Wall clock time and date at job start Tue Mar 31 2020 00:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34179 * 125.43112 * 2 1 4 4 C 1.47023 * 105.94796 * 179.97438 * 3 2 1 5 5 C 1.47386 * 127.19055 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99874 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99949 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99871 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.64129 * 34.30285 * 8 7 5 10 10 C 1.54322 * 110.72235 * 271.16020 * 8 7 5 11 11 N 1.47018 * 107.27336 * 219.26811 * 10 8 7 12 12 C 1.36939 * 125.64978 * 178.90891 * 11 10 8 13 13 H 1.08001 * 119.99881 * 180.02562 * 12 11 10 14 14 C 1.38813 * 119.99940 * 0.02562 * 12 11 10 15 15 N 1.31615 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46743 * 59.99931 * 16 14 12 18 18 H 1.48495 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46854 * 300.00070 * 16 14 12 20 20 C 1.47426 * 108.70104 * 358.94171 * 11 10 8 21 21 C 1.54909 * 104.83381 * 24.12870 * 20 11 10 22 22 H 1.08997 * 111.00194 * 81.06198 * 21 20 11 23 23 C 1.53003 * 111.00221 * 204.91626 * 21 20 11 24 24 C 1.36417 * 105.61771 * 0.23172 * 4 3 2 25 25 O 1.33648 * 108.39647 * 359.62788 * 24 4 3 26 26 H 1.09005 * 109.47301 * 90.00003 * 1 2 3 27 27 H 1.09001 * 109.46802 * 209.99279 * 1 2 3 28 28 H 1.08999 * 109.47427 * 329.99752 * 1 2 3 29 29 H 1.07997 * 127.02672 * 359.97438 * 3 2 1 30 30 H 0.96999 * 119.99841 * 0.02562 * 7 5 4 31 31 H 1.08998 * 109.88021 * 338.68515 * 10 8 7 32 32 H 1.09005 * 109.88017 * 99.69203 * 10 8 7 33 33 H 0.96994 * 120.00360 * 180.02562 * 15 14 12 34 34 H 1.08998 * 110.36876 * 142.97187 * 20 11 10 35 35 H 1.09009 * 110.36320 * 265.17860 * 20 11 10 36 36 H 1.08998 * 109.46949 * 172.19393 * 23 21 20 37 37 H 1.08994 * 109.47021 * 292.19568 * 23 21 20 38 38 H 1.09005 * 109.47193 * 52.20022 * 23 21 20 39 39 H 1.08005 * 125.79886 * 179.75324 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6709 0.6029 0.0006 5 6 4.9024 1.4127 0.0003 6 8 4.8318 2.6268 0.0000 7 7 6.1067 0.8077 0.0015 8 6 7.3308 1.6126 0.0018 9 1 7.1885 2.5281 0.5760 10 6 7.7719 1.9361 -1.4412 11 7 9.2383 1.8375 -1.4819 12 6 10.0208 2.0309 -2.5889 13 1 11.0940 1.9349 -2.5150 14 6 9.4346 2.3504 -3.8059 15 7 8.1268 2.4679 -3.8958 16 14 10.5020 2.6135 -5.3163 17 1 11.2694 1.3747 -5.6018 18 1 9.6404 2.9421 -6.4802 19 1 11.4447 3.7336 -5.0670 20 6 9.7266 1.4952 -0.1336 21 6 8.5284 0.7970 0.5568 22 1 8.4607 -0.2490 0.2580 23 6 8.6214 0.9256 2.0785 24 6 3.5789 -0.7581 -0.0044 25 8 2.2852 -1.0935 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3634 0.8899 0.5139 29 1 1.9594 2.1231 -0.0004 30 1 6.1629 -0.1607 0.0022 31 1 7.3328 1.2173 -2.1330 32 1 7.4584 2.9456 -1.7072 33 1 7.7172 2.6908 -4.7463 34 1 10.5758 0.8150 -0.1990 35 1 10.0059 2.3983 0.4093 36 1 7.7035 0.5508 2.5315 37 1 9.4691 0.3444 2.4411 38 1 8.7575 1.9733 2.3471 39 1 4.4104 -1.4475 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079623185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:47 Heat of formation + Delta-G solvation = -24.996921 kcal Electronic energy + Delta-G solvation = -21582.436310 eV Core-core repulsion = 18298.308109 eV Total energy + Delta-G solvation = -3284.128200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.54440 -40.84079 -39.05455 -35.67406 -34.45990 -34.00164 -32.84640 -32.16045 -29.63147 -27.62226 -27.27604 -25.71230 -24.36230 -22.23659 -21.93837 -21.56394 -20.45722 -18.92057 -18.65247 -17.45873 -17.28207 -17.11043 -16.86133 -15.85814 -15.70533 -15.47125 -14.91976 -14.64126 -14.25173 -14.12492 -13.98306 -13.78860 -13.77360 -13.70918 -13.34389 -13.06324 -12.85899 -12.67427 -12.58124 -12.26278 -12.07267 -11.86417 -11.67529 -11.47041 -11.13542 -10.84834 -10.74976 -10.06319 -9.53856 -8.94304 -7.85560 -5.24050 0.34844 1.03027 1.43558 1.48061 1.54400 1.87107 2.10353 2.34887 2.49085 3.32697 3.51021 3.65773 3.67716 3.75171 4.04219 4.05358 4.10047 4.37681 4.48757 4.56927 4.62195 4.71961 4.74593 4.76710 4.88249 4.89722 5.05842 5.07397 5.11255 5.18826 5.28161 5.39732 5.43645 5.49447 5.60242 5.76520 5.99916 6.15166 6.56398 7.04791 7.23636 7.74560 8.38465 9.23558 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.004443 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.236649 B = 6300.189760 C = 7267.433025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.007 4.007 3 C -0.197 4.197 4 C -0.262 4.262 5 C 0.581 3.419 6 O -0.590 6.590 7 N -0.694 5.694 8 C 0.136 3.864 9 H 0.071 0.929 10 C 0.188 3.812 11 N -0.627 5.627 12 C -0.244 4.244 13 H 0.090 0.910 14 C -0.070 4.070 15 N -0.955 5.955 16 Si 0.982 3.018 17 H -0.270 1.270 18 H -0.298 1.298 19 H -0.277 1.277 20 C 0.132 3.868 21 C -0.092 4.092 22 H 0.097 0.903 23 C -0.129 4.129 24 C 0.046 3.954 25 O -0.173 6.173 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.150 0.850 30 H 0.413 0.587 31 H 0.018 0.982 32 H -0.014 1.014 33 H 0.244 0.756 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 -11.504 12.526 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.217 4.217 4 C -0.267 4.267 5 C 0.370 3.630 6 O -0.472 6.472 7 N -0.345 5.345 8 C 0.030 3.970 9 H 0.089 0.911 10 C 0.062 3.938 11 N -0.354 5.354 12 C -0.373 4.373 13 H 0.108 0.892 14 C -0.263 4.263 15 N -0.604 5.604 16 Si 0.810 3.190 17 H -0.195 1.195 18 H -0.225 1.225 19 H -0.203 1.203 20 C 0.007 3.993 21 C -0.111 4.111 22 H 0.115 0.885 23 C -0.187 4.187 24 C -0.024 4.024 25 O -0.068 6.068 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.168 0.832 30 H 0.250 0.750 31 H 0.036 0.964 32 H 0.005 0.995 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.381 -10.887 12.331 20.003 hybrid contribution 0.679 0.711 -1.380 1.694 sum -10.703 -10.175 10.951 18.385 Atomic orbital electron populations 1.20531 0.81647 1.05667 1.04935 1.22909 0.95617 0.82628 1.04363 1.22630 0.90401 1.00405 1.08262 1.21464 0.93851 0.94735 1.16638 1.17768 0.83404 0.86827 0.75001 1.90752 1.87813 1.16219 1.52401 1.45519 1.04232 1.10472 1.74230 1.22077 0.83878 0.94642 0.96411 0.91058 1.21092 0.83940 0.96702 0.92085 1.44718 1.02311 1.82622 1.05748 1.19511 0.90636 1.40170 0.86962 0.89211 1.25754 0.97117 1.02307 1.01084 1.70243 1.09897 1.55732 1.24518 0.85102 0.77277 0.78445 0.78221 1.19546 1.22464 1.20282 1.21877 0.96102 0.96756 0.84608 1.22545 0.92336 0.99410 0.96840 0.88495 1.21662 1.03087 1.02188 0.91759 1.25036 0.84987 0.94577 0.97825 1.83756 1.16577 1.35522 1.70941 0.88769 0.88630 0.87907 0.83247 0.74966 0.96397 0.99527 0.94689 0.92349 0.95774 0.91323 0.90066 0.93213 0.73175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.40 71.24 0.74 -0.08 16 2 C -0.01 -0.14 7.28 24.76 0.18 0.04 16 3 C -0.20 -5.47 10.90 23.65 0.26 -5.21 16 4 C -0.26 -7.81 6.31 -18.99 -0.12 -7.93 16 5 C 0.58 21.96 7.81 86.65 0.68 22.64 16 6 O -0.59 -28.53 16.67 -4.07 -0.07 -28.60 16 7 N -0.69 -22.95 5.11 -440.21 -2.25 -25.20 16 8 C 0.14 5.39 2.74 46.18 0.13 5.52 16 9 H 0.07 3.10 7.52 -2.39 -0.02 3.08 16 10 C 0.19 10.05 5.12 86.73 0.44 10.49 16 11 N -0.63 -33.21 3.39 -691.98 -2.35 -35.55 16 12 C -0.24 -14.01 10.28 84.03 0.86 -13.14 16 13 H 0.09 4.81 7.83 -2.91 -0.02 4.78 16 14 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 15 N -0.95 -61.06 10.31 21.65 0.22 -60.83 16 16 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 C 0.13 5.23 6.70 86.85 0.58 5.81 16 21 C -0.09 -2.87 3.26 -9.40 -0.03 -2.90 16 22 H 0.10 2.70 8.01 -2.39 -0.02 2.68 16 23 C -0.13 -2.99 9.31 71.98 0.67 -2.32 16 24 C 0.05 0.94 11.61 67.39 0.78 1.73 16 25 O -0.17 -3.58 10.52 4.52 0.05 -3.53 16 26 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.41 9.93 7.52 -92.71 -0.70 9.23 16 31 H 0.02 1.05 7.27 -2.39 -0.02 1.03 16 32 H -0.01 -0.87 7.51 -2.38 -0.02 -0.89 16 33 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.02 0.97 7.99 -2.38 -0.02 0.95 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.24 8.08 -2.38 -0.02 1.22 16 39 H 0.25 2.73 7.47 -2.91 -0.02 2.71 16 Total: -1.00 -83.61 328.51 3.63 -79.98 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.36 Total: 13.63 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.64 Total: 10.98 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -4.38 Total: -121.59 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.02 Total: -32.13 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -83.61 3.63 -79.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079623185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.981 kcal (2) G-P(sol) polarization free energy of solvation -83.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds