Wall clock time and date at job start Tue Mar 31 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35132 * 126.44505 * 2 1 4 4 O 1.33936 * 108.76793 * 180.02562 * 3 2 1 5 5 C 1.34913 * 109.38395 * 0.02562 * 4 3 2 6 6 C 1.46657 * 125.98719 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00097 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99719 * 0.03020 * 6 5 4 9 9 C 1.47025 * 125.64502 * 179.97438 * 8 6 5 10 10 C 1.54327 * 107.27105 * 178.97339 * 9 8 6 11 11 H 1.08999 * 110.72110 * 96.34588 * 10 9 8 12 12 C 1.52997 * 110.72340 * 219.44464 * 10 9 8 13 13 C 1.55163 * 102.94086 * 337.81105 * 10 9 8 14 14 H 1.08999 * 111.00142 * 277.42342 * 13 10 9 15 15 N 1.46496 * 111.00314 * 153.57666 * 13 10 9 16 16 C 1.36939 * 120.00136 * 154.99808 * 15 13 10 17 17 H 1.07996 * 119.99922 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00396 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00349 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47105 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47572 * 119.99759 * 20 18 16 23 23 H 1.48501 * 109.47119 * 240.00033 * 20 18 16 24 24 C 1.47421 * 125.65319 * 0.03907 * 8 6 5 25 25 C 1.36539 * 108.02584 * 0.26395 * 5 4 3 26 26 H 1.08994 * 109.47151 * 90.02030 * 1 2 3 27 27 H 1.08998 * 109.47423 * 210.02336 * 1 2 3 28 28 H 1.09002 * 109.46877 * 330.02109 * 1 2 3 29 29 H 1.07993 * 125.61198 * 0.03941 * 3 2 1 30 30 H 1.08999 * 109.88484 * 59.56157 * 9 8 6 31 31 H 1.08998 * 110.01061 * 298.46090 * 9 8 6 32 32 H 1.09002 * 109.47153 * 58.54532 * 12 10 9 33 33 H 1.09001 * 109.46832 * 298.54723 * 12 10 9 34 34 H 1.09004 * 109.47261 * 178.54704 * 12 10 9 35 35 H 0.97003 * 120.00082 * 334.99363 * 15 13 10 36 36 H 0.97005 * 119.99963 * 180.02562 * 19 18 16 37 37 H 1.09007 * 110.36440 * 322.93039 * 24 8 6 38 38 H 1.08996 * 110.37385 * 85.14226 * 24 8 6 39 39 H 1.08000 * 126.65055 * 179.69697 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6803 -0.0006 5 6 3.6260 -0.6682 -0.0015 6 6 4.8378 -1.4942 -0.0029 7 8 4.7470 -2.7078 -0.0041 8 7 6.0520 -0.9093 -0.0027 9 6 7.3425 -1.6138 -0.0034 10 6 8.4507 -0.5401 -0.0293 11 1 8.8149 -0.3375 0.9779 12 6 9.6005 -0.9707 -0.9422 13 6 7.7208 0.6986 -0.6127 14 1 7.6830 0.6531 -1.7010 15 7 8.3536 1.9410 -0.1629 16 6 8.2323 3.0812 -0.9116 17 1 7.6705 3.0644 -1.8338 18 6 8.8314 4.2585 -0.4853 19 7 9.5157 4.2791 0.6389 20 14 8.6654 5.8140 -1.5062 21 1 7.8523 5.5280 -2.7154 22 1 7.9991 6.8673 -0.6989 23 1 10.0134 6.2831 -1.9163 24 6 6.3063 0.5428 -0.0003 25 6 2.3408 -1.1292 -0.0075 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 1.9770 2.1144 0.0006 30 1 7.4189 -2.2466 -0.8876 31 1 7.4361 -2.2216 0.8965 32 1 9.2208 -1.1391 -1.9499 33 1 10.0413 -1.8919 -0.5613 34 1 10.3585 -0.1877 -0.9656 35 1 8.8584 1.9560 0.6652 36 1 9.9341 5.1019 0.9370 37 1 5.5681 1.0582 -0.6150 38 1 6.2872 0.9298 1.0184 39 1 2.0266 -2.1624 -0.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054982405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:55 Heat of formation + Delta-G solvation = -9.955680 kcal Electronic energy + Delta-G solvation = -21706.271126 eV Core-core repulsion = 18422.795163 eV Total energy + Delta-G solvation = -3283.475963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.67660 -39.66364 -37.58599 -34.40144 -34.01689 -32.54013 -30.80741 -30.45799 -27.66570 -27.54960 -26.21956 -24.09997 -22.92629 -21.32102 -20.92620 -19.94039 -19.16751 -17.35305 -17.17052 -16.44780 -16.40155 -15.76948 -15.31709 -14.51177 -14.04874 -13.69307 -13.61703 -13.31855 -13.26542 -13.06497 -12.97762 -12.80226 -12.67876 -12.61769 -11.96286 -11.72514 -11.64939 -11.13451 -11.04942 -10.75258 -10.64191 -10.24719 -10.15700 -9.97588 -9.77210 -9.73489 -9.05099 -8.70033 -8.33628 -7.11583 -5.87944 -3.18607 1.12882 2.27853 2.72791 3.25648 3.29083 3.37008 3.43586 3.45245 4.45267 4.57095 4.70918 4.87846 4.94109 5.11883 5.19671 5.23857 5.44623 5.51779 5.55329 5.62163 5.68294 5.74559 5.81643 5.85718 5.87001 5.94247 6.00226 6.20051 6.23246 6.35001 6.41331 6.44273 6.49638 6.60074 6.83834 6.93399 7.60842 7.64613 8.16558 8.29519 9.41655 9.94672 10.30010 11.34049 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.005298 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.699060 B = 5284.001995 C = 6900.614683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.200 4.200 3 C -0.010 4.010 4 O -0.148 6.148 5 C -0.064 4.064 6 C 0.610 3.390 7 O -0.537 6.537 8 N -0.602 5.602 9 C 0.117 3.883 10 C -0.116 4.116 11 H 0.085 0.915 12 C -0.133 4.133 13 C 0.178 3.822 14 H 0.069 0.931 15 N -0.708 5.708 16 C -0.247 4.247 17 H 0.073 0.927 18 C -0.007 4.007 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.071 3.929 25 C -0.126 4.126 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.207 0.793 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.026 -8.938 -1.022 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.201 4.201 3 C -0.081 4.081 4 O -0.043 6.043 5 C -0.117 4.117 6 C 0.398 3.602 7 O -0.417 6.417 8 N -0.334 5.334 9 C -0.006 4.006 10 C -0.136 4.136 11 H 0.103 0.897 12 C -0.191 4.191 13 C 0.065 3.935 14 H 0.087 0.913 15 N -0.348 5.348 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.055 4.055 25 C -0.147 4.147 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.224 0.776 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.222 0.778 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.842 -9.257 -1.150 15.075 hybrid contribution -0.181 1.023 -0.118 1.045 sum -12.023 -8.235 -1.268 14.628 Atomic orbital electron populations 1.20148 0.88819 1.02659 1.02141 1.20440 0.97537 0.92419 1.09725 1.24285 0.80399 1.00081 1.03298 1.84307 1.28689 1.21530 1.69760 1.22008 0.95852 0.80768 1.13023 1.16251 0.80498 0.85880 0.77573 1.90839 1.85826 1.12220 1.52813 1.48416 1.04805 1.09708 1.70432 1.22046 0.81617 0.95099 1.01828 1.22552 0.94609 0.95321 1.01070 0.89652 1.21655 0.97903 1.00945 0.98581 1.21378 0.88709 0.86304 0.97077 0.91258 1.42295 1.60705 1.04604 1.27171 1.19294 1.27849 0.87452 1.03210 0.90921 1.24752 1.00134 0.98017 0.97488 1.69669 1.38516 1.27142 1.22311 0.86127 0.77311 0.83480 0.79297 1.20459 1.21776 1.21763 1.23702 1.01717 0.77657 1.02380 1.21753 0.90485 1.00339 1.02094 0.91439 0.91469 0.91540 0.77631 0.91256 0.91595 0.92835 0.93172 0.91315 0.77829 0.93379 0.90312 0.91059 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.39 36.00 0.37 -0.28 16 2 C -0.20 -2.31 6.14 -104.93 -0.64 -2.95 16 3 C -0.01 -0.12 12.00 29.63 0.36 0.23 16 4 O -0.15 -2.27 7.86 4.99 0.04 -2.23 16 5 C -0.06 -1.02 6.93 -36.80 -0.25 -1.28 16 6 C 0.61 10.71 7.82 -12.86 -0.10 10.61 16 7 O -0.54 -10.38 17.19 5.19 0.09 -10.29 16 8 N -0.60 -10.21 3.33 -172.06 -0.57 -10.78 16 9 C 0.12 1.78 6.46 -3.06 -0.02 1.76 16 10 C -0.12 -1.82 3.19 -88.78 -0.28 -2.10 16 11 H 0.09 1.37 8.01 -51.93 -0.42 0.96 16 12 C -0.13 -1.88 9.13 37.16 0.34 -1.54 16 13 C 0.18 3.36 3.16 -65.77 -0.21 3.15 16 14 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16 15 N -0.71 -16.54 5.24 -51.34 -0.27 -16.81 16 16 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16 20 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.07 1.27 5.86 -2.52 -0.01 1.26 16 25 C -0.13 -1.73 10.57 -39.39 -0.42 -2.14 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.21 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.39 9.63 7.77 -40.82 -0.32 9.32 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.08 1.45 6.22 -51.93 -0.32 1.13 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -30.49 329.85 -6.81 -37.30 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.65 Total: 7.65 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.12 Total: -0.20 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.12 Total: -53.68 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.13 Total: -12.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.49 -6.81 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054982405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.340 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds