Wall clock time and date at job start Tue Mar 31 2020 00:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35135 * 125.61494 * 2 1 4 4 C 1.40360 * 107.11355 * 180.12043 * 3 2 1 5 5 C 1.36541 * 106.70791 * 359.57828 * 4 3 2 6 6 C 1.46658 * 125.98384 * 180.28202 * 5 4 3 7 7 O 1.21690 * 120.00209 * 353.66630 * 6 5 4 8 8 N 1.34779 * 119.99754 * 173.66297 * 6 5 4 9 9 C 1.46498 * 119.99969 * 2.85306 * 8 6 5 10 10 C 1.46496 * 119.99938 * 182.84646 * 8 6 5 11 11 C 1.52995 * 109.47159 * 84.88063 * 10 8 6 12 12 H 1.08994 * 112.96696 * 294.03232 * 11 10 8 13 13 C 1.53943 * 113.76825 * 65.71038 * 11 10 8 14 14 C 1.53946 * 86.29007 * 137.90793 * 13 11 10 15 15 N 1.47584 * 113.77093 * 162.35500 * 11 10 8 16 16 C 1.36935 * 134.49509 * 41.06009 * 15 11 10 17 17 H 1.08006 * 119.99620 * 342.82144 * 16 15 11 18 18 C 1.38815 * 120.00332 * 162.81182 * 16 15 11 19 19 N 1.31612 * 120.00090 * 166.42741 * 18 16 15 20 20 Si 1.86805 * 119.99616 * 346.43075 * 18 16 15 21 21 H 1.48503 * 109.46904 * 85.20221 * 20 18 16 22 22 H 1.48502 * 109.46737 * 205.20314 * 20 18 16 23 23 H 1.48499 * 109.47380 * 325.20378 * 20 18 16 24 24 O 1.33930 * 125.61856 * 179.64318 * 2 1 3 25 25 H 1.08997 * 109.46534 * 180.33677 * 1 2 3 26 26 H 1.09000 * 109.46971 * 300.33461 * 1 2 3 27 27 H 1.08998 * 109.46954 * 60.33737 * 1 2 3 28 28 H 1.08002 * 126.43978 * 359.97438 * 3 2 1 29 29 H 1.08009 * 126.64131 * 179.83353 * 4 3 2 30 30 H 1.08998 * 109.47698 * 84.46376 * 9 8 6 31 31 H 1.09000 * 109.47022 * 204.46433 * 9 8 6 32 32 H 1.08999 * 109.46853 * 324.45864 * 9 8 6 33 33 H 1.09007 * 109.47448 * 204.88238 * 10 8 6 34 34 H 1.09004 * 109.47042 * 324.87714 * 10 8 6 35 35 H 1.09001 * 113.74211 * 252.24867 * 13 11 10 36 36 H 1.08995 * 113.74672 * 23.45545 * 13 11 10 37 37 H 1.09004 * 113.77154 * 90.69451 * 14 13 11 38 38 H 1.08998 * 113.77490 * 221.97376 * 14 13 11 39 39 H 0.97002 * 119.99797 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6532 -0.0028 5 6 3.5823 -0.7115 0.0052 6 6 4.7415 -1.6099 0.0115 7 8 5.8642 -1.1555 -0.1064 8 7 4.5634 -2.9389 0.1481 9 6 3.2092 -3.4920 0.2273 10 6 5.7239 -3.8302 0.2171 11 6 6.2317 -3.8957 1.6588 12 1 6.6328 -2.9458 2.0120 13 6 5.2404 -4.5526 2.6365 14 6 6.4631 -5.2691 3.2379 15 7 7.1115 -5.0497 1.9278 16 6 8.1210 -5.6679 1.2395 17 1 8.2354 -5.4965 0.1792 18 6 8.9974 -6.5146 1.9043 19 7 9.7907 -7.3104 1.2190 20 14 9.0507 -6.5245 3.7715 21 1 8.0032 -7.4396 4.2918 22 1 10.3854 -6.9904 4.2261 23 1 8.8057 -5.1513 4.2810 24 8 2.2871 -1.0887 0.0068 25 1 -0.3632 -1.0277 0.0060 26 1 -0.3633 0.5190 0.8870 27 1 -0.3633 0.5086 -0.8930 28 1 1.9612 2.1261 -0.0004 29 1 4.5113 1.2705 -0.0061 30 1 2.8176 -3.6402 -0.7790 31 1 3.2372 -4.4478 0.7506 32 1 2.5651 -2.7998 0.7696 33 1 5.4355 -4.8285 -0.1123 34 1 6.5141 -3.4485 -0.4295 35 1 4.7651 -3.8480 3.3190 36 1 4.5291 -5.2238 2.1554 37 1 6.9337 -4.7235 4.0558 38 1 6.2856 -6.3184 3.4733 39 1 10.4028 -7.9024 1.6836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085471655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:23 Heat of formation + Delta-G solvation = 50.228653 kcal Electronic energy + Delta-G solvation = -21766.480619 eV Core-core repulsion = 18485.614444 eV Total energy + Delta-G solvation = -3280.866175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -42.88145 -39.65967 -38.07693 -35.42354 -33.41745 -32.27102 -32.14023 -29.31509 -28.34574 -27.39783 -26.14735 -23.56603 -22.95625 -21.89517 -21.33629 -19.99501 -19.19316 -17.54230 -16.85670 -16.64439 -16.08385 -15.69521 -15.39853 -15.08291 -14.27662 -13.92686 -13.54129 -13.48146 -13.36258 -13.31916 -13.10874 -12.98514 -12.82632 -12.45515 -12.26937 -11.99009 -11.82149 -11.55846 -11.06169 -10.69651 -10.24704 -10.16875 -10.11153 -10.06242 -9.93252 -9.38628 -8.89256 -8.70542 -8.37858 -7.08645 -5.87706 -3.22327 0.97045 2.16946 2.46085 3.07625 3.24464 3.36716 3.47779 3.48997 4.31313 4.57487 4.60402 4.74052 4.74976 4.96806 5.05654 5.17091 5.24878 5.28070 5.33321 5.43850 5.49742 5.62746 5.64722 5.70734 5.80890 5.91964 5.93973 6.12129 6.21202 6.25295 6.35324 6.41462 6.51723 6.55584 6.76947 7.04063 7.27283 7.43004 8.13507 8.39062 8.72994 9.67959 10.34035 11.29328 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037030 B = 0.003910 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.970803 B = 7159.170300 C = 7345.689501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.005 3.995 3 C -0.223 4.223 4 C -0.123 4.123 5 C -0.070 4.070 6 C 0.594 3.406 7 O -0.516 6.516 8 N -0.597 5.597 9 C 0.075 3.925 10 C 0.119 3.881 11 C 0.130 3.870 12 H 0.054 0.946 13 C -0.144 4.144 14 C 0.098 3.902 15 N -0.615 5.615 16 C -0.228 4.228 17 H 0.098 0.902 18 C 0.017 3.983 19 N -0.920 5.920 20 Si 0.884 3.116 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.272 1.272 24 O -0.155 6.155 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.037 13.759 -1.221 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 C -0.242 4.242 4 C -0.143 4.143 5 C -0.121 4.121 6 C 0.382 3.618 7 O -0.394 6.394 8 N -0.329 5.329 9 C -0.068 4.068 10 C -0.004 4.004 11 C 0.023 3.977 12 H 0.071 0.929 13 C -0.182 4.182 14 C -0.027 4.027 15 N -0.343 5.343 16 C -0.354 4.354 17 H 0.116 0.884 18 C -0.180 4.180 19 N -0.566 5.566 20 Si 0.715 3.285 21 H -0.213 1.213 22 H -0.227 1.227 23 H -0.197 1.197 24 O -0.052 6.052 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.171 0.829 29 H 0.177 0.823 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.195 13.403 -1.400 25.117 hybrid contribution 0.324 0.156 1.138 1.194 sum -20.871 13.559 -0.262 24.890 Atomic orbital electron populations 1.20386 0.84774 1.04364 1.03821 1.22880 0.94374 0.84680 1.02822 1.21547 0.92396 0.99719 1.10509 1.21936 0.98574 0.93017 1.00808 1.22175 0.81808 0.94656 1.13501 1.16703 0.85969 0.81468 0.77706 1.90905 1.22380 1.75556 1.50527 1.47733 1.08268 1.05846 1.71061 1.22048 0.82424 1.00306 1.02042 1.21788 0.86765 0.93027 0.98774 1.22516 0.90090 0.92284 0.92808 0.92894 1.23594 0.96751 0.99223 0.98660 1.22787 0.90868 0.98931 0.90135 1.46588 1.40782 1.29905 1.17040 1.18754 1.03806 1.20364 0.92481 0.88412 1.24922 0.96723 0.98781 0.97599 1.69740 1.26443 1.25600 1.34776 0.86799 0.76262 0.78032 0.87437 1.21270 1.22692 1.19723 1.84269 1.16134 1.34047 1.70731 0.90286 0.89374 0.89388 0.82915 0.82342 0.92534 0.90104 0.90297 0.89225 0.89853 0.92584 0.90230 0.93922 0.92482 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.41 36.01 0.38 0.01 16 2 C 0.00 0.04 7.31 -35.41 -0.26 -0.22 16 3 C -0.22 -2.12 10.77 -39.89 -0.43 -2.55 16 4 C -0.12 -1.50 10.63 -39.40 -0.42 -1.92 16 5 C -0.07 -0.96 6.77 -36.80 -0.25 -1.20 16 6 C 0.59 9.82 7.61 -12.86 -0.10 9.72 16 7 O -0.52 -10.33 16.52 5.20 0.09 -10.25 16 8 N -0.60 -9.10 2.78 -183.14 -0.51 -9.61 16 9 C 0.07 0.84 9.35 59.85 0.56 1.40 16 10 C 0.12 2.16 5.26 -4.05 -0.02 2.14 16 11 C 0.13 2.64 4.54 -66.87 -0.30 2.34 16 12 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.14 -2.49 7.29 -25.79 -0.19 -2.68 16 14 C 0.10 2.10 5.81 -2.85 -0.02 2.08 16 15 N -0.62 -15.11 3.34 -169.71 -0.57 -15.68 16 16 C -0.23 -6.56 10.94 -15.06 -0.16 -6.72 16 17 H 0.10 2.97 8.06 -52.48 -0.42 2.54 16 18 C 0.02 0.52 5.50 -17.43 -0.10 0.42 16 19 N -0.92 -29.02 13.97 55.49 0.78 -28.24 16 20 Si 0.88 23.11 25.13 -169.99 -4.27 18.83 16 21 H -0.29 -7.21 6.87 56.52 0.39 -6.82 16 22 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 23 H -0.27 -6.96 6.06 56.52 0.34 -6.62 16 24 O -0.16 -1.77 7.28 5.01 0.04 -1.74 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.85 6.62 -51.93 -0.34 0.50 16 32 H 0.08 0.83 5.39 -51.93 -0.28 0.55 16 33 H 0.09 1.58 8.03 -51.92 -0.42 1.16 16 34 H 0.08 1.69 7.54 -51.93 -0.39 1.30 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.24 6.92 -51.93 -0.36 0.88 16 37 H 0.04 0.93 6.64 -51.93 -0.34 0.59 16 38 H 0.06 1.24 7.06 -51.93 -0.37 0.87 16 39 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -34.58 320.78 -6.44 -41.02 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.52 Total: -1.99 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.31 Total: 2.81 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.30 Total: -53.53 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.12 Total: -11.98 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.27 Total: 18.83 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.58 -6.44 -41.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085471655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.251 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds