Wall clock time and date at job start Tue Mar 31 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35132 * 126.44505 * 2 1 4 4 O 1.33936 * 108.76793 * 180.02562 * 3 2 1 5 5 C 1.34913 * 109.38395 * 0.02562 * 4 3 2 6 6 C 1.46657 * 125.98719 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00097 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99719 * 0.03020 * 6 5 4 9 9 C 1.47025 * 125.64502 * 179.97438 * 8 6 5 10 10 C 1.54327 * 107.27105 * 178.97339 * 9 8 6 11 11 H 1.08999 * 110.72110 * 96.34588 * 10 9 8 12 12 C 1.52997 * 110.72340 * 219.44464 * 10 9 8 13 13 C 1.55163 * 102.94086 * 337.81105 * 10 9 8 14 14 H 1.08999 * 111.00142 * 277.42342 * 13 10 9 15 15 N 1.46496 * 111.00314 * 153.57666 * 13 10 9 16 16 C 1.36939 * 120.00136 * 154.99808 * 15 13 10 17 17 H 1.07996 * 119.99922 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00396 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00349 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47105 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47572 * 119.99759 * 20 18 16 23 23 H 1.48501 * 109.47119 * 240.00033 * 20 18 16 24 24 C 1.47421 * 125.65319 * 0.03907 * 8 6 5 25 25 C 1.36539 * 108.02584 * 0.26395 * 5 4 3 26 26 H 1.08994 * 109.47151 * 90.02030 * 1 2 3 27 27 H 1.08998 * 109.47423 * 210.02336 * 1 2 3 28 28 H 1.09002 * 109.46877 * 330.02109 * 1 2 3 29 29 H 1.07993 * 125.61198 * 0.03941 * 3 2 1 30 30 H 1.08999 * 109.88484 * 59.56157 * 9 8 6 31 31 H 1.08998 * 110.01061 * 298.46090 * 9 8 6 32 32 H 1.09002 * 109.47153 * 58.54532 * 12 10 9 33 33 H 1.09001 * 109.46832 * 298.54723 * 12 10 9 34 34 H 1.09004 * 109.47261 * 178.54704 * 12 10 9 35 35 H 0.97003 * 120.00082 * 334.99363 * 15 13 10 36 36 H 0.97005 * 119.99963 * 180.02562 * 19 18 16 37 37 H 1.09007 * 110.36440 * 322.93039 * 24 8 6 38 38 H 1.08996 * 110.37385 * 85.14226 * 24 8 6 39 39 H 1.08000 * 126.65055 * 179.69697 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6803 -0.0006 5 6 3.6260 -0.6682 -0.0015 6 6 4.8378 -1.4942 -0.0029 7 8 4.7470 -2.7078 -0.0041 8 7 6.0520 -0.9093 -0.0027 9 6 7.3425 -1.6138 -0.0034 10 6 8.4507 -0.5401 -0.0293 11 1 8.8149 -0.3375 0.9779 12 6 9.6005 -0.9707 -0.9422 13 6 7.7208 0.6986 -0.6127 14 1 7.6830 0.6531 -1.7010 15 7 8.3536 1.9410 -0.1629 16 6 8.2323 3.0812 -0.9116 17 1 7.6705 3.0644 -1.8338 18 6 8.8314 4.2585 -0.4853 19 7 9.5157 4.2791 0.6389 20 14 8.6654 5.8140 -1.5062 21 1 7.8523 5.5280 -2.7154 22 1 7.9991 6.8673 -0.6989 23 1 10.0134 6.2831 -1.9163 24 6 6.3063 0.5428 -0.0003 25 6 2.3408 -1.1292 -0.0075 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 1.9770 2.1144 0.0006 30 1 7.4189 -2.2466 -0.8876 31 1 7.4361 -2.2216 0.8965 32 1 9.2208 -1.1391 -1.9499 33 1 10.0413 -1.8919 -0.5613 34 1 10.3585 -0.1877 -0.9656 35 1 8.8584 1.9560 0.6652 36 1 9.9341 5.1019 0.9370 37 1 5.5681 1.0582 -0.6150 38 1 6.2872 0.9298 1.0184 39 1 2.0266 -2.1624 -0.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054982405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:53 Heat of formation + Delta-G solvation = -28.917284 kcal Electronic energy + Delta-G solvation = -21707.093363 eV Core-core repulsion = 18422.795163 eV Total energy + Delta-G solvation = -3284.298200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.73022 -41.03456 -39.01989 -35.95479 -35.20486 -33.98875 -32.56445 -31.53757 -29.22636 -28.52423 -27.32047 -25.92794 -24.23220 -22.70598 -22.02896 -21.36073 -20.35447 -19.16339 -18.45320 -17.67645 -17.63738 -17.09287 -16.69871 -16.16675 -15.51542 -15.38289 -14.66483 -14.62052 -14.45302 -14.30766 -14.16613 -13.95248 -13.92284 -13.52976 -13.28542 -13.07383 -12.89057 -12.87085 -12.54447 -12.23232 -12.12968 -12.02523 -11.72605 -11.54458 -11.39643 -10.95966 -10.74251 -9.92645 -9.51845 -9.05794 -7.94839 -5.24826 -0.01553 1.31637 1.49576 1.50592 1.58116 1.60342 2.01468 2.06399 2.56714 3.29480 3.37077 3.69497 3.77168 3.82027 3.91064 4.02214 4.15014 4.29188 4.32604 4.43513 4.57018 4.61089 4.65779 4.82578 4.85723 4.88668 4.90531 5.04832 5.07224 5.09055 5.12139 5.15004 5.31906 5.44480 5.52294 5.54464 5.89283 6.24665 6.27976 6.83421 7.33923 8.03468 8.29085 9.28111 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.005298 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.699060 B = 5284.001995 C = 6900.614683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.201 4.201 3 C -0.007 4.007 4 O -0.170 6.170 5 C -0.104 4.104 6 C 0.608 3.392 7 O -0.561 6.561 8 N -0.604 5.604 9 C 0.117 3.883 10 C -0.104 4.104 11 H 0.081 0.919 12 C -0.128 4.128 13 C 0.173 3.827 14 H 0.066 0.934 15 N -0.717 5.717 16 C -0.242 4.242 17 H 0.077 0.923 18 C -0.066 4.066 19 N -0.965 5.965 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.295 1.295 24 C 0.089 3.911 25 C -0.119 4.119 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.243 0.757 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 -9.144 -1.771 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.202 4.202 3 C -0.076 4.076 4 O -0.065 6.065 5 C -0.156 4.156 6 C 0.398 3.602 7 O -0.443 6.443 8 N -0.335 5.335 9 C -0.004 4.004 10 C -0.124 4.124 11 H 0.100 0.900 12 C -0.185 4.185 13 C 0.062 3.938 14 H 0.084 0.916 15 N -0.356 5.356 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.259 4.259 19 N -0.615 5.615 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.222 1.222 24 C -0.037 4.037 25 C -0.139 4.139 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.259 0.741 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.543 -9.504 -1.926 16.656 hybrid contribution 0.219 1.032 0.111 1.060 sum -13.324 -8.472 -1.815 15.894 Atomic orbital electron populations 1.20257 0.86092 1.03967 1.03255 1.20846 0.99272 0.91277 1.08790 1.25133 0.79241 1.01870 1.01357 1.84266 1.30575 1.21234 1.70438 1.21834 0.95861 0.81292 1.16583 1.16482 0.80982 0.85872 0.76896 1.90807 1.86266 1.13130 1.54138 1.48418 1.05440 1.09148 1.70514 1.22129 0.80555 0.94861 1.02902 1.22455 0.95150 0.93815 1.01000 0.90037 1.21614 0.96710 1.01468 0.98720 1.21508 0.89377 0.85943 0.96966 0.91561 1.42371 1.61112 1.05482 1.26636 1.19626 1.26393 0.88289 1.03089 0.90510 1.25474 1.00774 1.00881 0.98729 1.69810 1.40183 1.27471 1.24086 0.85157 0.76938 0.79910 0.78241 1.19052 1.22146 1.22220 1.23290 1.00751 0.78452 1.01222 1.22065 0.90181 1.01470 1.00234 0.90320 0.90808 0.89672 0.74130 0.90133 0.90562 0.92147 0.90494 0.93167 0.78976 0.93962 0.90805 0.92469 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.39 71.23 0.74 -0.28 16 2 C -0.20 -4.17 6.14 -20.06 -0.12 -4.30 16 3 C -0.01 -0.14 12.00 67.10 0.81 0.66 16 4 O -0.17 -5.07 7.86 -5.07 -0.04 -5.11 16 5 C -0.10 -3.28 6.93 24.07 0.17 -3.11 16 6 C 0.61 21.33 7.82 86.44 0.68 22.01 16 7 O -0.56 -21.62 17.19 -4.34 -0.07 -21.69 16 8 N -0.60 -20.35 3.33 -816.48 -2.72 -23.06 16 9 C 0.12 3.45 6.46 86.73 0.56 4.02 16 10 C -0.10 -3.21 3.19 -9.60 -0.03 -3.24 16 11 H 0.08 2.60 8.01 -2.39 -0.02 2.58 16 12 C -0.13 -3.44 9.13 71.98 0.66 -2.78 16 13 C 0.17 6.52 3.16 46.39 0.15 6.66 16 14 H 0.07 2.55 7.99 -2.39 -0.02 2.53 16 15 N -0.72 -33.87 5.24 -316.36 -1.66 -35.53 16 16 C -0.24 -12.69 9.96 84.03 0.84 -11.86 16 17 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 18 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 19 N -0.97 -56.63 13.06 21.65 0.28 -56.35 16 20 Si 0.97 44.28 29.55 68.60 2.03 46.30 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 C 0.09 3.20 5.86 86.86 0.51 3.71 16 25 C -0.12 -3.12 10.57 22.39 0.24 -2.88 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.24 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.08 2.21 7.82 -2.39 -0.02 2.19 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.53 16 35 H 0.38 19.19 7.77 -92.71 -0.72 18.47 16 36 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 37 H 0.07 2.74 6.22 -2.38 -0.01 2.72 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -65.74 329.85 3.80 -61.94 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.33 Total: 28.02 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.65 Total: 5.48 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -4.09 Total: -114.94 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.11 Total: -26.81 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.74 3.80 -61.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054982405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.022 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds