Wall clock time and date at job start Tue Mar 31 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35133 * 126.44096 * 2 1 4 4 O 1.33931 * 108.76548 * 180.02562 * 3 2 1 5 5 C 1.34912 * 109.38332 * 359.97438 * 4 3 2 6 6 C 1.46663 * 125.98856 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00077 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99473 * 0.02890 * 6 5 4 9 9 C 1.47419 * 125.65166 * 0.02562 * 8 6 5 10 10 C 1.54907 * 104.83402 * 155.84022 * 9 8 6 11 11 H 1.08992 * 111.00631 * 278.90379 * 10 9 8 12 12 N 1.46499 * 111.00532 * 155.08480 * 10 9 8 13 13 C 1.36931 * 120.00122 * 86.45669 * 12 10 9 14 14 H 1.08002 * 120.00098 * 0.02562 * 13 12 10 15 15 C 1.38812 * 120.00429 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.27849 * 15 13 12 18 18 H 1.48497 * 109.47173 * 179.72427 * 17 15 13 19 19 H 1.48506 * 109.46866 * 299.71963 * 17 15 13 20 20 H 1.48501 * 109.47438 * 59.72083 * 17 15 13 21 21 C 1.55159 * 101.58096 * 37.01167 * 10 9 8 22 22 H 1.09007 * 110.71956 * 82.85816 * 21 10 9 23 23 C 1.52994 * 110.72348 * 206.13295 * 21 10 9 24 24 C 1.47026 * 125.64401 * 179.97438 * 8 6 5 25 25 C 1.36545 * 108.02984 * 0.22850 * 5 4 3 26 26 H 1.09003 * 109.46789 * 89.97695 * 1 2 3 27 27 H 1.09002 * 109.47171 * 209.97636 * 1 2 3 28 28 H 1.09000 * 109.47105 * 329.97898 * 1 2 3 29 29 H 1.07994 * 125.61502 * 0.02562 * 3 2 1 30 30 H 1.09000 * 110.36706 * 37.00423 * 9 8 6 31 31 H 1.09000 * 110.46338 * 274.73064 * 9 8 6 32 32 H 0.97001 * 119.99790 * 266.45186 * 12 10 9 33 33 H 0.97005 * 119.99717 * 180.02562 * 16 15 13 34 34 H 1.09009 * 109.47032 * 60.00346 * 23 21 10 35 35 H 1.09001 * 109.47365 * 179.97438 * 23 21 10 36 36 H 1.08991 * 109.47236 * 300.00158 * 23 21 10 37 37 H 1.08993 * 109.87924 * 300.50542 * 24 8 6 38 38 H 1.08999 * 109.88221 * 61.51527 * 24 8 6 39 39 H 1.07995 * 126.64803 * 179.77570 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8379 -1.4941 -0.0014 7 8 4.7471 -2.7076 -0.0015 8 7 6.0521 -0.9091 -0.0020 9 6 6.3063 0.5430 -0.0013 10 6 7.7210 0.6977 0.6105 11 1 7.6833 0.6508 1.6987 12 7 8.3536 1.9409 0.1628 13 6 8.1261 3.1080 0.8419 14 1 7.4806 3.1119 1.7078 15 6 8.7251 4.2862 0.4175 16 7 9.5121 4.2813 -0.6374 17 14 8.4209 5.8767 1.3486 18 1 9.1748 6.9807 0.7021 19 1 6.9696 6.1912 1.3302 20 1 8.8762 5.7227 2.7537 21 6 8.4507 -0.5399 0.0246 22 1 8.8125 -0.3332 -0.9827 23 6 9.6008 -0.9721 0.9364 24 6 7.3426 -1.6136 -0.0025 25 6 2.3408 -1.1292 -0.0048 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 1.9770 2.1145 0.0004 30 1 5.5684 1.0569 0.6147 31 1 6.2881 0.9335 -1.0188 32 1 8.9337 1.9373 -0.6146 33 1 9.9310 5.1045 -0.9338 34 1 9.2078 -1.2283 1.9203 35 1 10.0982 -1.8416 0.5066 36 1 10.3154 -0.1548 1.0321 37 1 7.4190 -2.2478 0.8807 38 1 7.4333 -2.2205 -0.9034 39 1 2.0267 -2.1624 -0.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054982407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:02 Heat of formation + Delta-G solvation = -28.536794 kcal Electronic energy + Delta-G solvation = -21724.298098 eV Core-core repulsion = 18440.016397 eV Total energy + Delta-G solvation = -3284.281701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.73244 -41.03947 -39.02607 -35.94879 -35.20636 -33.99589 -32.56305 -31.53922 -29.20788 -28.52568 -27.32258 -25.94828 -24.23271 -22.69516 -22.02960 -21.36377 -20.36169 -19.11757 -18.46582 -17.67944 -17.63849 -17.10415 -16.69630 -16.17056 -15.52267 -15.36564 -14.68399 -14.62867 -14.48663 -14.29666 -14.15886 -13.97157 -13.90593 -13.53137 -13.27964 -13.09402 -12.88289 -12.81347 -12.54500 -12.25272 -12.19807 -12.02499 -11.72010 -11.53006 -11.37844 -10.94600 -10.74392 -9.92771 -9.51970 -9.05936 -7.94180 -5.24354 -0.01719 1.31439 1.50403 1.51904 1.57524 1.59193 2.01440 2.06148 2.57207 3.29189 3.37291 3.68776 3.75411 3.81715 3.91133 4.01943 4.14899 4.29098 4.32576 4.44023 4.56512 4.60625 4.65569 4.82202 4.85973 4.88508 4.90435 5.04740 5.07428 5.09136 5.11762 5.14458 5.31403 5.44588 5.52145 5.54217 5.89178 6.24915 6.27781 6.83241 7.34363 8.04050 8.29796 9.28347 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.005423 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.596989 B = 5162.029575 C = 6843.700946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.200 4.200 3 C -0.007 4.007 4 O -0.170 6.170 5 C -0.104 4.104 6 C 0.608 3.392 7 O -0.561 6.561 8 N -0.605 5.605 9 C 0.089 3.911 10 C 0.172 3.828 11 H 0.063 0.937 12 N -0.718 5.718 13 C -0.245 4.245 14 H 0.076 0.924 15 C -0.065 4.065 16 N -0.966 5.966 17 Si 0.968 3.032 18 H -0.297 1.297 19 H -0.277 1.277 20 H -0.279 1.279 21 C -0.102 4.102 22 H 0.082 0.918 23 C -0.128 4.128 24 C 0.118 3.882 25 C -0.118 4.118 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.242 0.758 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.378 0.622 33 H 0.252 0.748 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 -9.150 1.728 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.202 4.202 3 C -0.076 4.076 4 O -0.065 6.065 5 C -0.156 4.156 6 C 0.398 3.602 7 O -0.443 6.443 8 N -0.336 5.336 9 C -0.036 4.036 10 C 0.062 3.938 11 H 0.081 0.919 12 N -0.357 5.357 13 C -0.376 4.376 14 H 0.094 0.906 15 C -0.258 4.258 16 N -0.615 5.615 17 Si 0.798 3.202 18 H -0.224 1.224 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.122 4.122 22 H 0.100 0.900 23 C -0.186 4.186 24 C -0.004 4.004 25 C -0.139 4.139 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.258 0.742 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.211 0.789 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.408 -9.501 1.861 16.538 hybrid contribution 0.158 1.039 -0.116 1.058 sum -13.250 -8.461 1.744 15.817 Atomic orbital electron populations 1.20261 0.86078 1.03988 1.03239 1.20846 0.99276 0.91267 1.08777 1.25130 0.79252 1.01870 1.01384 1.84267 1.30575 1.21249 1.70426 1.21844 0.95879 0.81289 1.16585 1.16481 0.80978 0.85871 0.76894 1.90804 1.86261 1.13115 1.54130 1.48431 1.05458 1.09135 1.70526 1.23273 1.00722 0.78434 1.01197 1.21496 0.89521 0.85999 0.96822 0.91949 1.42356 1.55520 1.03499 1.34357 1.19532 1.23085 0.86913 1.08083 0.90600 1.25479 1.00215 1.00935 0.99175 1.69799 1.36351 1.27487 1.27891 0.85295 0.77553 0.79435 0.77965 1.22355 1.20351 1.20483 1.22414 0.95166 0.93617 1.00998 0.89952 1.21626 0.96714 1.01464 0.98789 1.22141 0.80522 0.94819 1.02948 1.22064 0.90165 1.01469 1.00230 0.90359 0.90768 0.89659 0.74165 0.90870 0.92515 0.78936 0.93951 0.91987 0.90465 0.93138 0.90086 0.90526 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.39 71.24 0.74 -0.29 16 2 C -0.20 -4.20 6.14 -20.06 -0.12 -4.32 16 3 C -0.01 -0.15 12.00 67.10 0.81 0.65 16 4 O -0.17 -5.12 7.86 -5.02 -0.04 -5.16 16 5 C -0.10 -3.31 6.93 24.08 0.17 -3.14 16 6 C 0.61 21.41 7.82 86.44 0.68 22.09 16 7 O -0.56 -21.64 17.19 -4.31 -0.07 -21.71 16 8 N -0.60 -20.45 3.33 -816.52 -2.72 -23.17 16 9 C 0.09 3.26 5.86 86.86 0.51 3.77 16 10 C 0.17 6.52 3.13 46.38 0.15 6.67 16 11 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 12 N -0.72 -34.02 5.28 -316.39 -1.67 -35.69 16 13 C -0.24 -12.85 9.98 84.03 0.84 -12.01 16 14 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 15 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 16 N -0.97 -56.67 13.06 21.65 0.28 -56.38 16 17 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 18 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 C -0.10 -3.14 3.17 -9.61 -0.03 -3.18 16 22 H 0.08 2.62 8.00 -2.38 -0.02 2.60 16 23 C -0.13 -3.43 9.16 71.98 0.66 -2.77 16 24 C 0.12 3.46 6.46 86.73 0.56 4.02 16 25 C -0.12 -3.13 10.57 22.39 0.24 -2.89 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.24 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.07 2.74 6.22 -2.39 -0.01 2.73 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.38 19.22 7.71 -92.71 -0.71 18.51 16 33 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 34 H 0.06 1.54 8.06 -2.38 -0.02 1.52 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 2.22 7.76 -2.39 -0.02 2.20 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -65.77 329.74 3.80 -61.97 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.34 Total: 28.36 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.65 Total: 5.50 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.10 Total: -115.23 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.11 Total: -26.87 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -65.77 3.80 -61.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054982407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.431 kcal (2) G-P(sol) polarization free energy of solvation -65.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds