Wall clock time and date at job start Tue Mar 31 2020 00:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35135 * 125.61494 * 2 1 4 4 C 1.40360 * 107.11355 * 180.12043 * 3 2 1 5 5 C 1.36541 * 106.70791 * 359.57828 * 4 3 2 6 6 C 1.46658 * 125.98384 * 180.28202 * 5 4 3 7 7 O 1.21690 * 120.00209 * 353.66630 * 6 5 4 8 8 N 1.34779 * 119.99754 * 173.66297 * 6 5 4 9 9 C 1.46498 * 119.99969 * 2.85306 * 8 6 5 10 10 C 1.46496 * 119.99938 * 182.84646 * 8 6 5 11 11 C 1.52995 * 109.47159 * 84.88063 * 10 8 6 12 12 H 1.08994 * 112.96696 * 294.03232 * 11 10 8 13 13 C 1.53943 * 113.76825 * 65.71038 * 11 10 8 14 14 C 1.53946 * 86.29007 * 137.90793 * 13 11 10 15 15 N 1.47584 * 113.77093 * 162.35500 * 11 10 8 16 16 C 1.36935 * 134.49509 * 41.06009 * 15 11 10 17 17 H 1.08006 * 119.99620 * 342.82144 * 16 15 11 18 18 C 1.38815 * 120.00332 * 162.81182 * 16 15 11 19 19 N 1.31612 * 120.00090 * 166.42741 * 18 16 15 20 20 Si 1.86805 * 119.99616 * 346.43075 * 18 16 15 21 21 H 1.48503 * 109.46904 * 85.20221 * 20 18 16 22 22 H 1.48502 * 109.46737 * 205.20314 * 20 18 16 23 23 H 1.48499 * 109.47380 * 325.20378 * 20 18 16 24 24 O 1.33930 * 125.61856 * 179.64318 * 2 1 3 25 25 H 1.08997 * 109.46534 * 180.33677 * 1 2 3 26 26 H 1.09000 * 109.46971 * 300.33461 * 1 2 3 27 27 H 1.08998 * 109.46954 * 60.33737 * 1 2 3 28 28 H 1.08002 * 126.43978 * 359.97438 * 3 2 1 29 29 H 1.08009 * 126.64131 * 179.83353 * 4 3 2 30 30 H 1.08998 * 109.47698 * 84.46376 * 9 8 6 31 31 H 1.09000 * 109.47022 * 204.46433 * 9 8 6 32 32 H 1.08999 * 109.46853 * 324.45864 * 9 8 6 33 33 H 1.09007 * 109.47448 * 204.88238 * 10 8 6 34 34 H 1.09004 * 109.47042 * 324.87714 * 10 8 6 35 35 H 1.09001 * 113.74211 * 252.24867 * 13 11 10 36 36 H 1.08995 * 113.74672 * 23.45545 * 13 11 10 37 37 H 1.09004 * 113.77154 * 90.69451 * 14 13 11 38 38 H 1.08998 * 113.77490 * 221.97376 * 14 13 11 39 39 H 0.97002 * 119.99797 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6532 -0.0028 5 6 3.5823 -0.7115 0.0052 6 6 4.7415 -1.6099 0.0115 7 8 5.8642 -1.1555 -0.1064 8 7 4.5634 -2.9389 0.1481 9 6 3.2092 -3.4920 0.2273 10 6 5.7239 -3.8302 0.2171 11 6 6.2317 -3.8957 1.6588 12 1 6.6328 -2.9458 2.0120 13 6 5.2404 -4.5526 2.6365 14 6 6.4631 -5.2691 3.2379 15 7 7.1115 -5.0497 1.9278 16 6 8.1210 -5.6679 1.2395 17 1 8.2354 -5.4965 0.1792 18 6 8.9974 -6.5146 1.9043 19 7 9.7907 -7.3104 1.2190 20 14 9.0507 -6.5245 3.7715 21 1 8.0032 -7.4396 4.2918 22 1 10.3854 -6.9904 4.2261 23 1 8.8057 -5.1513 4.2810 24 8 2.2871 -1.0887 0.0068 25 1 -0.3632 -1.0277 0.0060 26 1 -0.3633 0.5190 0.8870 27 1 -0.3633 0.5086 -0.8930 28 1 1.9612 2.1261 -0.0004 29 1 4.5113 1.2705 -0.0061 30 1 2.8176 -3.6402 -0.7790 31 1 3.2372 -4.4478 0.7506 32 1 2.5651 -2.7998 0.7696 33 1 5.4355 -4.8285 -0.1123 34 1 6.5141 -3.4485 -0.4295 35 1 4.7651 -3.8480 3.3190 36 1 4.5291 -5.2238 2.1554 37 1 6.9337 -4.7235 4.0558 38 1 6.2856 -6.3184 3.4733 39 1 10.4028 -7.9024 1.6836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085471655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:22 Heat of formation + Delta-G solvation = 26.520386 kcal Electronic energy + Delta-G solvation = -21767.508686 eV Core-core repulsion = 18485.614444 eV Total energy + Delta-G solvation = -3281.894242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.72922 -41.01185 -39.68633 -36.71722 -34.43171 -34.19457 -32.94812 -30.72307 -30.22527 -28.29379 -27.21760 -25.21976 -24.62979 -22.86101 -22.24839 -21.26806 -20.74387 -18.94823 -18.46016 -17.71542 -17.48611 -17.16927 -16.69445 -16.41345 -15.68203 -15.41500 -14.94314 -14.83563 -14.32417 -14.28594 -14.03663 -13.97585 -13.86795 -13.77216 -13.66177 -13.36134 -13.13019 -12.78604 -12.64345 -12.41595 -12.02917 -11.90652 -11.78278 -11.44163 -11.28209 -11.02894 -10.95085 -9.89336 -9.41560 -9.11030 -8.15568 -5.46669 0.00943 1.27834 1.35392 1.36454 1.42502 1.50396 1.96953 2.10535 2.40766 2.97744 3.14017 3.46025 3.67034 3.87666 3.95008 4.08102 4.18572 4.27081 4.35460 4.52009 4.55697 4.59274 4.66797 4.68311 4.72939 4.80275 4.83132 4.88002 4.92972 4.97134 5.00593 5.15825 5.21172 5.41888 5.50239 5.52040 5.89545 6.15237 6.26184 6.52055 6.90870 7.43257 8.24279 9.05544 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037030 B = 0.003910 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.970803 B = 7159.170300 C = 7345.689501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 C -0.232 4.232 4 C -0.123 4.123 5 C -0.103 4.103 6 C 0.590 3.410 7 O -0.569 6.569 8 N -0.594 5.594 9 C 0.072 3.928 10 C 0.133 3.867 11 C 0.126 3.874 12 H 0.035 0.965 13 C -0.111 4.111 14 C 0.087 3.913 15 N -0.640 5.640 16 C -0.217 4.217 17 H 0.063 0.937 18 C -0.046 4.046 19 N -0.969 5.969 20 Si 0.948 3.052 21 H -0.266 1.266 22 H -0.306 1.306 23 H -0.265 1.265 24 O -0.156 6.156 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.182 0.818 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.337 14.841 0.314 30.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.030 4.030 3 C -0.250 4.250 4 C -0.144 4.144 5 C -0.154 4.154 6 C 0.380 3.620 7 O -0.450 6.450 8 N -0.325 5.325 9 C -0.069 4.069 10 C 0.009 3.991 11 C 0.019 3.981 12 H 0.052 0.948 13 C -0.148 4.148 14 C -0.037 4.037 15 N -0.369 5.369 16 C -0.345 4.345 17 H 0.081 0.919 18 C -0.239 4.239 19 N -0.617 5.617 20 Si 0.776 3.224 21 H -0.192 1.192 22 H -0.234 1.234 23 H -0.190 1.190 24 O -0.053 6.053 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.199 0.801 29 H 0.172 0.828 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.581 14.498 0.150 29.404 hybrid contribution 1.502 -0.036 0.558 1.603 sum -24.078 14.462 0.708 28.097 Atomic orbital electron populations 1.20668 0.81227 1.05677 1.05743 1.23823 0.96074 0.83795 0.99317 1.21876 0.90905 1.01449 1.10778 1.22182 1.00026 0.92715 0.99487 1.21549 0.82107 0.94319 1.17446 1.17088 0.86321 0.81924 0.76717 1.90864 1.24648 1.76535 1.52992 1.47743 1.08883 1.05273 1.70556 1.22293 0.80171 1.01032 1.03410 1.21395 0.87249 0.93585 0.96865 1.22662 0.90110 0.90433 0.94865 0.94782 1.23421 0.95203 0.98916 0.97280 1.23009 0.92407 0.99595 0.88726 1.46812 1.40025 1.31550 1.18500 1.18665 1.04451 1.19689 0.91682 0.91885 1.25621 0.97027 0.99041 1.02231 1.69887 1.28068 1.27158 1.36594 0.85776 0.76283 0.78525 0.81787 1.19182 1.23418 1.19002 1.84235 1.15178 1.34974 1.70928 0.89343 0.87258 0.87367 0.80063 0.82849 0.91205 0.88673 0.88947 0.88622 0.93343 0.89167 0.87697 0.93834 0.92352 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.41 71.24 0.74 0.38 16 2 C 0.02 0.32 7.31 24.97 0.18 0.51 16 3 C -0.23 -3.74 10.77 22.07 0.24 -3.51 16 4 C -0.12 -2.91 10.63 22.39 0.24 -2.68 16 5 C -0.10 -2.74 6.77 24.07 0.16 -2.58 16 6 C 0.59 19.84 7.61 86.44 0.66 20.49 16 7 O -0.57 -24.11 16.52 -4.32 -0.07 -24.18 16 8 N -0.59 -17.79 2.78 -851.54 -2.37 -20.16 16 9 C 0.07 1.43 9.35 127.77 1.19 2.63 16 10 C 0.13 4.90 5.26 86.38 0.45 5.36 16 11 C 0.13 5.07 4.54 45.09 0.20 5.28 16 12 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 13 C -0.11 -3.45 7.29 31.25 0.23 -3.23 16 14 C 0.09 3.53 5.81 86.44 0.50 4.03 16 15 N -0.64 -31.49 3.34 -690.86 -2.31 -33.80 16 16 C -0.22 -12.90 10.94 84.03 0.92 -11.99 16 17 H 0.06 4.08 8.06 -2.91 -0.02 4.05 16 18 C -0.05 -2.82 5.50 84.86 0.47 -2.35 16 19 N -0.97 -63.23 13.97 21.65 0.30 -62.93 16 20 Si 0.95 48.17 25.13 68.60 1.72 49.89 16 21 H -0.27 -12.56 6.87 99.48 0.68 -11.87 16 22 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 23 H -0.27 -12.99 6.06 99.48 0.60 -12.38 16 24 O -0.16 -3.16 7.28 -4.99 -0.04 -3.20 16 25 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.63 6.62 -2.39 -0.02 1.62 16 32 H 0.09 1.64 5.39 -2.39 -0.01 1.63 16 33 H 0.10 3.38 8.03 -2.38 -0.02 3.36 16 34 H 0.05 2.10 7.54 -2.39 -0.02 2.09 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.10 2.79 6.92 -2.39 -0.02 2.78 16 37 H 0.04 1.79 6.64 -2.39 -0.02 1.77 16 38 H 0.06 2.37 7.06 -2.39 -0.02 2.35 16 39 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -79.63 320.78 4.35 -75.28 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.92 Total: 6.75 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.19 Total: 12.35 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.37 Total: -116.89 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.11 Total: -27.38 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.72 Total: 49.89 kcal Total: -79.63 4.35 -75.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085471655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.797 kcal (2) G-P(sol) polarization free energy of solvation -79.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds