Wall clock time and date at job start Tue Mar 31 2020 00:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34183 * 125.43857 * 2 1 4 4 C 1.47021 * 105.95532 * 180.12372 * 3 2 1 5 5 C 1.47382 * 127.19373 * 179.89238 * 4 3 2 6 6 O 1.21615 * 119.99696 * 359.70079 * 5 4 3 7 7 N 1.34777 * 120.00149 * 179.70262 * 5 4 3 8 8 C 1.47420 * 125.64868 * 180.02562 * 7 5 4 9 9 C 1.55389 * 104.87384 * 204.09802 * 8 7 5 10 10 H 1.08998 * 111.02084 * 80.98333 * 9 8 7 11 11 C 1.52995 * 111.18729 * 204.98240 * 9 8 7 12 12 C 1.55156 * 101.36698 * 323.01637 * 9 8 7 13 13 H 1.09000 * 110.71858 * 153.94593 * 12 9 8 14 14 N 1.46496 * 110.72015 * 277.04608 * 12 9 8 15 15 C 1.36945 * 119.99718 * 202.55872 * 14 12 9 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47030 * 125.64728 * 359.97438 * 7 5 4 24 24 C 1.36422 * 105.61590 * 359.62213 * 4 3 2 25 25 O 1.33659 * 108.39473 * 0.23254 * 24 4 3 26 26 H 1.09004 * 109.46819 * 180.32006 * 1 2 3 27 27 H 1.08996 * 109.47533 * 300.32025 * 1 2 3 28 28 H 1.09004 * 109.46857 * 60.32823 * 1 2 3 29 29 H 1.07996 * 127.01956 * 0.02562 * 3 2 1 30 30 H 1.08999 * 110.36540 * 322.93198 * 8 7 5 31 31 H 1.09003 * 110.36314 * 85.14363 * 8 7 5 32 32 H 1.09000 * 109.47547 * 172.04406 * 11 9 8 33 33 H 1.09007 * 109.47082 * 292.03648 * 11 9 8 34 34 H 1.08992 * 109.47793 * 52.03555 * 11 9 8 35 35 H 0.96996 * 120.00499 * 22.55602 * 14 12 9 36 36 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.88120 * 59.55765 * 23 7 5 38 38 H 1.08997 * 109.88097 * 298.39452 * 23 7 5 39 39 H 1.07995 * 125.80370 * 180.22589 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 -0.0031 5 6 4.9025 1.4125 -0.0064 6 8 4.8319 2.6266 -0.0124 7 7 6.1068 0.8075 -0.0029 8 6 7.4124 1.4922 -0.0051 9 6 8.4028 0.4607 -0.6130 10 1 8.3429 0.4556 -1.7014 11 6 9.8350 0.7276 -0.1460 12 6 7.8630 -0.8677 -0.0202 13 1 8.1195 -1.7094 -0.6634 14 7 8.3781 -1.0775 1.3351 15 6 8.4244 -2.3407 1.8620 16 1 8.0808 -3.1820 1.2786 17 6 8.9130 -2.5396 3.1459 18 7 9.3312 -1.5141 3.8572 19 14 8.9755 -4.2625 3.8649 20 1 9.5346 -4.2053 5.2394 21 1 7.6039 -4.8297 3.9111 22 1 9.8384 -5.1223 3.0156 23 6 6.3361 -0.6448 0.0048 24 6 3.5790 -0.7582 0.0041 25 8 2.2852 -1.0935 0.0057 26 1 -0.3633 -1.0277 0.0057 27 1 -0.3634 0.5188 0.8870 28 1 -0.3633 0.5087 -0.8930 29 1 1.9595 2.1230 0.0004 30 1 7.3700 2.3877 -0.6251 31 1 7.7074 1.7495 1.0122 32 1 10.4811 -0.0880 -0.4708 33 1 10.1888 1.6646 -0.5762 34 1 9.8557 0.7965 0.9416 35 1 8.6864 -0.3218 1.8593 36 1 9.6723 -1.6531 4.7546 37 1 5.8812 -1.0966 -0.8767 38 1 5.9122 -1.0822 0.9087 39 1 4.4103 -1.4476 0.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054608361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:29 Heat of formation + Delta-G solvation = -0.870647 kcal Electronic energy + Delta-G solvation = -21851.981790 eV Core-core repulsion = 18568.899783 eV Total energy + Delta-G solvation = -3283.082007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.51171 -39.64828 -37.46969 -34.02160 -33.09627 -32.74368 -31.60713 -30.50909 -27.89853 -27.17958 -25.83417 -24.13703 -23.23616 -21.67412 -20.73518 -19.32259 -19.19393 -17.54012 -16.76700 -16.31556 -16.18985 -15.70865 -15.12468 -14.65000 -14.29504 -13.76574 -13.72176 -13.28814 -13.20147 -13.14997 -12.96703 -12.70877 -12.58008 -12.16576 -12.02378 -11.79325 -11.55406 -11.16199 -10.95532 -10.78865 -10.49646 -10.32440 -9.99216 -9.77180 -9.70435 -9.65985 -9.05534 -8.55615 -8.28748 -7.12405 -5.88260 -3.19093 1.48007 2.06292 2.84689 3.28727 3.37041 3.42019 3.43431 3.59941 4.48562 4.54603 4.68805 4.89636 4.99207 5.11038 5.20730 5.26834 5.31438 5.42130 5.46003 5.52954 5.59321 5.70938 5.76755 5.85233 5.94062 6.02277 6.12760 6.18401 6.29874 6.31519 6.35988 6.46741 6.62464 6.68093 6.90405 7.04628 7.58222 7.84414 8.29222 8.46338 9.41313 9.95397 10.30114 11.33549 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.005299 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.352251 B = 5283.019642 C = 6571.571582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.024 4.024 3 C -0.164 4.164 4 C -0.226 4.226 5 C 0.597 3.403 6 O -0.552 6.552 7 N -0.602 5.602 8 C 0.116 3.884 9 C -0.114 4.114 10 H 0.079 0.921 11 C -0.130 4.130 12 C 0.173 3.827 13 H 0.074 0.926 14 N -0.711 5.711 15 C -0.252 4.252 16 H 0.072 0.928 17 C -0.006 4.006 18 N -0.928 5.928 19 Si 0.907 3.093 20 H -0.291 1.291 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.058 3.942 24 C 0.013 3.987 25 O -0.175 6.175 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 2.132 -10.093 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.231 4.231 5 C 0.388 3.612 6 O -0.432 6.432 7 N -0.334 5.334 8 C -0.006 4.006 9 C -0.134 4.134 10 H 0.098 0.902 11 C -0.188 4.188 12 C 0.060 3.940 13 H 0.091 0.909 14 N -0.352 5.352 15 C -0.382 4.382 16 H 0.090 0.910 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.068 4.068 24 C -0.056 4.056 25 O -0.071 6.071 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.174 0.826 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.223 0.777 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.392 2.342 -10.004 15.341 hybrid contribution 0.239 -0.606 0.750 0.994 sum -11.153 1.736 -9.253 14.595 Atomic orbital electron populations 1.20293 0.84899 1.03988 1.03587 1.22283 0.94112 0.83881 1.06972 1.22421 0.90044 0.99542 1.06324 1.21440 0.94444 0.93314 1.13875 1.16890 0.81336 0.86522 0.76499 1.90739 1.86812 1.13592 1.52086 1.48228 1.05093 1.08312 1.71814 1.22354 0.81441 0.95490 1.01283 1.22715 0.95317 0.95869 0.99510 0.90241 1.21530 0.94162 1.00419 1.02667 1.21202 0.88593 0.94981 0.89201 0.90861 1.42448 1.74293 1.07331 1.11086 1.19178 1.36334 0.85383 0.97340 0.90991 1.24752 1.01238 0.97258 0.97009 1.69647 1.47635 1.28983 1.11206 0.86280 0.77710 0.83950 0.78272 1.21679 1.21200 1.21146 1.23618 1.02633 0.80011 1.00556 1.25489 0.83958 0.96315 0.99881 1.83762 1.16751 1.35427 1.71171 0.90518 0.89674 0.89735 0.82599 0.91128 0.91084 0.92050 0.93643 0.91165 0.77677 0.93253 0.92363 0.90037 0.75971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.40 36.00 0.37 -0.18 16 2 C -0.02 -0.30 7.28 -35.74 -0.26 -0.56 16 3 C -0.16 -2.35 10.90 -37.45 -0.41 -2.76 16 4 C -0.23 -3.71 6.28 -103.27 -0.65 -4.36 16 5 C 0.60 11.21 7.84 -12.54 -0.10 11.11 16 6 O -0.55 -11.87 17.24 5.26 0.09 -11.78 16 7 N -0.60 -10.51 3.33 -171.49 -0.57 -11.08 16 8 C 0.12 1.95 6.37 -2.27 -0.01 1.94 16 9 C -0.11 -1.75 3.53 -88.21 -0.31 -2.06 16 10 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.13 -2.00 8.86 37.15 0.33 -1.67 16 12 C 0.17 3.04 3.36 -66.10 -0.22 2.82 16 13 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 14 N -0.71 -16.03 4.55 -51.66 -0.24 -16.26 16 15 C -0.25 -6.38 9.97 -15.06 -0.15 -6.53 16 16 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 18 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 19 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.06 0.94 4.75 -3.06 -0.01 0.93 16 24 C 0.01 0.19 10.64 30.08 0.32 0.51 16 25 O -0.18 -2.41 10.52 7.63 0.08 -2.33 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 31 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.26 6.44 -51.93 -0.33 0.93 16 35 H 0.39 9.50 6.21 -40.82 -0.25 9.24 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.06 0.78 6.89 -51.93 -0.36 0.43 16 38 H 0.08 1.46 6.95 -51.93 -0.36 1.10 16 39 H 0.22 2.83 4.46 -52.49 -0.23 2.60 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -31.44 323.40 -6.56 -38.00 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.30 Total: 9.34 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.20 Total: -1.06 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.08 Total: -53.30 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.17 Total: -14.11 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.44 -6.56 -38.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054608361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.125 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds