Wall clock time and date at job start Tue Mar 31 2020 00:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34179 * 125.43112 * 2 1 4 4 C 1.47023 * 105.94796 * 179.97438 * 3 2 1 5 5 C 1.47386 * 127.19055 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99874 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99949 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99871 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.64129 * 34.30285 * 8 7 5 10 10 C 1.54322 * 110.72235 * 271.16020 * 8 7 5 11 11 N 1.47018 * 107.27336 * 219.26811 * 10 8 7 12 12 C 1.36939 * 125.64978 * 178.90891 * 11 10 8 13 13 H 1.08001 * 119.99881 * 180.02562 * 12 11 10 14 14 C 1.38813 * 119.99940 * 0.02562 * 12 11 10 15 15 N 1.31615 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46743 * 59.99931 * 16 14 12 18 18 H 1.48495 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46854 * 300.00070 * 16 14 12 20 20 C 1.47426 * 108.70104 * 358.94171 * 11 10 8 21 21 C 1.54909 * 104.83381 * 24.12870 * 20 11 10 22 22 H 1.08997 * 111.00194 * 81.06198 * 21 20 11 23 23 C 1.53003 * 111.00221 * 204.91626 * 21 20 11 24 24 C 1.36417 * 105.61771 * 0.23172 * 4 3 2 25 25 O 1.33648 * 108.39647 * 359.62788 * 24 4 3 26 26 H 1.09005 * 109.47301 * 90.00003 * 1 2 3 27 27 H 1.09001 * 109.46802 * 209.99279 * 1 2 3 28 28 H 1.08999 * 109.47427 * 329.99752 * 1 2 3 29 29 H 1.07997 * 127.02672 * 359.97438 * 3 2 1 30 30 H 0.96999 * 119.99841 * 0.02562 * 7 5 4 31 31 H 1.08998 * 109.88021 * 338.68515 * 10 8 7 32 32 H 1.09005 * 109.88017 * 99.69203 * 10 8 7 33 33 H 0.96994 * 120.00360 * 180.02562 * 15 14 12 34 34 H 1.08998 * 110.36876 * 142.97187 * 20 11 10 35 35 H 1.09009 * 110.36320 * 265.17860 * 20 11 10 36 36 H 1.08998 * 109.46949 * 172.19393 * 23 21 20 37 37 H 1.08994 * 109.47021 * 292.19568 * 23 21 20 38 38 H 1.09005 * 109.47193 * 52.20022 * 23 21 20 39 39 H 1.08005 * 125.79886 * 179.75324 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6709 0.6029 0.0006 5 6 4.9024 1.4127 0.0003 6 8 4.8318 2.6268 0.0000 7 7 6.1067 0.8077 0.0015 8 6 7.3308 1.6126 0.0018 9 1 7.1885 2.5281 0.5760 10 6 7.7719 1.9361 -1.4412 11 7 9.2383 1.8375 -1.4819 12 6 10.0208 2.0309 -2.5889 13 1 11.0940 1.9349 -2.5150 14 6 9.4346 2.3504 -3.8059 15 7 8.1268 2.4679 -3.8958 16 14 10.5020 2.6135 -5.3163 17 1 11.2694 1.3747 -5.6018 18 1 9.6404 2.9421 -6.4802 19 1 11.4447 3.7336 -5.0670 20 6 9.7266 1.4952 -0.1336 21 6 8.5284 0.7970 0.5568 22 1 8.4607 -0.2490 0.2580 23 6 8.6214 0.9256 2.0785 24 6 3.5789 -0.7581 -0.0044 25 8 2.2852 -1.0935 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3634 0.8899 0.5139 29 1 1.9594 2.1231 -0.0004 30 1 6.1629 -0.1607 0.0022 31 1 7.3328 1.2173 -2.1330 32 1 7.4584 2.9456 -1.7072 33 1 7.7172 2.6908 -4.7463 34 1 10.5758 0.8150 -0.1990 35 1 10.0059 2.3983 0.4093 36 1 7.7035 0.5508 2.5315 37 1 9.4691 0.3444 2.4411 38 1 8.7575 1.9733 2.3471 39 1 4.4104 -1.4475 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079623185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:49 Heat of formation + Delta-G solvation = 0.217121 kcal Electronic energy + Delta-G solvation = -21581.342947 eV Core-core repulsion = 18298.308109 eV Total energy + Delta-G solvation = -3283.034838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.57239 -39.30637 -37.38815 -33.90753 -33.12343 -32.74462 -31.82097 -30.35625 -27.95661 -26.61742 -25.61634 -24.17289 -22.88005 -21.09271 -20.31260 -19.99207 -19.13470 -17.66538 -16.85055 -16.35238 -16.01142 -15.72162 -14.93696 -14.52397 -14.15143 -13.74310 -13.52690 -13.32672 -13.20886 -13.06736 -12.87138 -12.73850 -12.61693 -11.99821 -11.90217 -11.66263 -11.32525 -11.00284 -10.74775 -10.60831 -10.40677 -9.96700 -9.92700 -9.74040 -9.69084 -9.57978 -8.66439 -8.58822 -8.42732 -6.81135 -5.66264 -3.01920 1.39872 2.04945 2.75573 3.42616 3.46105 3.48471 3.49390 3.69254 4.46564 4.52886 4.72014 4.91005 5.06838 5.18942 5.23689 5.32399 5.43867 5.46043 5.53509 5.57636 5.72189 5.77864 5.91256 5.99905 6.01723 6.16292 6.21716 6.32332 6.37061 6.50635 6.63916 6.78984 6.94400 6.95895 7.59440 7.61418 7.87431 7.93879 8.28560 8.61871 9.24275 9.85068 10.50049 11.44255 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.004443 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.236649 B = 6300.189760 C = 7267.433025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.022 4.022 3 C -0.161 4.161 4 C -0.220 4.220 5 C 0.583 3.417 6 O -0.533 6.533 7 N -0.708 5.708 8 C 0.121 3.879 9 H 0.089 0.911 10 C 0.173 3.827 11 N -0.606 5.606 12 C -0.232 4.232 13 H 0.078 0.922 14 C -0.007 4.007 15 N -0.919 5.919 16 Si 0.912 3.088 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.141 3.859 21 C -0.113 4.113 22 H 0.077 0.923 23 C -0.137 4.137 24 C 0.012 3.988 25 O -0.176 6.176 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.392 0.608 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.253 0.747 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 -8.651 11.160 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.181 4.181 4 C -0.224 4.224 5 C 0.370 3.630 6 O -0.411 6.411 7 N -0.358 5.358 8 C 0.017 3.983 9 H 0.107 0.893 10 C 0.047 3.953 11 N -0.333 5.333 12 C -0.361 4.361 13 H 0.096 0.904 14 C -0.203 4.203 15 N -0.566 5.566 16 Si 0.742 3.258 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.014 3.986 21 C -0.133 4.133 22 H 0.095 0.905 23 C -0.195 4.195 24 C -0.058 4.058 25 O -0.072 6.072 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.176 0.824 30 H 0.226 0.774 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.609 -7.972 10.918 17.820 hybrid contribution 0.756 -0.173 -0.975 1.246 sum -10.853 -8.145 9.943 16.822 Atomic orbital electron populations 1.20301 0.84804 1.04017 1.03650 1.22274 0.94066 0.83721 1.06991 1.22513 0.90143 0.99691 1.05734 1.21642 0.94932 0.93282 1.12581 1.17217 0.82168 0.87168 0.76465 1.90789 1.86989 1.13617 1.49689 1.45756 1.05500 1.09634 1.74932 1.22505 0.81581 0.93744 1.00500 0.89332 1.21473 0.83744 1.01079 0.88976 1.44399 1.02116 1.82693 1.04053 1.19005 0.89707 1.41348 0.85998 0.90371 1.24829 0.95910 1.01815 0.97791 1.69963 1.07928 1.54141 1.24557 0.86203 0.79080 0.77981 0.82501 1.21191 1.21616 1.21134 1.21587 0.94018 0.95982 0.86969 1.22614 0.96473 0.99596 0.94660 0.90482 1.21702 1.00945 1.01853 0.95020 1.24381 0.84131 0.95499 1.01739 1.83693 1.16513 1.35496 1.71487 0.90020 0.90569 0.89262 0.82427 0.77427 0.93182 0.93386 0.93657 0.93993 0.96014 0.93119 0.92770 0.92548 0.77256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.40 36.01 0.37 -0.13 16 2 C -0.02 -0.25 7.28 -35.74 -0.26 -0.51 16 3 C -0.16 -2.21 10.90 -37.45 -0.41 -2.61 16 4 C -0.22 -3.28 6.31 -103.27 -0.65 -3.93 16 5 C 0.58 10.67 7.81 -12.54 -0.10 10.57 16 6 O -0.53 -12.04 16.67 5.27 0.09 -11.95 16 7 N -0.71 -11.76 5.11 -53.11 -0.27 -12.03 16 8 C 0.12 2.37 2.74 -66.10 -0.18 2.19 16 9 H 0.09 1.85 7.52 -51.93 -0.39 1.46 16 10 C 0.17 4.38 5.12 -3.07 -0.02 4.36 16 11 N -0.61 -15.71 3.39 -170.07 -0.58 -16.29 16 12 C -0.23 -6.58 10.28 -15.06 -0.15 -6.73 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 15 N -0.92 -27.95 10.31 55.49 0.57 -27.38 16 16 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.14 2.88 6.70 -2.53 -0.02 2.87 16 21 C -0.11 -1.89 3.26 -88.47 -0.29 -2.18 16 22 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 23 C -0.14 -1.83 9.31 37.16 0.35 -1.49 16 24 C 0.01 0.14 11.61 30.08 0.35 0.49 16 25 O -0.18 -2.07 10.52 7.67 0.08 -1.99 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 30 H 0.39 5.12 7.52 -40.82 -0.31 4.81 16 31 H 0.05 1.39 7.27 -51.93 -0.38 1.01 16 32 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 33 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.45 7.99 -51.92 -0.41 0.03 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.21 1.59 7.47 -52.48 -0.39 1.20 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -35.36 328.51 -6.90 -42.25 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.61 Total: 2.38 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.10 Total: 2.60 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.28 Total: -55.71 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.17 Total: -13.94 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.36 -6.90 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079623185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.470 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds