Wall clock time and date at job start Tue Mar 31 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35138 * 125.61671 * 2 1 4 4 C 1.40364 * 107.11497 * 179.77930 * 3 2 1 5 5 C 1.36548 * 106.70823 * 0.35392 * 4 3 2 6 6 C 1.46653 * 125.98719 * 179.91298 * 5 4 3 7 7 O 1.21697 * 120.00299 * 6.23817 * 6 5 4 8 8 N 1.34780 * 119.99895 * 186.24940 * 6 5 4 9 9 C 1.46504 * 119.99890 * 356.01433 * 8 6 5 10 10 C 1.46501 * 120.00027 * 176.02633 * 8 6 5 11 11 C 1.52993 * 109.47448 * 95.68429 * 10 8 6 12 12 H 1.08997 * 113.04300 * 65.72388 * 11 10 8 13 13 C 1.53947 * 113.76871 * 293.96904 * 11 10 8 14 14 C 1.53951 * 86.28902 * 222.09217 * 13 11 10 15 15 N 1.47581 * 86.24010 * 23.54864 * 14 13 11 16 16 C 1.36935 * 134.49078 * 155.41935 * 15 14 13 17 17 H 1.07996 * 120.00462 * 185.21592 * 16 15 14 18 18 C 1.38821 * 119.99775 * 5.21766 * 16 15 14 19 19 N 1.31609 * 120.00029 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99625 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46939 * 60.00666 * 20 18 16 22 22 H 1.48499 * 109.46891 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47134 * 300.00251 * 20 18 16 24 24 O 1.33931 * 125.61830 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47112 * 300.02695 * 1 2 3 27 27 H 1.08999 * 109.47137 * 60.02403 * 1 2 3 28 28 H 1.07994 * 126.43872 * 359.97438 * 3 2 1 29 29 H 1.07996 * 126.65004 * 180.21995 * 4 3 2 30 30 H 1.08998 * 109.47246 * 275.71908 * 9 8 6 31 31 H 1.08996 * 109.46700 * 35.72360 * 9 8 6 32 32 H 1.09004 * 109.46751 * 155.72037 * 9 8 6 33 33 H 1.08998 * 109.46854 * 335.68251 * 10 8 6 34 34 H 1.09005 * 109.46604 * 215.68779 * 10 8 6 35 35 H 1.09000 * 113.74529 * 107.75039 * 13 11 10 36 36 H 1.08996 * 113.84209 * 336.44642 * 13 11 10 37 37 H 1.08996 * 113.76835 * 137.91250 * 14 13 11 38 38 H 1.09003 * 113.76649 * 269.19179 * 14 13 11 39 39 H 0.97003 * 119.99962 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0052 5 6 3.5823 -0.7116 0.0000 6 6 4.7414 -1.6101 0.0009 7 8 5.8638 -1.1553 0.1211 8 7 4.5636 -2.9395 -0.1317 9 6 3.2093 -3.4953 -0.1889 10 6 5.7247 -3.8287 -0.2184 11 6 6.0395 -4.3931 1.1684 12 1 5.2560 -5.0473 1.5507 13 6 6.5088 -3.3307 2.1787 14 6 7.5581 -4.3644 2.6266 15 7 7.3983 -4.9628 1.2870 16 6 8.1910 -5.7342 0.4798 17 1 7.8650 -5.9822 -0.5195 18 6 9.4137 -6.1977 0.9460 19 7 9.8108 -5.8960 2.1640 20 14 10.4947 -7.2506 -0.1550 21 1 10.8437 -6.4887 -1.3809 22 1 11.7370 -7.6142 0.5728 23 1 9.7626 -8.4864 -0.5317 24 8 2.2869 -1.0887 0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5143 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 1.9612 2.1260 -0.0004 29 1 4.5113 1.2703 0.0099 30 1 2.8330 -3.6403 0.8238 31 1 2.5562 -2.8063 -0.7241 32 1 3.2314 -4.4531 -0.7088 33 1 6.5843 -3.2689 -0.5866 34 1 5.5044 -4.6481 -0.9028 35 1 5.7693 -3.0962 2.9444 36 1 6.9380 -2.4419 1.7162 37 1 8.5462 -3.9393 2.8029 38 1 7.2213 -5.0087 3.4386 39 1 10.6650 -6.2201 2.4899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085471656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:38 Heat of formation + Delta-G solvation = 45.962743 kcal Electronic energy + Delta-G solvation = -21782.091325 eV Core-core repulsion = 18501.040167 eV Total energy + Delta-G solvation = -3281.051158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83492 -39.56009 -37.56951 -35.35781 -33.37342 -32.22240 -32.02120 -29.01894 -27.74342 -27.28274 -26.07269 -23.25803 -22.95864 -21.76761 -21.22497 -19.82621 -18.90932 -17.46950 -16.76347 -16.51777 -16.09218 -15.54043 -15.22152 -14.64226 -13.98367 -13.93570 -13.56433 -13.47878 -13.35316 -13.23637 -13.11769 -12.92686 -12.42260 -12.26272 -12.14933 -11.69928 -11.32491 -10.97361 -10.82860 -10.63435 -10.41249 -10.12613 -10.02834 -9.77837 -9.63426 -9.41922 -8.73123 -8.64131 -8.29623 -6.78467 -5.68845 -3.00583 1.02325 2.21527 2.50770 3.17761 3.29539 3.44355 3.48119 3.49580 4.36245 4.52545 4.65888 4.79335 4.99249 5.08402 5.15723 5.29290 5.33980 5.46425 5.49049 5.57714 5.61721 5.70296 5.71564 5.89611 5.98482 6.01769 6.15360 6.25784 6.42983 6.59523 6.68799 6.78754 6.86313 6.88467 7.35205 7.47575 7.60471 7.68717 8.06437 8.23391 9.12174 9.78724 10.70535 11.48757 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038775 B = 0.003753 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.945593 B = 7458.557481 C = 7580.279593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.003 3.997 3 C -0.222 4.222 4 C -0.124 4.124 5 C -0.068 4.068 6 C 0.595 3.405 7 O -0.509 6.509 8 N -0.599 5.599 9 C 0.076 3.924 10 C 0.116 3.884 11 C 0.127 3.873 12 H 0.042 0.958 13 C -0.160 4.160 14 C 0.165 3.835 15 N -0.600 5.600 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 O -0.156 6.156 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 11.573 -4.368 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 C -0.241 4.241 4 C -0.144 4.144 5 C -0.120 4.120 6 C 0.382 3.618 7 O -0.386 6.386 8 N -0.331 5.331 9 C -0.067 4.067 10 C -0.007 4.007 11 C 0.019 3.981 12 H 0.059 0.941 13 C -0.198 4.198 14 C 0.040 3.960 15 N -0.327 5.327 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.740 3.260 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.213 1.213 24 O -0.052 6.052 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.171 0.829 29 H 0.177 0.823 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.714 11.262 -4.378 23.122 hybrid contribution 0.515 -0.645 -0.456 0.943 sum -19.199 10.617 -4.834 22.465 Atomic orbital electron populations 1.20378 0.84831 1.04318 1.03789 1.22868 0.94358 0.84716 1.02993 1.21542 0.92422 0.99682 1.10488 1.21933 0.98554 0.93019 1.00916 1.22227 0.81782 0.94699 1.13291 1.16647 0.85979 0.81401 0.77767 1.90904 1.22240 1.75591 1.49874 1.47717 1.08118 1.05832 1.71410 1.21993 0.82700 0.99778 1.02268 1.21933 0.87255 0.92408 0.99059 1.22556 0.89717 0.92917 0.92866 0.94052 1.23839 0.99265 0.98599 0.98086 1.22105 0.96888 0.89680 0.87349 1.45998 1.10138 1.60317 1.16206 1.18944 0.97857 1.23845 0.94490 0.90443 1.24792 0.98198 1.00823 0.96554 1.69829 1.21635 1.49165 1.16036 0.86238 0.79942 0.80276 0.79529 1.21082 1.21616 1.21268 1.84270 1.16193 1.34024 1.70761 0.90328 0.89383 0.89440 0.82947 0.82318 0.92409 0.90372 0.90592 0.88711 0.91063 0.93995 0.89437 0.91571 0.95714 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.41 36.00 0.37 -0.02 16 2 C 0.00 0.03 7.31 -35.41 -0.26 -0.23 16 3 C -0.22 -2.20 10.77 -39.88 -0.43 -2.63 16 4 C -0.12 -1.56 10.63 -39.39 -0.42 -1.98 16 5 C -0.07 -0.97 6.77 -36.80 -0.25 -1.22 16 6 C 0.60 10.12 7.29 -12.86 -0.09 10.03 16 7 O -0.51 -10.35 14.63 5.19 0.08 -10.28 16 8 N -0.60 -9.52 2.80 -183.13 -0.51 -10.03 16 9 C 0.08 0.90 9.71 59.85 0.58 1.48 16 10 C 0.12 2.18 5.42 -4.04 -0.02 2.16 16 11 C 0.13 2.73 4.58 -66.74 -0.31 2.43 16 12 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 13 C -0.16 -3.46 7.24 -25.79 -0.19 -3.65 16 14 C 0.16 4.20 7.38 -2.97 -0.02 4.18 16 15 N -0.60 -15.98 3.58 -169.73 -0.61 -16.59 16 16 C -0.22 -6.40 10.52 -15.06 -0.16 -6.56 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -28.24 11.52 55.49 0.64 -27.60 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 O -0.16 -1.85 7.27 4.99 0.04 -1.82 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.84 5.33 -51.93 -0.28 0.57 16 32 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 33 H 0.09 2.04 7.31 -51.93 -0.38 1.66 16 34 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.02 6.47 -51.93 -0.34 1.68 16 37 H 0.07 1.84 7.40 -51.93 -0.38 1.46 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -34.12 325.81 -7.32 -41.44 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.55 Total: -1.35 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.28 Total: 3.69 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.48 Total: -54.22 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.11 Total: -12.10 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.12 -7.32 -41.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085471656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.400 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds