Wall clock time and date at job start Tue Mar 31 2020 00:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35132 * 125.61492 * 2 1 4 4 C 1.40364 * 107.11651 * 179.97438 * 3 2 1 5 5 C 1.36554 * 106.70355 * 359.97438 * 4 3 2 6 6 C 1.46651 * 125.98356 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00169 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99951 * 180.27449 * 6 5 4 9 9 C 1.46505 * 120.00095 * 179.72488 * 8 6 5 10 10 H 1.08991 * 110.88886 * 34.29930 * 9 8 6 11 11 C 1.54914 * 111.00244 * 270.41889 * 9 8 6 12 12 N 1.47469 * 104.81081 * 204.94943 * 11 9 8 13 13 C 1.36933 * 125.63102 * 204.07319 * 12 11 9 14 14 H 1.07998 * 120.00260 * 179.97438 * 13 12 11 15 15 C 1.38810 * 119.99957 * 359.97438 * 13 12 11 16 16 N 1.31622 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46786 * 89.99762 * 17 15 13 19 19 H 1.48500 * 109.47084 * 209.99892 * 17 15 13 20 20 H 1.48502 * 109.46661 * 330.00259 * 17 15 13 21 21 C 1.47023 * 108.72382 * 24.07334 * 12 11 9 22 22 C 1.54333 * 107.26871 * 358.97305 * 21 12 11 23 23 H 1.09004 * 110.86592 * 96.24358 * 22 21 12 24 24 C 1.53004 * 110.71891 * 219.44158 * 22 21 12 25 25 O 1.33929 * 125.61767 * 180.30536 * 2 1 3 26 26 H 1.09004 * 109.46899 * 90.00136 * 1 2 3 27 27 H 1.08997 * 109.47081 * 210.00128 * 1 2 3 28 28 H 1.09004 * 109.47604 * 330.00102 * 1 2 3 29 29 H 1.08006 * 126.44301 * 0.02562 * 3 2 1 30 30 H 1.07996 * 126.65119 * 179.97438 * 4 3 2 31 31 H 0.97000 * 120.00112 * 359.72923 * 8 6 5 32 32 H 1.08998 * 110.36983 * 323.75879 * 11 9 8 33 33 H 1.09000 * 110.36647 * 86.08132 * 11 9 8 34 34 H 0.96996 * 120.00005 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.88624 * 239.56326 * 21 12 11 36 36 H 1.09001 * 109.88522 * 118.38905 * 21 12 11 37 37 H 1.09005 * 109.46672 * 173.52302 * 24 22 21 38 38 H 1.08995 * 109.47298 * 293.52772 * 24 22 21 39 39 H 1.09003 * 109.46787 * 53.52559 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0006 5 6 3.5823 -0.7117 0.0015 6 6 4.7414 -1.6101 0.0029 7 8 5.8680 -1.1498 0.0038 8 7 4.5590 -2.9454 -0.0019 9 6 5.7169 -3.8429 -0.0065 10 1 6.5401 -3.4182 0.5679 11 6 6.1606 -4.1693 -1.4545 12 7 6.8524 -5.4677 -1.3532 13 6 7.7948 -5.9398 -2.2272 14 1 8.2452 -6.9078 -2.0648 15 6 8.1712 -5.1741 -3.3222 16 7 7.6220 -3.9945 -3.5205 17 14 9.4564 -5.8184 -4.5151 18 1 8.7876 -6.5865 -5.5958 19 1 10.1996 -4.6767 -5.1062 20 1 10.4034 -6.7042 -3.7914 21 6 6.3629 -6.1713 -0.1586 22 6 5.3332 -5.2484 0.5269 23 1 4.3180 -5.5103 0.2287 24 6 5.4810 -5.3088 2.0486 25 8 2.2870 -1.0887 -0.0058 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9612 2.1261 0.0004 30 1 4.5113 1.2703 0.0004 31 1 3.6610 -3.3122 -0.0023 32 1 5.2920 -4.2525 -2.1078 33 1 6.8423 -3.4033 -1.8241 34 1 7.8848 -3.4597 -4.2859 35 1 7.1921 -6.3702 0.5203 36 1 5.8860 -7.1074 -0.4491 37 1 4.8262 -4.5674 2.5069 38 1 5.2069 -6.3031 2.4011 39 1 6.5151 -5.0987 2.3219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079388999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:39 Heat of formation + Delta-G solvation = 1.842009 kcal Electronic energy + Delta-G solvation = -21677.094293 eV Core-core repulsion = 18394.129916 eV Total energy + Delta-G solvation = -3282.964377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69364 -39.34370 -37.46466 -34.05993 -33.30275 -32.59216 -32.01868 -30.34646 -28.37329 -26.79097 -25.59315 -23.76456 -22.22009 -21.59229 -20.36784 -20.07420 -19.61305 -17.94384 -16.90509 -16.45746 -15.89029 -15.46101 -14.92362 -14.26401 -14.22291 -13.75107 -13.42852 -13.32998 -13.18752 -12.99857 -12.89299 -12.86500 -12.48605 -12.24952 -12.06966 -11.70496 -11.21959 -11.07942 -10.77660 -10.66104 -10.37340 -10.04398 -9.96698 -9.92437 -9.76052 -9.69304 -8.65516 -8.62609 -8.36726 -6.81698 -5.60521 -3.04439 1.12649 2.31372 2.62399 3.41175 3.43840 3.47757 3.50606 3.51988 4.50450 4.53431 4.87087 4.87718 5.09564 5.16245 5.18640 5.31965 5.40491 5.45067 5.55702 5.64200 5.75328 5.79772 5.90940 5.97057 6.04719 6.16314 6.23626 6.34238 6.38498 6.47953 6.66940 6.74043 6.84309 6.96587 7.47320 7.64171 7.81309 7.93421 8.38481 8.45336 9.23959 9.85386 10.48525 11.42500 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.004431 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.022444 B = 6317.591680 C = 7081.773093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.008 3.992 3 C -0.223 4.223 4 C -0.125 4.125 5 C -0.067 4.067 6 C 0.598 3.402 7 O -0.513 6.513 8 N -0.701 5.701 9 C 0.118 3.882 10 H 0.094 0.906 11 C 0.149 3.851 12 N -0.603 5.603 13 C -0.227 4.227 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.918 5.918 17 Si 0.915 3.085 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.142 3.858 22 C -0.111 4.111 23 H 0.074 0.926 24 C -0.138 4.138 25 O -0.163 6.163 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.399 0.601 32 H 0.014 0.986 33 H 0.113 0.887 34 H 0.253 0.747 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 6.615 9.872 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 C -0.242 4.242 4 C -0.146 4.146 5 C -0.119 4.119 6 C 0.383 3.617 7 O -0.390 6.390 8 N -0.350 5.350 9 C 0.013 3.987 10 H 0.112 0.888 11 C 0.023 3.977 12 N -0.329 5.329 13 C -0.355 4.355 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.566 5.566 17 Si 0.745 3.255 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.016 3.984 22 C -0.131 4.131 23 H 0.093 0.907 24 C -0.195 4.195 25 O -0.059 6.059 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.171 0.829 30 H 0.177 0.823 31 H 0.233 0.767 32 H 0.032 0.968 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.979 6.660 9.676 18.259 hybrid contribution 0.135 -0.306 -0.747 0.818 sum -13.844 6.354 8.929 17.657 Atomic orbital electron populations 1.20376 0.84775 1.04242 1.03861 1.22757 0.94211 0.84254 1.03172 1.21557 0.92442 0.99630 1.10539 1.21938 0.98538 0.93073 1.01009 1.22308 0.81704 0.94867 1.13068 1.16517 0.85874 0.81774 0.77495 1.90914 1.21808 1.75934 1.50384 1.45796 1.10469 1.05214 1.73536 1.22801 0.86942 0.87449 1.01513 0.88763 1.22249 0.96495 0.90308 0.88677 1.44398 1.45974 1.16563 1.26006 1.19066 1.13249 1.01155 1.02074 0.90294 1.24826 1.00220 0.96775 0.98707 1.69801 1.45282 1.11394 1.30124 0.86068 0.80914 0.77522 0.80948 1.21654 1.21613 1.20640 1.21340 0.93802 0.93953 0.89345 1.22438 0.99857 0.95660 0.95137 0.90745 1.21751 1.01892 1.01010 0.94879 1.83999 1.16161 1.34921 1.70820 0.89697 0.90284 0.89146 0.82870 0.82256 0.76716 0.96795 0.86935 0.93628 0.95370 0.95814 0.93104 0.92793 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.41 36.01 0.37 -0.11 16 2 C 0.01 0.09 7.31 -35.41 -0.26 -0.17 16 3 C -0.22 -2.48 10.77 -39.89 -0.43 -2.91 16 4 C -0.13 -1.75 10.62 -39.39 -0.42 -2.17 16 5 C -0.07 -1.06 7.13 -36.80 -0.26 -1.32 16 6 C 0.60 11.14 7.79 -12.87 -0.10 11.04 16 7 O -0.51 -11.42 16.56 5.19 0.09 -11.33 16 8 N -0.70 -12.17 5.21 -53.04 -0.28 -12.44 16 9 C 0.12 2.36 2.82 -65.78 -0.19 2.17 16 10 H 0.09 2.05 7.54 -51.93 -0.39 1.66 16 11 C 0.15 3.77 5.58 -2.50 -0.01 3.76 16 12 N -0.60 -15.82 3.40 -170.03 -0.58 -16.40 16 13 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 14 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 16 N -0.92 -27.85 10.09 55.49 0.56 -27.29 16 17 Si 0.92 22.58 29.55 -169.99 -5.02 17.55 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.14 2.96 6.84 -3.06 -0.02 2.94 16 22 C -0.11 -1.91 3.19 -88.78 -0.28 -2.20 16 23 H 0.07 1.18 7.99 -51.93 -0.42 0.76 16 24 C -0.14 -1.93 9.16 37.16 0.34 -1.59 16 25 O -0.16 -2.23 10.40 5.02 0.05 -2.18 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 30 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.40 5.84 8.29 -40.82 -0.34 5.50 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 3.34 5.88 -51.93 -0.31 3.04 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.84 8.06 -51.93 -0.42 0.43 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -33.68 328.68 -7.36 -41.04 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.62 Total: 3.65 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.51 Total: 2.45 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.29 Total: -56.13 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.14 Total: -13.51 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.68 -7.36 -41.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079388999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.882 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds