 21 H 1.08999 * 111.00276 * 82.60414 * 20 9 8 22 22 C 1.52997 * 111.00252 * 206.41962 * 20 9 8 23 23 C 1.47422 * 125.64825 * 180.02562 * 7 5 4 24 24 C 1.36420 * 105.61432 * 359.62909 * 4 3 2 25 25 O 1.33654 * 108.39584 * 0.22974 * 24 4 3 26 26 H 1.09002 * 109.47468 * 180.31334 * 1 2 3 27 27 H 1.09003 * 109.46651 * 300.31282 * 1 2 3 28 28 H 1.09001 * 109.47474 * 60.30682 * 1 2 3 29 29 H 1.07998 * 127.02454 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.87987 * 61.60805 * 8 7 5 31 31 H 1.08998 * 109.88499 * 300.44645 * 8 7 5 32 32 H 0.97001 * 119.99790 * 271.47593 * 11 9 8 33 33 H 0.97005 * 119.99717 * 180.02562 * 15 14 12 34 34 H 1.09006 * 109.46778 * 60.00432 * 22 20 9 35 35 H 1.09000 * 109.46875 * 179.97438 * 22 20 9 36 36 H 1.08993 * 109.47442 * 300.00051 * 22 20 9 37 37 H 1.09002 * 110.36688 * 37.06365 * 23 7 5 38 38 H 1.09005 * 110.36706 * 274.74814 * 23 7 5 39 39 H 1.08003 * 125.80128 * 180.21985 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 -0.0032 5 6 4.9025 1.4124 -0.0065 6 8 4.8320 2.6264 -0.0123 7 7 6.1068 0.8072 -0.0032 8 6 6.3361 -0.6450 0.0029 9 6 7.8628 -0.8677 0.0311 10 1 8.2496 -1.0346 -0.9742 11 7 8.2070 -1.9885 0.9095 12 6 8.3055 -3.2546 0.3974 13 1 8.1300 -3.4269 -0.6542 14 6 8.6311 -4.3167 1.2298 15 7 8.8455 -4.1066 2.5113 16 14 8.7731 -6.0426 0.5296 17 1 9.1350 -6.9890 1.6153 18 1 7.4726 -6.4445 -0.0642 19 1 9.8245 -6.0666 -0.5188 20 6 8.3983 0.4684 0.6105 21 1 8.3384 0.4741 1.6988 22 6 9.8300 0.7348 0.1415 23 6 7.4124 1.4919 -0.0055 24 6 3.5789 -0.7583 0.0037 25 8 2.2851 -1.0936 0.0054 26 1 -0.3634 -1.0276 0.0056 27 1 -0.3633 0.5187 0.8872 28 1 -0.3634 0.5091 -0.8927 29 1 1.9596 2.1229 0.0004 30 1 5.9130 -1.0908 -0.8974 31 1 5.8802 -1.0886 0.8880 32 1 8.3651 -1.8336 1.8539 33 1 9.0734 -4.8487 3.0930 34 1 9.8509 0.7926 -0.9469 35 1 10.1804 1.6775 0.5617 36 1 10.4783 -0.0754 0.4749 37 1 7.3693 2.3929 0.6065 38 1 7.7097 1.7386 -1.0248 39 1 4.4102 -1.4478 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054608359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:09 Heat of formation + Delta-G solvation = -4.790894 kcal Electronic energy + Delta-G solvation = -21669.177293 eV Core-core repulsion = 18385.925292 eV Total energy + Delta-G solvation = -3283.252001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52013 -39.68585 -37.45988 -34.14947 -33.14622 -32.83797 -31.63903 -30.75355 -27.72799 -27.21774 -25.90038 -24.29089 -23.03977 -21.42283 -20.67875 -20.02354 -19.21432 -17.23284 -16.86647 -16.36979 -16.27519 -15.81675 -15.27046 -14.65121 -14.23646 -13.69689 -13.61636 -13.28874 -13.25709 -13.16882 -13.08425 -12.73765 -12.63376 -12.39804 -12.16541 -11.83138 -11.53884 -11.18009 -11.04269 -10.75652 -10.65724 -10.33413 -10.07311 -9.88700 -9.73395 -9.71041 -9.06285 -8.56395 -8.38351 -7.17299 -5.91376 -3.23084 1.46509 2.04177 2.84778 3.20389 3.35674 3.41120 3.41902 3.53471 4.45156 4.54892 4.66980 4.88971 4.98408 5.06961 5.18136 5.20207 5.26796 5.41877 5.50213 5.52100 5.57913 5.65968 5.75265 5.80746 5.82847 5.96080 6.03805 6.12631 6.16318 6.29093 6.34617 6.39916 6.53087 6.59285 6.79232 7.04795 7.56235 7.74780 8.25453 8.38526 9.37849 9.90725 10.25767 11.30147 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.005280 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.672721 B = 5302.150204 C = 6930.897063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.024 4.024 3 C -0.164 4.164 4 C -0.232 4.232 5 C 0.599 3.401 6 O -0.552 6.552 7 N -0.609 5.609 8 C 0.059 3.941 9 C 0.178 3.822 10 H 0.072 0.928 11 N -0.710 5.710 12 C -0.254 4.254 13 H 0.073 0.927 14 C -0.005 4.005 15 N -0.928 5.928 16 Si 0.908 3.092 17 H -0.290 1.290 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.115 4.115 21 H 0.084 0.916 22 C -0.133 4.133 23 C 0.116 3.884 24 C 0.018 3.982 25 O -0.174 6.174 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.387 0.613 33 H 0.258 0.742 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 8.351 -5.248 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.184 4.184 4 C -0.236 4.236 5 C 0.389 3.611 6 O -0.432 6.432 7 N -0.342 5.342 8 C -0.067 4.067 9 C 0.065 3.935 10 H 0.090 0.910 11 N -0.350 5.350 12 C -0.385 4.385 13 H 0.091 0.909 14 C -0.202 4.202 15 N -0.574 5.574 16 Si 0.738 3.262 17 H -0.216 1.216 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.135 4.135 21 H 0.102 0.898 22 C -0.191 4.191 23 C -0.007 4.007 24 C -0.052 4.052 25 O -0.069 6.069 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.174 0.826 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.222 0.778 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.310 8.545 -5.322 14.410 hybrid contribution 0.228 -0.884 0.026 0.913 sum -10.082 7.661 -5.296 13.726 Atomic orbital electron populations 1.20297 0.84900 1.04047 1.03561 1.22297 0.94153 0.83897 1.06890 1.22401 0.90008 0.99506 1.06470 1.21413 0.94395 0.93297 1.14531 1.16920 0.81357 0.86494 0.76305 1.90736 1.86836 1.13594 1.52033 1.48327 1.05084 1.08559 1.72206 1.23660 1.02905 0.79036 1.01079 1.21248 0.89177 0.87423 0.95622 0.91046 1.42370 1.82082 1.02563 1.07966 1.19202 1.41301 0.84203 0.93748 0.90948 1.24767 1.01753 0.98164 0.95518 1.69653 1.53239 1.31217 1.03341 0.86276 0.77953 0.84225 0.77744 1.21627 1.21109 1.21100 1.22668 0.94599 0.95310 1.00936 0.89770 1.21600 0.95249 1.01493 1.00715 1.22272 0.81584 0.96047 1.00780 1.25604 0.84049 0.96337 0.99213 1.83784 1.16765 1.35395 1.70982 0.90466 0.89690 0.89726 0.82609 0.91858 0.90436 0.77798 0.93207 0.92834 0.93139 0.91258 0.90798 0.91494 0.75757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.40 36.00 0.37 -0.19 16 2 C -0.02 -0.30 7.28 -35.74 -0.26 -0.56 16 3 C -0.16 -2.32 10.90 -37.46 -0.41 -2.73 16 4 C -0.23 -3.73 6.28 -103.27 -0.65 -4.38 16 5 C 0.60 10.73 7.84 -12.54 -0.10 10.63 16 6 O -0.55 -11.28 17.24 5.27 0.09 -11.19 16 7 N -0.61 -10.04 3.33 -171.81 -0.57 -10.61 16 8 C 0.06 0.97 4.76 -3.06 -0.01 0.95 16 9 C 0.18 3.16 3.09 -66.09 -0.20 2.96 16 10 H 0.07 1.27 7.98 -51.93 -0.41 0.86 16 11 N -0.71 -15.95 5.15 -51.65 -0.27 -16.22 16 12 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 13 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 14 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 15 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 16 Si 0.91 21.07 29.55 -169.99 -5.02 16.04 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.12 -1.77 3.27 -88.48 -0.29 -2.06 16 21 H 0.08 1.38 8.01 -51.93 -0.42 0.97 16 22 C -0.13 -1.82 9.31 37.16 0.35 -1.48 16 23 C 0.12 1.74 6.37 -2.54 -0.02 1.72 16 24 C 0.02 0.26 10.64 30.08 0.32 0.58 16 25 O -0.17 -2.45 10.52 7.65 0.08 -2.37 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 30 H 0.06 0.96 7.05 -51.93 -0.37 0.60 16 31 H 0.08 1.35 6.77 -51.93 -0.35 1.00 16 32 H 0.39 9.43 7.76 -40.82 -0.32 9.12 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.05 0.67 8.07 -51.93 -0.42 0.26 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 38 H 0.07 0.93 7.98 -51.93 -0.41 0.52 16 39 H 0.23 3.10 4.46 -52.48 -0.23 2.87 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -30.64 326.79 -6.62 -37.26 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.43 Total: 9.10 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.14 Total: -1.32 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.11 Total: -52.44 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.17 Total: -13.57 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.64 -6.62 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054608359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.469 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds