Wall clock time and date at job start Tue Mar 31 2020 01:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40367 * 126.64550 * 2 1 4 4 C 1.35124 * 107.11361 * 180.02562 * 3 2 1 5 5 O 1.33928 * 108.76901 * 359.75648 * 4 3 2 6 6 C 1.34915 * 109.38655 * 0.40276 * 5 4 3 7 7 C 1.46650 * 125.99014 * 179.86204 * 6 5 4 8 8 O 1.21697 * 120.00124 * 185.25580 * 7 6 5 9 9 N 1.34779 * 120.00108 * 5.26021 * 7 6 5 10 10 C 1.46498 * 120.00103 * 5.22363 * 9 7 6 11 11 C 1.46503 * 119.99974 * 184.94929 * 9 7 6 12 12 C 1.53004 * 109.47150 * 276.51272 * 11 9 7 13 13 H 1.09000 * 112.96657 * 49.95144 * 12 11 9 14 14 C 1.53944 * 113.76902 * 181.63383 * 12 11 9 15 15 C 1.53944 * 86.29187 * 137.90747 * 14 12 11 16 16 N 1.47583 * 113.76560 * 278.27456 * 12 11 9 17 17 C 1.36932 * 134.49487 * 41.06797 * 16 12 11 18 18 H 1.07996 * 120.00100 * 7.48907 * 17 16 12 19 19 C 1.38813 * 120.00144 * 187.48438 * 17 16 12 20 20 N 1.31624 * 119.99517 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00234 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46771 * 60.00311 * 21 19 17 23 23 H 1.48499 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46953 * 300.00466 * 21 19 17 25 25 H 1.08996 * 109.47182 * 269.97605 * 1 2 3 26 26 H 1.08997 * 109.47117 * 29.97527 * 1 2 3 27 27 H 1.09000 * 109.47136 * 149.97598 * 1 2 3 28 28 H 1.07998 * 126.44029 * 0.02562 * 3 2 1 29 29 H 1.08000 * 125.61874 * 180.02562 * 4 3 2 30 30 H 1.08992 * 109.47523 * 177.26101 * 10 9 7 31 31 H 1.08998 * 109.47146 * 297.26503 * 10 9 7 32 32 H 1.09005 * 109.46857 * 57.26114 * 10 9 7 33 33 H 1.09001 * 109.46982 * 36.50760 * 11 9 7 34 34 H 1.08991 * 109.47037 * 156.50928 * 11 9 7 35 35 H 1.09003 * 113.73658 * 252.25532 * 14 12 11 36 36 H 1.09002 * 113.74219 * 23.45009 * 14 12 11 37 37 H 1.08992 * 113.77039 * 90.69112 * 15 14 12 38 38 H 1.08996 * 113.76571 * 221.97907 * 15 14 12 39 39 H 0.97001 * 119.99417 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0006 5 8 3.6005 -0.6647 0.0045 6 6 2.3220 -1.0956 -0.0006 7 6 1.8843 -2.4952 -0.0004 8 8 0.7014 -2.7629 -0.1018 9 7 2.7920 -3.4852 0.1122 10 6 4.2014 -3.1632 0.3491 11 6 2.3682 -4.8834 0.0037 12 6 1.8441 -5.3641 1.3584 13 1 1.1108 -4.6864 1.7956 14 6 1.4071 -6.8402 1.3664 15 6 2.1047 -6.9355 2.7354 16 7 2.9075 -5.7748 2.2958 17 6 4.1411 -5.2795 2.6244 18 1 4.4610 -4.3246 2.2343 19 6 4.9804 -6.0047 3.4589 20 7 4.5906 -7.1687 3.9340 21 14 6.6635 -5.3294 3.9066 22 1 6.5053 -4.0265 4.6014 23 1 7.3589 -6.2876 4.8030 24 1 7.4645 -5.1374 2.6710 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 2.0306 2.1595 0.0004 29 1 4.5046 1.2916 -0.0003 30 1 4.7712 -4.0857 0.4595 31 1 4.5910 -2.5943 -0.4950 32 1 4.2905 -2.5700 1.2592 33 1 1.5775 -4.9665 -0.7420 34 1 3.2168 -5.4979 -0.2964 35 1 0.3268 -6.9777 1.4137 36 1 1.8783 -7.4415 0.5889 37 1 1.4487 -6.7197 3.5786 38 1 2.6844 -7.8486 2.8703 39 1 5.1770 -7.6753 4.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085485135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:45 Heat of formation + Delta-G solvation = 44.426182 kcal Electronic energy + Delta-G solvation = -22364.750263 eV Core-core repulsion = 19083.632474 eV Total energy + Delta-G solvation = -3281.117789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.66765 -39.40924 -37.66707 -35.25871 -33.85947 -32.22137 -30.58394 -28.68803 -27.94094 -27.30118 -25.91814 -23.28830 -23.17676 -21.90730 -20.79806 -19.24349 -18.97384 -17.33999 -16.75725 -16.31115 -16.15451 -15.71818 -14.92280 -14.73824 -14.04562 -13.80517 -13.52219 -13.28377 -13.07757 -13.03208 -12.81112 -12.59485 -12.50694 -11.87539 -11.75423 -11.39393 -11.34972 -11.06509 -10.92338 -10.68138 -10.52108 -10.02304 -9.75225 -9.67522 -9.59632 -9.35302 -8.72492 -8.63238 -8.14441 -6.79218 -5.71954 -3.05026 1.17060 2.34713 2.80716 3.31157 3.37074 3.41228 3.43509 3.48588 4.45381 4.63134 4.78600 4.88331 5.19081 5.43123 5.44316 5.54396 5.61564 5.69494 5.75471 5.76460 5.80722 5.94284 6.00318 6.04835 6.11119 6.16653 6.27390 6.33260 6.43566 6.51647 6.64191 6.77226 6.90292 7.03197 7.32579 7.50586 7.65284 7.70002 8.04662 8.34233 9.07754 9.75720 10.69091 11.44040 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.006006 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.960299 B = 4661.130190 C = 5783.468396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.098 4.098 3 C -0.226 4.226 4 C -0.016 4.016 5 O -0.155 6.155 6 C -0.071 4.071 7 C 0.595 3.405 8 O -0.526 6.526 9 N -0.589 5.589 10 C 0.080 3.920 11 C 0.120 3.880 12 C 0.128 3.872 13 H 0.049 0.951 14 C -0.157 4.157 15 C 0.151 3.849 16 N -0.603 5.603 17 C -0.225 4.225 18 H 0.085 0.915 19 C -0.008 4.008 20 N -0.918 5.918 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.206 0.794 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.020 0.980 38 H 0.080 0.920 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 12.468 -9.601 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.245 4.245 4 C -0.086 4.086 5 O -0.050 6.050 6 C -0.123 4.123 7 C 0.383 3.617 8 O -0.406 6.406 9 N -0.319 5.319 10 C -0.062 4.062 11 C -0.003 4.003 12 C 0.020 3.980 13 H 0.066 0.934 14 C -0.196 4.196 15 C 0.026 3.974 16 N -0.329 5.329 17 C -0.352 4.352 18 H 0.102 0.898 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.210 1.210 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.170 0.830 29 H 0.223 0.777 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.306 12.052 -9.484 15.688 hybrid contribution 1.085 0.827 0.643 1.508 sum -2.220 12.879 -8.841 15.778 Atomic orbital electron populations 1.20405 0.88408 1.03424 1.02777 1.20598 0.97588 0.91005 1.00914 1.21681 0.92524 0.99920 1.10380 1.24345 0.99800 0.81321 1.03130 1.84287 1.28383 1.22069 1.70278 1.22022 0.81318 0.95077 1.13837 1.16607 0.85558 0.81834 0.77717 1.90798 1.15674 1.82166 1.51931 1.47687 1.08540 1.06605 1.69063 1.22078 0.80817 1.02862 1.00477 1.22027 1.00363 0.79149 0.98720 1.22625 0.90900 0.94417 0.90017 0.93359 1.23734 0.98489 0.96435 1.00912 1.22335 0.90531 0.93451 0.91091 1.46131 1.12984 1.29515 1.44292 1.19224 0.88949 1.01882 1.25176 0.89755 1.24792 0.98230 0.96854 1.00611 1.69807 1.36328 1.13416 1.37012 0.86350 0.84337 0.77876 0.78147 1.21342 1.21569 1.21027 0.91045 0.91823 0.89310 0.83034 0.77712 0.88291 0.92691 0.91947 0.90731 0.89488 0.93014 0.90705 0.96172 0.90210 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.88 36.01 0.36 -0.84 16 2 C -0.10 -1.39 6.20 -104.43 -0.65 -2.04 16 3 C -0.23 -2.55 10.83 -39.89 -0.43 -2.99 16 4 C -0.02 -0.17 12.08 29.62 0.36 0.19 16 5 O -0.16 -2.21 7.49 5.00 0.04 -2.17 16 6 C -0.07 -1.14 6.82 -36.80 -0.25 -1.39 16 7 C 0.60 10.93 7.58 -12.86 -0.10 10.83 16 8 O -0.53 -10.46 14.45 5.19 0.08 -10.39 16 9 N -0.59 -10.71 2.89 -183.14 -0.53 -11.24 16 10 C 0.08 1.35 7.27 59.85 0.44 1.78 16 11 C 0.12 2.22 5.16 -4.04 -0.02 2.20 16 12 C 0.13 2.72 4.48 -66.86 -0.30 2.42 16 13 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 14 C -0.16 -3.06 7.86 -25.80 -0.20 -3.26 16 15 C 0.15 3.62 7.72 -2.85 -0.02 3.60 16 16 N -0.60 -15.19 3.58 -169.72 -0.61 -15.80 16 17 C -0.22 -6.02 9.84 -15.06 -0.15 -6.16 16 18 H 0.08 2.11 4.26 -52.49 -0.22 1.89 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -26.99 11.29 55.49 0.63 -26.36 16 21 Si 0.90 21.65 29.55 -169.99 -5.02 16.62 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.28 6.35 -51.93 -0.33 0.95 16 28 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.10 1.78 6.27 -51.93 -0.33 1.45 16 31 H 0.05 0.79 7.06 -51.93 -0.37 0.43 16 32 H 0.06 1.10 7.14 -51.93 -0.37 0.73 16 33 H 0.07 1.28 7.70 -51.93 -0.40 0.88 16 34 H 0.09 1.60 7.81 -51.93 -0.41 1.19 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 2.09 6.87 -51.93 -0.36 1.73 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -32.06 318.47 -6.98 -39.04 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.29 Total: 1.48 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.07 Total: 4.01 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.51 Total: -53.40 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.11 Total: -12.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.06 -6.98 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085485135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.467 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds