Wall clock time and date at job start Tue Mar 31 2020 00:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35132 * 125.61492 * 2 1 4 4 C 1.40364 * 107.11651 * 179.97438 * 3 2 1 5 5 C 1.36554 * 106.70355 * 359.97438 * 4 3 2 6 6 C 1.46651 * 125.98356 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00169 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99951 * 180.27449 * 6 5 4 9 9 C 1.46505 * 120.00095 * 179.72488 * 8 6 5 10 10 H 1.08991 * 110.88886 * 34.29930 * 9 8 6 11 11 C 1.54914 * 111.00244 * 270.41889 * 9 8 6 12 12 N 1.47469 * 104.81081 * 204.94943 * 11 9 8 13 13 C 1.36933 * 125.63102 * 204.07319 * 12 11 9 14 14 H 1.07998 * 120.00260 * 179.97438 * 13 12 11 15 15 C 1.38810 * 119.99957 * 359.97438 * 13 12 11 16 16 N 1.31622 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46786 * 89.99762 * 17 15 13 19 19 H 1.48500 * 109.47084 * 209.99892 * 17 15 13 20 20 H 1.48502 * 109.46661 * 330.00259 * 17 15 13 21 21 C 1.47023 * 108.72382 * 24.07334 * 12 11 9 22 22 C 1.54333 * 107.26871 * 358.97305 * 21 12 11 23 23 H 1.09004 * 110.86592 * 96.24358 * 22 21 12 24 24 C 1.53004 * 110.71891 * 219.44158 * 22 21 12 25 25 O 1.33929 * 125.61767 * 180.30536 * 2 1 3 26 26 H 1.09004 * 109.46899 * 90.00136 * 1 2 3 27 27 H 1.08997 * 109.47081 * 210.00128 * 1 2 3 28 28 H 1.09004 * 109.47604 * 330.00102 * 1 2 3 29 29 H 1.08006 * 126.44301 * 0.02562 * 3 2 1 30 30 H 1.07996 * 126.65119 * 179.97438 * 4 3 2 31 31 H 0.97000 * 120.00112 * 359.72923 * 8 6 5 32 32 H 1.08998 * 110.36983 * 323.75879 * 11 9 8 33 33 H 1.09000 * 110.36647 * 86.08132 * 11 9 8 34 34 H 0.96996 * 120.00005 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.88624 * 239.56326 * 21 12 11 36 36 H 1.09001 * 109.88522 * 118.38905 * 21 12 11 37 37 H 1.09005 * 109.46672 * 173.52302 * 24 22 21 38 38 H 1.08995 * 109.47298 * 293.52772 * 24 22 21 39 39 H 1.09003 * 109.46787 * 53.52559 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0006 5 6 3.5823 -0.7117 0.0015 6 6 4.7414 -1.6101 0.0029 7 8 5.8680 -1.1498 0.0038 8 7 4.5590 -2.9454 -0.0019 9 6 5.7169 -3.8429 -0.0065 10 1 6.5401 -3.4182 0.5679 11 6 6.1606 -4.1693 -1.4545 12 7 6.8524 -5.4677 -1.3532 13 6 7.7948 -5.9398 -2.2272 14 1 8.2452 -6.9078 -2.0648 15 6 8.1712 -5.1741 -3.3222 16 7 7.6220 -3.9945 -3.5205 17 14 9.4564 -5.8184 -4.5151 18 1 8.7876 -6.5865 -5.5958 19 1 10.1996 -4.6767 -5.1062 20 1 10.4034 -6.7042 -3.7914 21 6 6.3629 -6.1713 -0.1586 22 6 5.3332 -5.2484 0.5269 23 1 4.3180 -5.5103 0.2287 24 6 5.4810 -5.3088 2.0486 25 8 2.2870 -1.0887 -0.0058 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9612 2.1261 0.0004 30 1 4.5113 1.2703 0.0004 31 1 3.6610 -3.3122 -0.0023 32 1 5.2920 -4.2525 -2.1078 33 1 6.8423 -3.4033 -1.8241 34 1 7.8848 -3.4597 -4.2859 35 1 7.1921 -6.3702 0.5203 36 1 5.8860 -7.1074 -0.4491 37 1 4.8262 -4.5674 2.5069 38 1 5.2069 -6.3031 2.4011 39 1 6.5151 -5.0987 2.3219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079388999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:35 Heat of formation + Delta-G solvation = -21.513903 kcal Electronic energy + Delta-G solvation = -21678.107081 eV Core-core repulsion = 18394.129916 eV Total energy + Delta-G solvation = -3283.977165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -43.71015 -40.89030 -39.14530 -35.77546 -34.56007 -34.08145 -32.90840 -32.18650 -29.92485 -28.06290 -27.29210 -25.41081 -23.56472 -22.63361 -21.97965 -21.60438 -20.98023 -19.25558 -18.94306 -17.56460 -17.45124 -16.96987 -16.47752 -15.76996 -15.63060 -15.55736 -14.71913 -14.46290 -14.27143 -14.12339 -14.02625 -13.98247 -13.90985 -13.68500 -13.40206 -13.07573 -12.85931 -12.76120 -12.61914 -12.23211 -12.10945 -11.85962 -11.71103 -11.46143 -11.39351 -11.05323 -10.78839 -10.18843 -9.46686 -8.93078 -7.78968 -5.26186 -0.00953 1.34897 1.44034 1.47310 1.55144 1.56324 2.06887 2.16207 2.48777 3.30929 3.53773 3.62863 3.75786 3.91383 3.97248 3.99492 4.05153 4.45047 4.54700 4.57288 4.60732 4.62057 4.73690 4.75530 4.86804 4.94754 5.00528 5.06456 5.11783 5.14428 5.22967 5.42447 5.46761 5.47574 5.54059 5.76081 5.86116 6.24950 6.44919 7.00742 7.06674 7.74032 8.36891 9.22054 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.004431 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.022444 B = 6317.591680 C = 7081.773093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 C -0.228 4.228 4 C -0.122 4.122 5 C -0.107 4.107 6 C 0.596 3.404 7 O -0.564 6.564 8 N -0.690 5.690 9 C 0.134 3.866 10 H 0.074 0.926 11 C 0.157 3.843 12 N -0.626 5.626 13 C -0.241 4.241 14 H 0.089 0.911 15 C -0.071 4.071 16 N -0.951 5.951 17 Si 0.984 3.016 18 H -0.284 1.284 19 H -0.297 1.297 20 H -0.265 1.265 21 C 0.134 3.866 22 C -0.094 4.094 23 H 0.096 0.904 24 C -0.130 4.130 25 O -0.170 6.170 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.188 0.812 30 H 0.157 0.843 31 H 0.414 0.586 32 H -0.011 1.011 33 H 0.063 0.937 34 H 0.245 0.755 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.325 6.244 11.176 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 C -0.247 4.247 4 C -0.143 4.143 5 C -0.158 4.158 6 C 0.384 3.616 7 O -0.445 6.445 8 N -0.340 5.340 9 C 0.028 3.972 10 H 0.092 0.908 11 C 0.030 3.970 12 N -0.353 5.353 13 C -0.370 4.370 14 H 0.106 0.894 15 C -0.263 4.263 16 N -0.601 5.601 17 Si 0.812 3.188 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.189 1.189 21 C 0.009 3.991 22 C -0.113 4.113 23 H 0.114 0.886 24 C -0.187 4.187 25 O -0.066 6.066 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.205 0.795 30 H 0.175 0.825 31 H 0.251 0.749 32 H 0.007 0.993 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.504 6.246 11.018 20.803 hybrid contribution 0.778 -0.133 -1.144 1.390 sum -15.725 6.112 9.874 19.548 Atomic orbital electron populations 1.20680 0.81044 1.06175 1.05336 1.23805 0.96051 0.83365 0.99641 1.21935 0.90761 1.01482 1.10519 1.22228 1.00194 0.92592 0.99296 1.21683 0.81963 0.94678 1.17487 1.16899 0.86320 0.82145 0.76224 1.90873 1.24071 1.76794 1.52721 1.45595 1.10423 1.04794 1.73162 1.22309 0.87605 0.89626 0.97641 0.90815 1.21882 0.94342 0.89144 0.91616 1.44702 1.45894 1.17436 1.27251 1.19529 1.13523 1.01451 1.02481 0.89372 1.25753 1.02646 0.97093 1.00824 1.70124 1.46893 1.12746 1.30339 0.84992 0.78427 0.76780 0.78618 1.21039 1.22324 1.18931 1.21606 0.94966 0.94738 0.87780 1.22394 0.99748 0.91959 0.97203 0.88562 1.21704 1.01925 1.03216 0.91861 1.83981 1.15350 1.36154 1.71158 0.88207 0.89265 0.86306 0.79502 0.82488 0.74907 0.99263 0.91898 0.94573 0.94743 0.94676 0.91507 0.90033 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.41 71.24 0.74 0.09 16 2 C 0.02 0.45 7.31 24.97 0.18 0.64 16 3 C -0.23 -4.54 10.77 22.07 0.24 -4.30 16 4 C -0.12 -3.40 10.62 22.39 0.24 -3.17 16 5 C -0.11 -3.39 7.13 24.07 0.17 -3.22 16 6 C 0.60 23.23 7.79 86.44 0.67 23.90 16 7 O -0.56 -26.83 16.56 -4.36 -0.07 -26.90 16 8 N -0.69 -24.51 5.21 -439.93 -2.29 -26.80 16 9 C 0.13 5.52 2.82 46.38 0.13 5.65 16 10 H 0.07 3.36 7.54 -2.39 -0.02 3.34 16 11 C 0.16 8.39 5.58 86.85 0.48 8.87 16 12 N -0.63 -33.73 3.40 -691.86 -2.35 -36.07 16 13 C -0.24 -14.02 10.27 84.03 0.86 -13.16 16 14 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 15 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 16 N -0.95 -60.76 10.09 21.65 0.22 -60.55 16 17 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 21 C 0.13 5.51 6.84 86.73 0.59 6.10 16 22 C -0.09 -3.09 3.19 -9.60 -0.03 -3.12 16 23 H 0.10 2.79 7.99 -2.38 -0.02 2.77 16 24 C -0.13 -3.27 9.16 71.98 0.66 -2.61 16 25 O -0.17 -4.44 10.40 -4.97 -0.05 -4.49 16 26 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.41 11.96 8.29 -92.71 -0.77 11.19 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.06 4.02 5.88 -2.39 -0.01 4.01 16 34 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.03 1.38 7.76 -2.39 -0.02 1.36 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 Total: -1.00 -78.78 328.68 3.18 -75.61 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.29 Total: 17.73 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.41 Total: 11.92 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -4.42 Total: -123.42 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.12 Total: -31.39 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -78.78 3.18 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079388999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.093 kcal (2) G-P(sol) polarization free energy of solvation -78.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds