Wall clock time and date at job start Tue Mar 31 2020 01:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40368 * 126.64006 * 2 1 4 4 C 1.35134 * 107.11185 * 180.22113 * 3 2 1 5 5 O 1.33925 * 108.76612 * 359.78106 * 4 3 2 6 6 C 1.34908 * 109.38817 * 359.97438 * 5 4 3 7 7 C 1.46657 * 125.99183 * 179.97438 * 6 5 4 8 8 O 1.21696 * 120.00343 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99887 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00001 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.78116 * 31.76065 * 10 9 7 12 12 C 1.54331 * 110.84819 * 268.68731 * 10 9 7 13 13 N 1.47021 * 107.26657 * 219.67261 * 12 10 9 14 14 C 1.36938 * 125.64884 * 178.84890 * 13 12 10 15 15 H 1.08000 * 120.00291 * 185.41230 * 14 13 12 16 16 C 1.38813 * 119.99818 * 5.69511 * 14 13 12 17 17 N 1.31616 * 120.00127 * 352.79660 * 16 14 13 18 18 Si 1.86806 * 119.99821 * 172.79833 * 16 14 13 19 19 H 1.48503 * 109.46988 * 94.98414 * 18 16 14 20 20 H 1.48503 * 109.46911 * 214.98618 * 18 16 14 21 21 H 1.48497 * 109.47058 * 334.98418 * 18 16 14 22 22 C 1.47420 * 108.70410 * 358.58836 * 13 12 10 23 23 C 1.54906 * 104.83159 * 24.35335 * 22 13 12 24 24 H 1.09000 * 111.00286 * 81.06859 * 23 22 13 25 25 C 1.53006 * 111.00695 * 204.91600 * 23 22 13 26 26 H 1.09000 * 109.47557 * 270.15222 * 1 2 3 27 27 H 1.09000 * 109.47518 * 30.15889 * 1 2 3 28 28 H 1.09005 * 109.46365 * 150.15625 * 1 2 3 29 29 H 1.07995 * 126.44659 * 359.97438 * 3 2 1 30 30 H 1.07998 * 125.61663 * 179.77584 * 4 3 2 31 31 H 0.97003 * 119.99772 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.98835 * 100.20310 * 12 10 9 33 33 H 1.09002 * 109.78238 * 339.03283 * 12 10 9 34 34 H 0.96998 * 119.99815 * 179.97438 * 17 16 14 35 35 H 1.09002 * 110.37180 * 143.19478 * 22 13 12 36 36 H 1.08999 * 110.36698 * 265.40438 * 22 13 12 37 37 H 1.09002 * 109.46954 * 58.54464 * 25 23 22 38 38 H 1.09002 * 109.46920 * 178.54634 * 25 23 22 39 39 H 1.08998 * 109.46937 * 298.54651 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1263 0.0000 4 6 3.6183 0.6746 -0.0050 5 8 3.6005 -0.6645 -0.0032 6 6 2.3221 -1.0954 0.0036 7 6 1.8844 -2.4951 0.0069 8 8 0.6969 -2.7614 0.0126 9 7 2.7973 -3.4867 0.0038 10 6 2.3601 -4.8849 0.0066 11 1 1.4154 -4.9958 -0.5258 12 6 2.2338 -5.4180 1.4494 13 7 2.7417 -6.7976 1.4509 14 6 2.8232 -7.6169 2.5451 15 1 3.2928 -8.5858 2.4606 16 6 2.2969 -7.2045 3.7616 17 7 1.8478 -5.9753 3.9016 18 14 2.2259 -8.3943 5.2000 19 1 3.4239 -8.2065 6.0573 20 1 1.0006 -8.1341 5.9977 21 1 2.1968 -9.7881 4.6885 22 6 3.1431 -7.1551 0.0782 23 6 3.4489 -5.8018 -0.6107 24 1 4.4479 -5.4496 -0.3537 25 6 3.2808 -5.9082 -2.1277 26 1 -0.3634 0.0027 1.0276 27 1 -0.3634 0.8885 -0.5163 28 1 -0.3632 -0.8915 -0.5115 29 1 2.0305 2.1596 -0.0004 30 1 4.5045 1.2918 -0.0097 31 1 3.7438 -3.2744 -0.0011 32 1 1.1891 -5.4073 1.7605 33 1 2.8297 -4.8027 2.1235 34 1 1.4797 -5.6873 4.7516 35 1 4.0343 -7.7824 0.0946 36 1 2.3287 -7.6678 -0.4337 37 1 2.2623 -6.2199 -2.3594 38 1 3.4764 -4.9378 -2.5839 39 1 3.9838 -6.6427 -2.5206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079426314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:24 Heat of formation + Delta-G solvation = 0.664275 kcal Electronic energy + Delta-G solvation = -21893.850968 eV Core-core repulsion = 18610.835520 eV Total energy + Delta-G solvation = -3283.015447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.67929 -39.36718 -37.48487 -34.39244 -33.66828 -32.60932 -30.47026 -30.36256 -28.26964 -27.05048 -25.61377 -23.89060 -22.60462 -21.31727 -20.32783 -19.90547 -19.43007 -17.88000 -16.89247 -16.32924 -15.98646 -15.81088 -14.94577 -14.28341 -14.10972 -13.77715 -13.59096 -13.15574 -13.03003 -12.99103 -12.77038 -12.68493 -12.49439 -11.94573 -11.74735 -11.69198 -11.34048 -11.03607 -10.75676 -10.63648 -10.40141 -9.98516 -9.94650 -9.80597 -9.72546 -9.65702 -8.73686 -8.56347 -8.38777 -6.81690 -5.69012 -3.03010 1.14819 2.32796 2.76602 3.40858 3.42138 3.47570 3.50029 3.53584 4.52054 4.67809 4.76517 4.95563 5.11836 5.33322 5.43208 5.44139 5.51999 5.55140 5.75331 5.77257 5.79296 5.98982 6.00157 6.03040 6.14401 6.16627 6.20256 6.34316 6.42751 6.49670 6.63617 6.72891 6.84984 6.95561 7.56369 7.59789 7.84045 7.87633 8.26826 8.43529 9.22769 9.83928 10.49183 11.42315 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.004818 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.977137 B = 5810.217300 C = 6597.032495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.095 4.095 3 C -0.225 4.225 4 C -0.012 4.012 5 O -0.163 6.163 6 C -0.074 4.074 7 C 0.600 3.400 8 O -0.517 6.517 9 N -0.700 5.700 10 C 0.119 3.881 11 H 0.092 0.908 12 C 0.172 3.828 13 N -0.606 5.606 14 C -0.232 4.232 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.141 3.859 23 C -0.114 4.114 24 H 0.077 0.923 25 C -0.137 4.137 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.207 0.793 31 H 0.400 0.600 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.253 0.747 35 H 0.042 0.958 36 H 0.023 0.977 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 12.619 -11.242 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.244 4.244 4 C -0.082 4.082 5 O -0.059 6.059 6 C -0.126 4.126 7 C 0.386 3.614 8 O -0.395 6.395 9 N -0.349 5.349 10 C 0.014 3.986 11 H 0.110 0.890 12 C 0.046 3.954 13 N -0.333 5.333 14 C -0.361 4.361 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.015 3.985 23 C -0.134 4.134 24 H 0.096 0.904 25 C -0.195 4.195 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.171 0.829 30 H 0.224 0.776 31 H 0.235 0.765 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.030 12.178 -11.004 16.690 hybrid contribution 0.484 -0.083 0.958 1.076 sum 3.514 12.095 -10.046 16.111 Atomic orbital electron populations 1.20413 0.88275 1.03343 1.03009 1.20625 0.97698 0.90970 1.00484 1.21711 0.92516 1.00015 1.10199 1.24285 0.99829 0.80796 1.03305 1.84064 1.28586 1.22566 1.70644 1.22102 0.81246 0.95179 1.14060 1.16496 0.86000 0.81645 0.77296 1.90849 1.15674 1.82102 1.50830 1.45839 1.09333 1.06335 1.73374 1.22587 0.97553 0.77936 1.00485 0.88983 1.21499 0.99709 0.85283 0.88874 1.44398 1.74795 1.11515 1.02553 1.19046 1.32362 0.97638 0.87010 0.90285 1.24844 1.00751 0.96740 0.97915 1.69980 1.46513 1.15468 1.24433 0.86140 0.77182 0.80269 0.82415 1.21716 1.21617 1.20586 1.21577 0.97279 0.93100 0.86568 1.22628 0.98541 0.97660 0.94569 0.90419 1.21697 1.01775 1.01015 0.94997 0.90759 0.91809 0.89401 0.82904 0.77595 0.76522 0.93055 0.93391 0.93694 0.93977 0.95912 0.92549 0.93153 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.81 36.01 0.35 -0.86 16 2 C -0.09 -1.33 6.20 -104.43 -0.65 -1.97 16 3 C -0.23 -2.45 10.83 -39.88 -0.43 -2.88 16 4 C -0.01 -0.12 12.08 29.63 0.36 0.23 16 5 O -0.16 -2.19 10.40 5.03 0.05 -2.13 16 6 C -0.07 -1.15 7.13 -36.80 -0.26 -1.41 16 7 C 0.60 10.90 7.79 -12.86 -0.10 10.80 16 8 O -0.52 -10.80 14.39 5.19 0.07 -10.72 16 9 N -0.70 -12.08 5.10 -53.34 -0.27 -12.36 16 10 C 0.12 2.32 2.78 -66.09 -0.18 2.13 16 11 H 0.09 1.87 7.42 -51.93 -0.39 1.49 16 12 C 0.17 4.33 5.14 -3.06 -0.02 4.31 16 13 N -0.61 -15.68 3.39 -170.07 -0.58 -16.26 16 14 C -0.23 -6.57 10.26 -15.06 -0.15 -6.72 16 15 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 16 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 17 N -0.92 -27.77 10.36 55.49 0.58 -27.19 16 18 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.14 2.89 6.70 -2.53 -0.02 2.87 16 23 C -0.11 -1.93 3.27 -88.47 -0.29 -2.22 16 24 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 25 C -0.14 -1.86 9.30 37.16 0.35 -1.51 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.29 6.45 -51.93 -0.33 0.96 16 29 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.40 6.02 8.32 -40.82 -0.34 5.68 16 32 H 0.05 1.49 7.40 -51.93 -0.38 1.11 16 33 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 34 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.02 0.47 8.04 -51.93 -0.42 0.05 16 37 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -33.32 325.40 -7.00 -40.31 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.59 Total: 3.53 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.14 Total: 2.51 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.27 Total: -55.81 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.13 Total: -12.85 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.32 -7.00 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079426314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.978 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds