Wall clock time and date at job start Tue Mar 31 2020 01:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.44137 * 2 1 4 4 O 1.33930 * 108.76967 * 179.75895 * 3 2 1 5 5 C 1.34913 * 109.38328 * 0.40710 * 4 3 2 6 6 C 1.46660 * 125.99032 * 179.86612 * 5 4 3 7 7 O 1.21692 * 119.99767 * 179.68657 * 6 5 4 8 8 N 1.34780 * 119.99510 * 359.68535 * 6 5 4 9 9 C 1.47743 * 125.81887 * 179.97438 * 8 6 5 10 10 C 1.54909 * 104.83995 * 155.82587 * 9 8 6 11 11 H 1.08994 * 111.00889 * 279.01887 * 10 9 8 12 12 C 1.53010 * 111.00288 * 155.16710 * 10 9 8 13 13 C 1.55159 * 101.57990 * 37.09908 * 10 9 8 14 14 H 1.09004 * 110.72010 * 206.13157 * 13 10 9 15 15 N 1.46501 * 110.72431 * 82.85828 * 13 10 9 16 16 C 1.36932 * 120.00386 * 160.02463 * 15 13 10 17 17 H 1.08009 * 119.99883 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00314 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99858 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00063 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47353 * 90.00141 * 20 18 16 22 22 H 1.48503 * 109.46903 * 210.00140 * 20 18 16 23 23 H 1.48505 * 109.47279 * 330.00003 * 20 18 16 24 24 C 1.47020 * 125.64983 * 0.02580 * 8 6 5 25 25 C 1.36543 * 108.02435 * 359.59742 * 5 4 3 26 26 H 1.08996 * 109.46702 * 269.99080 * 1 2 3 27 27 H 1.08993 * 109.47336 * 29.99917 * 1 2 3 28 28 H 1.09004 * 109.46754 * 149.99858 * 1 2 3 29 29 H 1.08002 * 125.61719 * 0.03455 * 3 2 1 30 30 H 1.09003 * 110.29227 * 37.02448 * 9 8 6 31 31 H 1.08996 * 110.53057 * 274.75660 * 9 8 6 32 32 H 1.08996 * 109.46861 * 307.81105 * 12 10 9 33 33 H 1.08998 * 109.46481 * 67.80518 * 12 10 9 34 34 H 1.09002 * 109.46945 * 187.80738 * 12 10 9 35 35 H 0.97003 * 119.99337 * 340.02145 * 15 13 10 36 36 H 0.96993 * 120.00018 * 179.97438 * 19 18 16 37 37 H 1.09002 * 109.88367 * 61.60808 * 24 8 6 38 38 H 1.09000 * 109.88319 * 300.59426 * 24 8 6 39 39 H 1.07997 * 126.64829 * 180.26404 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0053 5 6 3.6261 -0.6680 -0.0002 6 6 4.8380 -1.4940 0.0002 7 8 4.7472 -2.7075 0.0006 8 7 6.0522 -0.9089 0.0002 9 6 7.3512 -1.6129 0.0011 10 6 8.3510 -0.6013 -0.6126 11 1 8.2897 -0.6024 -1.7008 12 6 9.7793 -0.8900 -0.1457 13 6 7.8354 0.7402 -0.0277 14 1 8.1028 1.5728 -0.6784 15 7 8.3562 0.9500 1.3254 16 6 8.3761 2.2089 1.8638 17 1 8.0083 3.0473 1.2907 18 6 8.8691 2.4077 3.1462 19 7 9.3178 1.3862 3.8444 20 14 8.8957 4.1249 3.8808 21 1 7.6209 4.3754 4.6000 22 1 10.0310 4.2391 4.8313 23 1 9.0564 5.1254 2.7952 24 6 6.3055 0.5393 0.0002 25 6 2.3409 -1.1291 -0.0002 26 1 -0.3632 -0.0002 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.9770 2.1146 0.0005 30 1 7.2948 -2.5111 -0.6139 31 1 7.6466 -1.8686 1.0186 32 1 9.8003 -0.9521 0.9422 33 1 10.1159 -1.8358 -0.5702 34 1 10.4389 -0.0879 -0.4768 35 1 8.6868 0.1971 1.8400 36 1 9.6626 1.5251 4.7402 37 1 5.8894 0.9884 0.9020 38 1 5.8555 0.9944 -0.8820 39 1 2.0268 -2.1624 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054982408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:07 Heat of formation + Delta-G solvation = -6.240669 kcal Electronic energy + Delta-G solvation = -21911.598651 eV Core-core repulsion = 18628.283782 eV Total energy + Delta-G solvation = -3283.314868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.63791 -39.60721 -37.60060 -34.35843 -33.86107 -32.42270 -30.62205 -30.35564 -27.77760 -27.54410 -26.13513 -23.95909 -23.08362 -21.56932 -20.95346 -19.30253 -19.05649 -17.61495 -17.05509 -16.39065 -16.28595 -15.68032 -15.05109 -14.60494 -14.25788 -13.72837 -13.61662 -13.30736 -13.16707 -13.12108 -12.90360 -12.69823 -12.58335 -12.15534 -11.98139 -11.74728 -11.55648 -11.14662 -10.94167 -10.78455 -10.48198 -10.27541 -10.09022 -9.90817 -9.70236 -9.66198 -9.02685 -8.64628 -8.24477 -7.07797 -5.84686 -3.14668 1.17766 2.30904 2.78196 3.32659 3.38094 3.39026 3.44386 3.46076 4.52073 4.57545 4.73526 4.89203 4.97063 5.16253 5.27615 5.32491 5.46360 5.52055 5.58134 5.64885 5.70251 5.78052 5.87144 5.88573 5.95529 5.97173 6.17481 6.25815 6.32439 6.37215 6.39621 6.52844 6.55128 6.76665 6.90731 6.97424 7.63318 7.74980 8.25462 8.33373 9.45177 9.99503 10.34534 11.37537 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.005424 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.593803 B = 5161.346974 C = 6459.259803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.198 4.198 3 C -0.014 4.014 4 O -0.150 6.150 5 C -0.059 4.059 6 C 0.609 3.391 7 O -0.537 6.537 8 N -0.596 5.596 9 C 0.115 3.885 10 C -0.114 4.114 11 H 0.080 0.920 12 C -0.131 4.131 13 C 0.173 3.827 14 H 0.072 0.928 15 N -0.712 5.712 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.073 3.927 25 C -0.128 4.128 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.206 0.794 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 -2.178 -10.200 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.200 4.200 3 C -0.084 4.084 4 O -0.044 6.044 5 C -0.111 4.111 6 C 0.398 3.602 7 O -0.418 6.418 8 N -0.327 5.327 9 C -0.006 4.006 10 C -0.134 4.134 11 H 0.098 0.902 12 C -0.188 4.188 13 C 0.060 3.940 14 H 0.089 0.911 15 N -0.353 5.353 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.053 4.053 25 C -0.149 4.149 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.223 0.777 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.300 -2.471 -10.122 15.370 hybrid contribution -0.221 0.791 0.771 1.127 sum -11.520 -1.680 -9.351 14.933 Atomic orbital electron populations 1.20149 0.88847 1.02574 1.02188 1.20433 0.97513 0.92456 1.09562 1.24215 0.80378 0.99989 1.03857 1.84243 1.28743 1.21665 1.69781 1.22052 0.95932 0.80641 1.12524 1.16201 0.80502 0.85884 0.77653 1.90837 1.85763 1.12191 1.52988 1.48408 1.04876 1.09321 1.70064 1.22394 0.81381 0.95354 1.01521 1.22631 0.95257 0.95947 0.99577 0.90179 1.21546 0.94231 1.00396 1.02673 1.21216 0.88920 0.94678 0.89160 0.91058 1.42456 1.73447 1.07874 1.11509 1.19225 1.35236 0.85823 0.97421 0.90994 1.24741 1.01351 0.97296 0.97058 1.69652 1.47270 1.29101 1.11672 0.86202 0.77172 0.83920 0.78927 1.21731 1.21755 1.20672 1.23374 1.01425 0.78770 1.01719 1.21754 0.90512 1.00353 1.02296 0.91400 0.91603 0.91479 0.77707 0.90935 0.90765 0.91152 0.93579 0.91995 0.77722 0.93375 0.90093 0.92390 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.01 0.37 -0.30 16 2 C -0.20 -2.35 6.14 -104.93 -0.64 -2.99 16 3 C -0.01 -0.17 12.00 29.63 0.36 0.19 16 4 O -0.15 -2.30 8.27 5.00 0.04 -2.26 16 5 C -0.06 -0.98 6.95 -36.80 -0.26 -1.23 16 6 C 0.61 11.36 7.82 -12.86 -0.10 11.26 16 7 O -0.54 -11.04 17.14 5.20 0.09 -10.95 16 8 N -0.60 -10.75 3.34 -171.81 -0.57 -11.33 16 9 C 0.12 1.94 6.38 -2.35 -0.02 1.93 16 10 C -0.11 -1.79 3.51 -88.47 -0.31 -2.10 16 11 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 12 C -0.13 -2.03 8.85 37.16 0.33 -1.70 16 13 C 0.17 3.21 3.37 -66.09 -0.22 2.98 16 14 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 15 N -0.71 -16.61 4.61 -51.65 -0.24 -16.85 16 16 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 20 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.07 1.31 5.28 -3.07 -0.02 1.29 16 25 C -0.13 -1.84 10.57 -39.39 -0.42 -2.25 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.21 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 31 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 32 H 0.07 1.27 6.37 -51.93 -0.33 0.94 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.39 9.68 6.10 -40.82 -0.25 9.43 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 1.67 7.69 -51.93 -0.40 1.27 16 38 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 39 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -31.10 327.12 -6.78 -37.88 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.56 Total: 8.15 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.17 Total: 0.17 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.09 Total: -54.58 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.13 Total: -13.21 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.10 -6.78 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054982408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.635 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds