Wall clock time and date at job start Tue Mar 31 2020 00:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34173 * 125.44015 * 2 1 4 4 C 1.47018 * 105.95602 * 180.12825 * 3 2 1 5 5 C 1.47385 * 127.19535 * 179.89433 * 4 3 2 6 6 O 1.21611 * 119.99609 * 359.70650 * 5 4 3 7 7 N 1.34778 * 119.99988 * 179.70803 * 5 4 3 8 8 C 1.47026 * 125.64928 * 0.03830 * 7 5 4 9 9 C 1.54320 * 107.27121 * 181.02163 * 8 7 5 10 10 H 1.08995 * 110.87464 * 263.76261 * 9 8 7 11 11 N 1.46499 * 110.71836 * 140.55726 * 9 8 7 12 12 C 1.36931 * 120.00122 * 91.48076 * 11 9 8 13 13 H 1.08002 * 120.00098 * 0.02562 * 12 11 9 14 14 C 1.38812 * 120.00429 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99535 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00187 * 180.27849 * 14 12 11 17 17 H 1.48497 * 109.47173 * 179.72427 * 16 14 12 18 18 H 1.48506 * 109.46866 * 299.71963 * 16 14 12 19 19 H 1.48501 * 109.47438 * 59.72083 * 16 14 12 20 20 C 1.55166 * 102.94103 * 22.19626 * 9 8 7 21 21 H 1.08999 * 111.00276 * 82.60414 * 20 9 8 22 22 C 1.52997 * 111.00252 * 206.41962 * 20 9 8 23 23 C 1.47422 * 125.64825 * 180.02562 * 7 5 4 24 24 C 1.36420 * 105.61432 * 359.62909 * 4 3 2 25 25 O 1.33654 * 108.39584 * 0.22974 * 24 4 3 26 26 H 1.09002 * 109.47468 * 180.31334 * 1 2 3 27 27 H 1.09003 * 109.46651 * 300.31282 * 1 2 3 28 28 H 1.09001 * 109.47474 * 60.30682 * 1 2 3 29 29 H 1.07998 * 127.02454 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.87987 * 61.60805 * 8 7 5 31 31 H 1.08998 * 109.88499 * 300.44645 * 8 7 5 32 32 H 0.97001 * 119.99790 * 271.47593 * 11 9 8 33 33 H 0.97005 * 119.99717 * 180.02562 * 15 14 12 34 34 H 1.09006 * 109.46778 * 60.00432 * 22 20 9 35 35 H 1.09000 * 109.46875 * 179.97438 * 22 20 9 36 36 H 1.08993 * 109.47442 * 300.00051 * 22 20 9 37 37 H 1.09002 * 110.36688 * 37.06365 * 23 7 5 38 38 H 1.09005 * 110.36706 * 274.74814 * 23 7 5 39 39 H 1.08003 * 125.80128 * 180.21985 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 -0.0032 5 6 4.9025 1.4124 -0.0065 6 8 4.8320 2.6264 -0.0123 7 7 6.1068 0.8072 -0.0032 8 6 6.3361 -0.6450 0.0029 9 6 7.8628 -0.8677 0.0311 10 1 8.2496 -1.0346 -0.9742 11 7 8.2070 -1.9885 0.9095 12 6 8.3055 -3.2546 0.3974 13 1 8.1300 -3.4269 -0.6542 14 6 8.6311 -4.3167 1.2298 15 7 8.8455 -4.1066 2.5113 16 14 8.7731 -6.0426 0.5296 17 1 9.1350 -6.9890 1.6153 18 1 7.4726 -6.4445 -0.0642 19 1 9.8245 -6.0666 -0.5188 20 6 8.3983 0.4684 0.6105 21 1 8.3384 0.4741 1.6988 22 6 9.8300 0.7348 0.1415 23 6 7.4124 1.4919 -0.0055 24 6 3.5789 -0.7583 0.0037 25 8 2.2851 -1.0936 0.0054 26 1 -0.3634 -1.0276 0.0056 27 1 -0.3633 0.5187 0.8872 28 1 -0.3634 0.5091 -0.8927 29 1 1.9596 2.1229 0.0004 30 1 5.9130 -1.0908 -0.8974 31 1 5.8802 -1.0886 0.8880 32 1 8.3651 -1.8336 1.8539 33 1 9.0734 -4.8487 3.0930 34 1 9.8509 0.7926 -0.9469 35 1 10.1804 1.6775 0.5617 36 1 10.4783 -0.0754 0.4749 37 1 7.3693 2.3929 0.6065 38 1 7.7097 1.7386 -1.0248 39 1 4.4102 -1.4478 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054608359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:06 Heat of formation + Delta-G solvation = -24.028673 kcal Electronic energy + Delta-G solvation = -21670.011506 eV Core-core repulsion = 18385.925292 eV Total energy + Delta-G solvation = -3284.086214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.62015 -41.05484 -38.90186 -35.88206 -34.41979 -33.93348 -32.90520 -32.30574 -29.28718 -28.24494 -27.00030 -26.00130 -24.44521 -22.73830 -21.83295 -21.41026 -20.44785 -19.09569 -18.05379 -17.66255 -17.43792 -17.13707 -16.64383 -16.28245 -15.61211 -15.35681 -15.05498 -14.59531 -14.40014 -14.14838 -14.00711 -13.83389 -13.79199 -13.73256 -13.37842 -13.01046 -12.87519 -12.79884 -12.66963 -12.23148 -12.15586 -12.02770 -11.69250 -11.47819 -11.21743 -10.90845 -10.88278 -9.75444 -9.59379 -9.05908 -7.92636 -5.22815 0.26141 0.98528 1.52916 1.53637 1.59675 1.72989 1.99355 2.21311 2.58527 3.32148 3.38551 3.61019 3.68671 3.79718 3.83490 3.92167 4.20311 4.29352 4.32958 4.43015 4.48548 4.56904 4.67315 4.72593 4.74058 4.81194 4.84583 4.85883 5.02564 5.09325 5.11148 5.23948 5.32573 5.40065 5.48902 5.57277 5.97647 6.27031 6.38107 7.00862 7.35771 8.06153 8.30496 9.29879 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.005280 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.672721 B = 5302.150204 C = 6930.897063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.010 4.010 3 C -0.188 4.188 4 C -0.256 4.256 5 C 0.595 3.405 6 O -0.584 6.584 7 N -0.607 5.607 8 C 0.070 3.930 9 C 0.173 3.827 10 H 0.078 0.922 11 N -0.720 5.720 12 C -0.243 4.243 13 H 0.083 0.917 14 C -0.066 4.066 15 N -0.967 5.967 16 Si 0.967 3.033 17 H -0.302 1.302 18 H -0.277 1.277 19 H -0.279 1.279 20 C -0.105 4.105 21 H 0.071 0.929 22 C -0.127 4.127 23 C 0.117 3.883 24 C 0.020 3.980 25 O -0.179 6.179 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.164 0.836 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 8.512 -6.692 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.208 4.208 4 C -0.260 4.260 5 C 0.387 3.613 6 O -0.466 6.466 7 N -0.339 5.339 8 C -0.055 4.055 9 C 0.063 3.937 10 H 0.096 0.904 11 N -0.358 5.358 12 C -0.374 4.374 13 H 0.101 0.899 14 C -0.259 4.259 15 N -0.617 5.617 16 Si 0.796 3.204 17 H -0.228 1.228 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.125 4.125 21 H 0.089 0.911 22 C -0.185 4.185 23 C -0.005 4.005 24 C -0.050 4.050 25 O -0.075 6.075 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.181 0.819 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.468 8.724 -6.815 15.939 hybrid contribution 0.527 -0.852 0.440 1.094 sum -10.941 7.872 -6.375 14.910 Atomic orbital electron populations 1.20560 0.81391 1.05402 1.05411 1.23120 0.95865 0.82759 1.04080 1.22595 0.89416 1.00554 1.08195 1.21496 0.94650 0.93898 1.15993 1.17200 0.82058 0.86302 0.75769 1.90707 1.87297 1.14839 1.53772 1.48357 1.05403 1.08568 1.71606 1.23405 1.01599 0.79131 1.01379 1.21426 0.90025 0.87119 0.95177 0.90403 1.42473 1.82384 1.03068 1.07905 1.19606 1.38604 0.85150 0.94069 0.89879 1.25472 1.03020 1.01557 0.95848 1.69805 1.55704 1.31574 1.04569 0.85322 0.78145 0.80207 0.76724 1.22827 1.20277 1.20469 1.22570 0.95871 0.93966 1.00109 0.91087 1.21557 0.93406 1.01747 1.01752 1.22361 0.80681 0.95671 1.01790 1.25587 0.84609 0.95845 0.98963 1.83807 1.16620 1.36202 1.70854 0.89343 0.87894 0.87653 0.81858 0.90281 0.91551 0.79214 0.94092 0.91312 0.91061 0.93272 0.90765 0.89668 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.40 71.24 0.74 -0.16 16 2 C -0.01 -0.22 7.28 24.76 0.18 -0.04 16 3 C -0.19 -5.12 10.90 23.65 0.26 -4.87 16 4 C -0.26 -8.11 6.28 -18.99 -0.12 -8.23 16 5 C 0.60 21.12 7.84 86.65 0.68 21.80 16 6 O -0.58 -23.81 17.24 -4.07 -0.07 -23.88 16 7 N -0.61 -19.52 3.33 -815.75 -2.71 -22.23 16 8 C 0.07 2.24 4.76 86.73 0.41 2.65 16 9 C 0.17 5.98 3.09 46.18 0.14 6.12 16 10 H 0.08 2.62 7.98 -2.39 -0.02 2.60 16 11 N -0.72 -32.25 5.15 -317.33 -1.63 -33.88 16 12 C -0.24 -12.09 9.96 84.03 0.84 -11.26 16 13 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 14 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 15 N -0.97 -55.87 13.06 21.65 0.28 -55.58 16 16 Si 0.97 43.25 29.55 68.60 2.03 45.28 16 17 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 C -0.11 -3.13 3.27 -9.41 -0.03 -3.16 16 21 H 0.07 2.32 8.01 -2.39 -0.02 2.30 16 22 C -0.13 -3.27 9.31 71.98 0.67 -2.60 16 23 C 0.12 3.35 6.37 86.85 0.55 3.90 16 24 C 0.02 0.57 10.64 67.40 0.72 1.28 16 25 O -0.18 -4.81 10.52 4.44 0.05 -4.76 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.08 2.28 7.05 -2.39 -0.02 2.27 16 31 H 0.07 2.30 6.77 -2.39 -0.02 2.28 16 32 H 0.38 18.59 7.76 -92.71 -0.72 17.87 16 33 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 34 H 0.07 1.56 8.07 -2.38 -0.02 1.54 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 2.16 8.04 -2.39 -0.02 2.14 16 38 H 0.09 2.17 7.98 -2.38 -0.02 2.15 16 39 H 0.23 6.15 4.46 -2.91 -0.01 6.14 16 Total: -1.00 -65.72 326.79 3.79 -61.93 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.35 Total: 30.74 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.51 Total: 2.40 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.06 Total: -111.70 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.02 Total: -28.64 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.72 3.79 -61.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054608359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.902 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds