Wall clock time and date at job start Tue Mar 31 2020 00:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35138 * 125.61671 * 2 1 4 4 C 1.40364 * 107.11497 * 179.77930 * 3 2 1 5 5 C 1.36548 * 106.70823 * 0.35392 * 4 3 2 6 6 C 1.46653 * 125.98719 * 179.91298 * 5 4 3 7 7 O 1.21697 * 120.00299 * 6.23817 * 6 5 4 8 8 N 1.34780 * 119.99895 * 186.24940 * 6 5 4 9 9 C 1.46504 * 119.99890 * 356.01433 * 8 6 5 10 10 C 1.46501 * 120.00027 * 176.02633 * 8 6 5 11 11 C 1.52993 * 109.47448 * 95.68429 * 10 8 6 12 12 H 1.08997 * 113.04300 * 65.72388 * 11 10 8 13 13 C 1.53947 * 113.76871 * 293.96904 * 11 10 8 14 14 C 1.53951 * 86.28902 * 222.09217 * 13 11 10 15 15 N 1.47581 * 86.24010 * 23.54864 * 14 13 11 16 16 C 1.36935 * 134.49078 * 155.41935 * 15 14 13 17 17 H 1.07996 * 120.00462 * 185.21592 * 16 15 14 18 18 C 1.38821 * 119.99775 * 5.21766 * 16 15 14 19 19 N 1.31609 * 120.00029 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99625 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46939 * 60.00666 * 20 18 16 22 22 H 1.48499 * 109.46891 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47134 * 300.00251 * 20 18 16 24 24 O 1.33931 * 125.61830 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47112 * 300.02695 * 1 2 3 27 27 H 1.08999 * 109.47137 * 60.02403 * 1 2 3 28 28 H 1.07994 * 126.43872 * 359.97438 * 3 2 1 29 29 H 1.07996 * 126.65004 * 180.21995 * 4 3 2 30 30 H 1.08998 * 109.47246 * 275.71908 * 9 8 6 31 31 H 1.08996 * 109.46700 * 35.72360 * 9 8 6 32 32 H 1.09004 * 109.46751 * 155.72037 * 9 8 6 33 33 H 1.08998 * 109.46854 * 335.68251 * 10 8 6 34 34 H 1.09005 * 109.46604 * 215.68779 * 10 8 6 35 35 H 1.09000 * 113.74529 * 107.75039 * 13 11 10 36 36 H 1.08996 * 113.84209 * 336.44642 * 13 11 10 37 37 H 1.08996 * 113.76835 * 137.91250 * 14 13 11 38 38 H 1.09003 * 113.76649 * 269.19179 * 14 13 11 39 39 H 0.97003 * 119.99962 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0052 5 6 3.5823 -0.7116 0.0000 6 6 4.7414 -1.6101 0.0009 7 8 5.8638 -1.1553 0.1211 8 7 4.5636 -2.9395 -0.1317 9 6 3.2093 -3.4953 -0.1889 10 6 5.7247 -3.8287 -0.2184 11 6 6.0395 -4.3931 1.1684 12 1 5.2560 -5.0473 1.5507 13 6 6.5088 -3.3307 2.1787 14 6 7.5581 -4.3644 2.6266 15 7 7.3983 -4.9628 1.2870 16 6 8.1910 -5.7342 0.4798 17 1 7.8650 -5.9822 -0.5195 18 6 9.4137 -6.1977 0.9460 19 7 9.8108 -5.8960 2.1640 20 14 10.4947 -7.2506 -0.1550 21 1 10.8437 -6.4887 -1.3809 22 1 11.7370 -7.6142 0.5728 23 1 9.7626 -8.4864 -0.5317 24 8 2.2869 -1.0887 0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5143 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 1.9612 2.1260 -0.0004 29 1 4.5113 1.2703 0.0099 30 1 2.8330 -3.6403 0.8238 31 1 2.5562 -2.8063 -0.7241 32 1 3.2314 -4.4531 -0.7088 33 1 6.5843 -3.2689 -0.5866 34 1 5.5044 -4.6481 -0.9028 35 1 5.7693 -3.0962 2.9444 36 1 6.9380 -2.4419 1.7162 37 1 8.5462 -3.9393 2.8029 38 1 7.2213 -5.0087 3.4386 39 1 10.6650 -6.2201 2.4899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085471656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:30 Heat of formation + Delta-G solvation = 24.172640 kcal Electronic energy + Delta-G solvation = -21783.036215 eV Core-core repulsion = 18501.040167 eV Total energy + Delta-G solvation = -3281.996048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.38 seconds Orbital eigenvalues (eV) -43.71345 -40.94884 -39.35852 -36.68462 -34.30303 -34.14538 -32.91730 -30.39004 -29.85031 -28.22127 -27.17985 -25.30702 -24.47523 -22.79323 -22.24280 -21.01013 -20.74327 -18.79421 -18.43663 -17.70267 -17.41103 -16.94614 -16.38774 -16.36137 -15.82545 -15.20470 -15.13856 -14.38403 -14.27580 -14.16178 -13.96487 -13.92454 -13.78568 -13.66908 -13.34312 -13.01287 -12.91896 -12.65014 -12.55500 -12.51012 -12.31136 -11.84290 -11.63287 -11.35532 -11.23499 -11.00476 -10.84540 -9.82861 -9.39084 -8.89981 -7.89079 -5.22554 0.03660 1.37800 1.44350 1.49296 1.52570 1.55354 2.04072 2.11447 2.49879 3.29064 3.38607 3.52061 3.85418 3.92062 3.96634 4.17451 4.27389 4.29216 4.43752 4.55934 4.56885 4.64759 4.72135 4.76977 4.79967 4.81567 4.95099 4.97512 5.02098 5.05156 5.18006 5.21078 5.41794 5.50889 5.52960 5.70763 5.90777 5.93661 6.29581 6.91435 6.97265 7.61759 8.58605 9.29020 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038775 B = 0.003753 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.945593 B = 7458.557481 C = 7580.279593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.020 3.980 3 C -0.231 4.231 4 C -0.124 4.124 5 C -0.103 4.103 6 C 0.591 3.409 7 O -0.558 6.558 8 N -0.598 5.598 9 C 0.073 3.927 10 C 0.130 3.870 11 C 0.135 3.865 12 H 0.061 0.939 13 C -0.136 4.136 14 C 0.161 3.839 15 N -0.628 5.628 16 C -0.231 4.231 17 H 0.089 0.911 18 C -0.072 4.072 19 N -0.958 5.958 20 Si 0.981 3.019 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.273 1.273 24 O -0.158 6.158 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.182 0.818 29 H 0.155 0.845 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.021 0.979 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.971 11.839 -5.539 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.033 4.033 3 C -0.250 4.250 4 C -0.145 4.145 5 C -0.154 4.154 6 C 0.380 3.620 7 O -0.439 6.439 8 N -0.328 5.328 9 C -0.068 4.068 10 C 0.006 3.994 11 C 0.028 3.972 12 H 0.078 0.922 13 C -0.175 4.175 14 C 0.036 3.964 15 N -0.354 5.354 16 C -0.359 4.359 17 H 0.107 0.893 18 C -0.265 4.265 19 N -0.607 5.607 20 Si 0.808 3.192 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.198 1.198 24 O -0.055 6.055 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.199 0.801 29 H 0.172 0.828 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.215 11.526 -5.574 26.512 hybrid contribution 1.397 -0.607 -0.081 1.525 sum -21.819 10.919 -5.654 25.045 Atomic orbital electron populations 1.20658 0.81285 1.05609 1.05736 1.23818 0.96080 0.83840 0.99530 1.21876 0.90948 1.01407 1.10739 1.22181 1.00006 0.92702 0.99568 1.21633 0.82098 0.94419 1.17236 1.17022 0.86344 0.81838 0.76762 1.90869 1.24345 1.76493 1.52153 1.47729 1.08769 1.05326 1.71019 1.22227 0.80498 1.00770 1.03319 1.21521 0.87671 0.92744 0.97434 1.22695 0.87915 0.92184 0.94377 0.92151 1.23557 0.98297 0.97116 0.98483 1.22018 0.96230 0.90798 0.87400 1.46322 1.12443 1.60322 1.16360 1.19416 0.98279 1.22972 0.95275 0.89313 1.25703 0.99884 1.02743 0.98124 1.70036 1.21822 1.50802 1.18023 0.85123 0.77649 0.78801 0.77595 1.20311 1.22274 1.19834 1.84237 1.15297 1.34989 1.70976 0.89431 0.87406 0.87230 0.80067 0.82769 0.91546 0.89048 0.88819 0.92067 0.89180 0.91326 0.91125 0.95103 0.96132 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.41 71.23 0.74 0.31 16 2 C 0.02 0.31 7.31 24.97 0.18 0.49 16 3 C -0.23 -3.94 10.77 22.07 0.24 -3.70 16 4 C -0.12 -3.02 10.63 22.39 0.24 -2.79 16 5 C -0.10 -2.83 6.77 24.07 0.16 -2.66 16 6 C 0.59 20.25 7.29 86.44 0.63 20.88 16 7 O -0.56 -23.67 14.63 -4.34 -0.06 -23.74 16 8 N -0.60 -18.47 2.80 -851.52 -2.38 -20.85 16 9 C 0.07 1.55 9.71 127.77 1.24 2.79 16 10 C 0.13 4.84 5.42 86.38 0.47 5.31 16 11 C 0.13 5.73 4.58 45.05 0.21 5.94 16 12 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.14 -5.98 7.24 31.25 0.23 -5.76 16 14 C 0.16 8.50 7.38 86.48 0.64 9.13 16 15 N -0.63 -33.98 3.58 -690.89 -2.48 -36.46 16 16 C -0.23 -13.37 10.52 84.04 0.88 -12.49 16 17 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 18 C -0.07 -4.27 5.50 84.87 0.47 -3.80 16 19 N -0.96 -60.79 11.52 21.65 0.25 -60.54 16 20 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 24 O -0.16 -3.38 7.27 -5.06 -0.04 -3.42 16 25 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 29 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.73 5.33 -2.39 -0.01 1.71 16 32 H 0.09 1.66 7.89 -2.38 -0.02 1.64 16 33 H 0.06 2.71 7.31 -2.39 -0.02 2.69 16 34 H 0.09 2.99 7.95 -2.38 -0.02 2.97 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.07 3.38 6.47 -2.39 -0.02 3.36 16 37 H 0.03 1.81 7.40 -2.39 -0.02 1.80 16 38 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -77.11 325.81 4.68 -72.43 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.04 Total: 9.65 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.32 Total: 13.65 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -4.61 Total: -117.85 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.10 Total: -27.15 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -77.11 4.68 -72.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085471656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.600 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds