Wall clock time and date at job start Tue Mar 31 2020 00:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34183 * 125.43857 * 2 1 4 4 C 1.47021 * 105.95532 * 180.12372 * 3 2 1 5 5 C 1.47382 * 127.19373 * 179.89238 * 4 3 2 6 6 O 1.21615 * 119.99696 * 359.70079 * 5 4 3 7 7 N 1.34777 * 120.00149 * 179.70262 * 5 4 3 8 8 C 1.47420 * 125.64868 * 180.02562 * 7 5 4 9 9 C 1.55389 * 104.87384 * 204.09802 * 8 7 5 10 10 H 1.08998 * 111.02084 * 80.98333 * 9 8 7 11 11 C 1.52995 * 111.18729 * 204.98240 * 9 8 7 12 12 C 1.55156 * 101.36698 * 323.01637 * 9 8 7 13 13 H 1.09000 * 110.71858 * 153.94593 * 12 9 8 14 14 N 1.46496 * 110.72015 * 277.04608 * 12 9 8 15 15 C 1.36945 * 119.99718 * 202.55872 * 14 12 9 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47030 * 125.64728 * 359.97438 * 7 5 4 24 24 C 1.36422 * 105.61590 * 359.62213 * 4 3 2 25 25 O 1.33659 * 108.39473 * 0.23254 * 24 4 3 26 26 H 1.09004 * 109.46819 * 180.32006 * 1 2 3 27 27 H 1.08996 * 109.47533 * 300.32025 * 1 2 3 28 28 H 1.09004 * 109.46857 * 60.32823 * 1 2 3 29 29 H 1.07996 * 127.01956 * 0.02562 * 3 2 1 30 30 H 1.08999 * 110.36540 * 322.93198 * 8 7 5 31 31 H 1.09003 * 110.36314 * 85.14363 * 8 7 5 32 32 H 1.09000 * 109.47547 * 172.04406 * 11 9 8 33 33 H 1.09007 * 109.47082 * 292.03648 * 11 9 8 34 34 H 1.08992 * 109.47793 * 52.03555 * 11 9 8 35 35 H 0.96996 * 120.00499 * 22.55602 * 14 12 9 36 36 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.88120 * 59.55765 * 23 7 5 38 38 H 1.08997 * 109.88097 * 298.39452 * 23 7 5 39 39 H 1.07995 * 125.80370 * 180.22589 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 -0.0031 5 6 4.9025 1.4125 -0.0064 6 8 4.8319 2.6266 -0.0124 7 7 6.1068 0.8075 -0.0029 8 6 7.4124 1.4922 -0.0051 9 6 8.4028 0.4607 -0.6130 10 1 8.3429 0.4556 -1.7014 11 6 9.8350 0.7276 -0.1460 12 6 7.8630 -0.8677 -0.0202 13 1 8.1195 -1.7094 -0.6634 14 7 8.3781 -1.0775 1.3351 15 6 8.4244 -2.3407 1.8620 16 1 8.0808 -3.1820 1.2786 17 6 8.9130 -2.5396 3.1459 18 7 9.3312 -1.5141 3.8572 19 14 8.9755 -4.2625 3.8649 20 1 9.5346 -4.2053 5.2394 21 1 7.6039 -4.8297 3.9111 22 1 9.8384 -5.1223 3.0156 23 6 6.3361 -0.6448 0.0048 24 6 3.5790 -0.7582 0.0041 25 8 2.2852 -1.0935 0.0057 26 1 -0.3633 -1.0277 0.0057 27 1 -0.3634 0.5188 0.8870 28 1 -0.3633 0.5087 -0.8930 29 1 1.9595 2.1230 0.0004 30 1 7.3700 2.3877 -0.6251 31 1 7.7074 1.7495 1.0122 32 1 10.4811 -0.0880 -0.4708 33 1 10.1888 1.6646 -0.5762 34 1 9.8557 0.7965 0.9416 35 1 8.6864 -0.3218 1.8593 36 1 9.6723 -1.6531 4.7546 37 1 5.8812 -1.0966 -0.8767 38 1 5.9122 -1.0822 0.9087 39 1 4.4103 -1.4476 0.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054608361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:25 Heat of formation + Delta-G solvation = -20.998477 kcal Electronic energy + Delta-G solvation = -21852.854598 eV Core-core repulsion = 18568.899783 eV Total energy + Delta-G solvation = -3283.954815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 6.52 seconds Orbital eigenvalues (eV) -43.60152 -41.05578 -38.95019 -35.74038 -34.37033 -33.91870 -32.83269 -32.10732 -29.46222 -28.24647 -26.98806 -25.87611 -24.68905 -22.97007 -21.85587 -20.73450 -20.44815 -19.35105 -17.97835 -17.53719 -17.43269 -17.11204 -16.44289 -16.39257 -15.79341 -15.39338 -15.00405 -14.61425 -14.39053 -14.13114 -14.01604 -13.81668 -13.77390 -13.47826 -13.36140 -13.06449 -12.88209 -12.75507 -12.65927 -12.32609 -12.17360 -11.97323 -11.46390 -11.41166 -11.20471 -10.92014 -10.87303 -9.73319 -9.57860 -9.00876 -7.90620 -5.19277 0.28539 0.99241 1.52001 1.53134 1.58956 1.75547 2.02199 2.24043 2.59199 3.36056 3.40471 3.61943 3.69012 3.85960 3.87650 3.94194 4.07871 4.34061 4.38400 4.46802 4.54856 4.62641 4.67421 4.73537 4.74411 4.82786 4.85304 4.93313 4.99044 5.05329 5.18372 5.26139 5.32013 5.40029 5.55799 5.60948 5.98110 6.30089 6.44501 7.03385 7.38185 8.11945 8.34526 9.32478 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.005299 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.352251 B = 5283.019642 C = 6571.571582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.008 4.008 3 C -0.192 4.192 4 C -0.257 4.257 5 C 0.591 3.409 6 O -0.591 6.591 7 N -0.603 5.603 8 C 0.114 3.886 9 C -0.098 4.098 10 H 0.112 0.888 11 C -0.124 4.124 12 C 0.164 3.836 13 H 0.091 0.909 14 N -0.723 5.723 15 C -0.237 4.237 16 H 0.087 0.913 17 C -0.072 4.072 18 N -0.970 5.970 19 Si 0.967 3.033 20 H -0.305 1.305 21 H -0.279 1.279 22 H -0.276 1.276 23 C 0.065 3.935 24 C 0.024 3.976 25 O -0.176 6.176 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.159 0.841 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.374 0.626 36 H 0.248 0.752 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 0.677 -12.043 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.056 4.056 3 C -0.211 4.211 4 C -0.262 4.262 5 C 0.383 3.617 6 O -0.474 6.474 7 N -0.334 5.334 8 C -0.008 4.008 9 C -0.118 4.118 10 H 0.130 0.870 11 C -0.182 4.182 12 C 0.053 3.947 13 H 0.109 0.891 14 N -0.362 5.362 15 C -0.368 4.368 16 H 0.105 0.895 17 C -0.264 4.264 18 N -0.620 5.620 19 Si 0.797 3.203 20 H -0.232 1.232 21 H -0.205 1.205 22 H -0.202 1.202 23 C -0.060 4.060 24 C -0.046 4.046 25 O -0.072 6.072 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.177 0.823 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.208 0.792 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -12.931 0.851 -12.014 17.671 hybrid contribution 0.641 -0.121 1.271 1.429 sum -12.291 0.730 -10.743 16.340 Atomic orbital electron populations 1.20553 0.81386 1.05487 1.05309 1.23068 0.95809 0.82714 1.04045 1.22591 0.89627 1.00546 1.08367 1.21469 0.94343 0.94231 1.16111 1.17297 0.82232 0.86364 0.75825 1.90702 1.87402 1.15203 1.54071 1.48315 1.05025 1.08869 1.71173 1.22369 0.81758 0.96442 1.00247 1.22685 0.94468 0.93633 1.00990 0.86972 1.21458 0.94400 1.01742 1.00609 1.21495 0.89237 0.96854 0.87094 0.89097 1.42622 1.74644 1.06056 1.12885 1.19646 1.33401 0.86786 0.97012 0.89514 1.25477 1.02651 1.00237 0.98026 1.69816 1.50212 1.30856 1.11145 0.85312 0.77801 0.80423 0.76800 1.23183 1.20494 1.20222 1.23510 1.01509 0.79423 1.01525 1.25623 0.84665 0.95617 0.98687 1.83798 1.16567 1.35960 1.70874 0.89098 0.88157 0.87668 0.82296 0.90454 0.93518 0.92125 0.91142 0.94417 0.79216 0.94329 0.88542 0.91729 0.74647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.40 71.23 0.74 -0.13 16 2 C -0.01 -0.18 7.28 24.76 0.18 0.00 16 3 C -0.19 -5.36 10.90 23.65 0.26 -5.10 16 4 C -0.26 -8.27 6.28 -18.99 -0.12 -8.39 16 5 C 0.59 22.23 7.84 86.65 0.68 22.91 16 6 O -0.59 -25.93 17.24 -4.08 -0.07 -26.00 16 7 N -0.60 -20.65 3.33 -814.73 -2.71 -23.36 16 8 C 0.11 3.79 6.37 87.03 0.55 4.34 16 9 C -0.10 -2.82 3.53 -9.23 -0.03 -2.85 16 10 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 11 C -0.12 -3.70 8.86 71.98 0.64 -3.07 16 12 C 0.16 5.45 3.36 46.18 0.16 5.60 16 13 H 0.09 2.77 8.11 -2.39 -0.02 2.75 16 14 N -0.72 -32.38 4.55 -317.34 -1.45 -33.83 16 15 C -0.24 -11.82 9.97 84.03 0.84 -10.98 16 16 H 0.09 4.00 7.83 -2.91 -0.02 3.97 16 17 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 18 N -0.97 -57.32 13.06 21.65 0.28 -57.04 16 19 Si 0.97 43.89 29.55 68.60 2.03 45.91 16 20 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.07 2.00 4.75 86.73 0.41 2.41 16 24 C 0.02 0.64 10.64 67.40 0.72 1.36 16 25 O -0.18 -4.45 10.52 4.39 0.05 -4.40 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 30 H 0.08 2.46 8.04 -2.39 -0.02 2.44 16 31 H 0.05 1.77 8.00 -2.39 -0.02 1.75 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.04 1.37 6.44 -2.39 -0.02 1.36 16 35 H 0.37 18.80 6.21 -92.71 -0.58 18.23 16 36 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.10 2.26 6.89 -2.39 -0.02 2.24 16 38 H 0.06 2.24 6.95 -2.39 -0.02 2.22 16 39 H 0.24 5.45 4.46 -2.91 -0.01 5.44 16 Total: -1.00 -69.48 323.40 4.11 -65.37 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.49 Total: 30.64 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.49 Total: 2.71 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -3.87 Total: -114.23 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.02 Total: -30.41 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -69.48 4.11 -65.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054608361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.371 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.52 seconds