Wall clock time and date at job start Tue Mar 31 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35133 * 126.44096 * 2 1 4 4 O 1.33931 * 108.76548 * 180.02562 * 3 2 1 5 5 C 1.34912 * 109.38332 * 359.97438 * 4 3 2 6 6 C 1.46663 * 125.98856 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00077 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99473 * 0.02890 * 6 5 4 9 9 C 1.47419 * 125.65166 * 0.02562 * 8 6 5 10 10 C 1.54907 * 104.83402 * 155.84022 * 9 8 6 11 11 H 1.08992 * 111.00631 * 278.90379 * 10 9 8 12 12 N 1.46499 * 111.00532 * 155.08480 * 10 9 8 13 13 C 1.36931 * 120.00122 * 86.45669 * 12 10 9 14 14 H 1.08002 * 120.00098 * 0.02562 * 13 12 10 15 15 C 1.38812 * 120.00429 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.27849 * 15 13 12 18 18 H 1.48497 * 109.47173 * 179.72427 * 17 15 13 19 19 H 1.48506 * 109.46866 * 299.71963 * 17 15 13 20 20 H 1.48501 * 109.47438 * 59.72083 * 17 15 13 21 21 C 1.55159 * 101.58096 * 37.01167 * 10 9 8 22 22 H 1.09007 * 110.71956 * 82.85816 * 21 10 9 23 23 C 1.52994 * 110.72348 * 206.13295 * 21 10 9 24 24 C 1.47026 * 125.64401 * 179.97438 * 8 6 5 25 25 C 1.36545 * 108.02984 * 0.22850 * 5 4 3 26 26 H 1.09003 * 109.46789 * 89.97695 * 1 2 3 27 27 H 1.09002 * 109.47171 * 209.97636 * 1 2 3 28 28 H 1.09000 * 109.47105 * 329.97898 * 1 2 3 29 29 H 1.07994 * 125.61502 * 0.02562 * 3 2 1 30 30 H 1.09000 * 110.36706 * 37.00423 * 9 8 6 31 31 H 1.09000 * 110.46338 * 274.73064 * 9 8 6 32 32 H 0.97001 * 119.99790 * 266.45186 * 12 10 9 33 33 H 0.97005 * 119.99717 * 180.02562 * 16 15 13 34 34 H 1.09009 * 109.47032 * 60.00346 * 23 21 10 35 35 H 1.09001 * 109.47365 * 179.97438 * 23 21 10 36 36 H 1.08991 * 109.47236 * 300.00158 * 23 21 10 37 37 H 1.08993 * 109.87924 * 300.50542 * 24 8 6 38 38 H 1.08999 * 109.88221 * 61.51527 * 24 8 6 39 39 H 1.07995 * 126.64803 * 179.77570 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8379 -1.4941 -0.0014 7 8 4.7471 -2.7076 -0.0015 8 7 6.0521 -0.9091 -0.0020 9 6 6.3063 0.5430 -0.0013 10 6 7.7210 0.6977 0.6105 11 1 7.6833 0.6508 1.6987 12 7 8.3536 1.9409 0.1628 13 6 8.1261 3.1080 0.8419 14 1 7.4806 3.1119 1.7078 15 6 8.7251 4.2862 0.4175 16 7 9.5121 4.2813 -0.6374 17 14 8.4209 5.8767 1.3486 18 1 9.1748 6.9807 0.7021 19 1 6.9696 6.1912 1.3302 20 1 8.8762 5.7227 2.7537 21 6 8.4507 -0.5399 0.0246 22 1 8.8125 -0.3332 -0.9827 23 6 9.6008 -0.9721 0.9364 24 6 7.3426 -1.6136 -0.0025 25 6 2.3408 -1.1292 -0.0048 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 1.9770 2.1145 0.0004 30 1 5.5684 1.0569 0.6147 31 1 6.2881 0.9335 -1.0188 32 1 8.9337 1.9373 -0.6146 33 1 9.9310 5.1045 -0.9338 34 1 9.2078 -1.2283 1.9203 35 1 10.0982 -1.8416 0.5066 36 1 10.3154 -0.1548 1.0321 37 1 7.4190 -2.2478 0.8807 38 1 7.4333 -2.2205 -0.9034 39 1 2.0267 -2.1624 -0.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054982407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:03 Heat of formation + Delta-G solvation = -9.563667 kcal Electronic energy + Delta-G solvation = -21723.475361 eV Core-core repulsion = 18440.016397 eV Total energy + Delta-G solvation = -3283.458964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.67181 -39.66523 -37.59004 -34.39524 -34.00980 -32.54841 -30.80194 -30.45467 -27.65927 -27.53203 -26.22190 -24.11847 -22.92578 -21.30766 -20.91834 -19.93912 -19.16829 -17.31231 -17.16797 -16.44367 -16.39747 -15.78723 -15.30671 -14.51262 -14.06246 -13.68275 -13.61079 -13.31475 -13.26338 -13.07392 -12.99829 -12.79014 -12.66942 -12.62340 -11.96073 -11.72000 -11.67357 -11.13393 -11.02628 -10.74965 -10.64816 -10.29717 -10.15878 -9.94608 -9.76202 -9.73001 -9.03893 -8.69548 -8.33174 -7.11141 -5.87014 -3.17796 1.13353 2.28316 2.73314 3.26088 3.29332 3.38272 3.43517 3.44000 4.45823 4.57370 4.71378 4.88057 4.93634 5.11061 5.19054 5.23956 5.44967 5.51041 5.55513 5.62535 5.68704 5.74916 5.79919 5.86186 5.87670 5.94145 5.99880 6.20138 6.23795 6.35451 6.40651 6.43503 6.49964 6.59245 6.85195 6.93945 7.60570 7.64750 8.16819 8.30524 9.42473 9.95528 10.30960 11.34882 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.005423 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.596989 B = 5162.029575 C = 6843.700946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.200 4.200 3 C -0.010 4.010 4 O -0.148 6.148 5 C -0.064 4.064 6 C 0.610 3.390 7 O -0.537 6.537 8 N -0.602 5.602 9 C 0.072 3.928 10 C 0.178 3.822 11 H 0.066 0.934 12 N -0.709 5.709 13 C -0.248 4.248 14 H 0.071 0.929 15 C -0.007 4.007 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.290 1.290 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.114 4.114 22 H 0.086 0.914 23 C -0.134 4.134 24 C 0.117 3.883 25 C -0.126 4.126 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.207 0.793 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 -8.963 1.010 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.201 4.201 3 C -0.080 4.080 4 O -0.043 6.043 5 C -0.117 4.117 6 C 0.398 3.602 7 O -0.417 6.417 8 N -0.334 5.334 9 C -0.054 4.054 10 C 0.065 3.935 11 H 0.084 0.916 12 N -0.349 5.349 13 C -0.379 4.379 14 H 0.089 0.911 15 C -0.203 4.203 16 N -0.577 5.577 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.133 4.133 22 H 0.104 0.896 23 C -0.192 4.192 24 C -0.006 4.006 25 C -0.147 4.147 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.224 0.776 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.222 0.778 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.674 -9.275 1.118 14.952 hybrid contribution -0.253 1.037 0.102 1.072 sum -11.927 -8.238 1.220 14.547 Atomic orbital electron populations 1.20151 0.88820 1.02658 1.02133 1.20440 0.97536 0.92417 1.09744 1.24287 0.80401 1.00083 1.03279 1.84308 1.28685 1.21522 1.69736 1.22011 0.95849 0.80776 1.13034 1.16251 0.80497 0.85876 0.77565 1.90836 1.85827 1.12224 1.52818 1.48429 1.04798 1.09717 1.70443 1.23689 1.01647 0.77604 1.02438 1.21370 0.88853 0.86316 0.96954 0.91642 1.42275 1.55220 1.02646 1.34777 1.19185 1.24308 0.85968 1.08427 0.91057 1.24749 0.99619 0.97934 0.98035 1.69651 1.34710 1.27238 1.26098 0.86268 0.77581 0.83207 0.79107 1.21632 1.21181 1.21137 1.22499 0.94611 0.95155 1.01060 0.89570 1.21668 0.97784 1.01194 0.98537 1.22051 0.81603 0.95043 1.01856 1.21751 0.90482 1.00333 1.02102 0.91449 0.91469 0.91539 0.77633 0.90336 0.90982 0.77806 0.93282 0.92831 0.93093 0.91247 0.91239 0.91569 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.39 36.01 0.37 -0.28 16 2 C -0.20 -2.32 6.14 -104.92 -0.64 -2.97 16 3 C -0.01 -0.12 12.00 29.63 0.36 0.23 16 4 O -0.15 -2.28 7.86 5.00 0.04 -2.24 16 5 C -0.06 -1.03 6.93 -36.79 -0.25 -1.28 16 6 C 0.61 10.75 7.82 -12.86 -0.10 10.65 16 7 O -0.54 -10.39 17.19 5.20 0.09 -10.30 16 8 N -0.60 -10.25 3.33 -172.07 -0.57 -10.82 16 9 C 0.07 1.30 5.86 -2.53 -0.01 1.28 16 10 C 0.18 3.36 3.13 -65.78 -0.21 3.15 16 11 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 12 N -0.71 -16.60 5.28 -51.35 -0.27 -16.87 16 13 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 17 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.11 -1.78 3.17 -88.79 -0.28 -2.06 16 22 H 0.09 1.38 8.00 -51.93 -0.42 0.97 16 23 C -0.13 -1.88 9.16 37.15 0.34 -1.54 16 24 C 0.12 1.78 6.46 -3.06 -0.02 1.76 16 25 C -0.13 -1.73 10.57 -39.39 -0.42 -2.15 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.21 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.08 1.46 6.22 -51.93 -0.32 1.14 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.39 9.64 7.71 -40.82 -0.31 9.33 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.05 0.71 8.06 -51.92 -0.42 0.29 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -30.48 329.74 -6.80 -37.28 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.64 Total: 7.76 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.11 Total: -0.15 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.12 Total: -53.81 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.13 Total: -12.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.48 -6.80 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054982407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.718 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds