Wall clock time and date at job start Tue Mar 31 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40367 * 126.64550 * 2 1 4 4 C 1.35124 * 107.11361 * 180.02562 * 3 2 1 5 5 O 1.33928 * 108.76901 * 359.75648 * 4 3 2 6 6 C 1.34915 * 109.38655 * 0.40276 * 5 4 3 7 7 C 1.46650 * 125.99014 * 179.86204 * 6 5 4 8 8 O 1.21697 * 120.00124 * 185.25580 * 7 6 5 9 9 N 1.34779 * 120.00108 * 5.26021 * 7 6 5 10 10 C 1.46498 * 120.00103 * 5.22363 * 9 7 6 11 11 C 1.46503 * 119.99974 * 184.94929 * 9 7 6 12 12 C 1.53004 * 109.47150 * 276.51272 * 11 9 7 13 13 H 1.09000 * 112.96657 * 49.95144 * 12 11 9 14 14 C 1.53944 * 113.76902 * 181.63383 * 12 11 9 15 15 C 1.53944 * 86.29187 * 137.90747 * 14 12 11 16 16 N 1.47583 * 113.76560 * 278.27456 * 12 11 9 17 17 C 1.36932 * 134.49487 * 41.06797 * 16 12 11 18 18 H 1.07996 * 120.00100 * 7.48907 * 17 16 12 19 19 C 1.38813 * 120.00144 * 187.48438 * 17 16 12 20 20 N 1.31624 * 119.99517 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00234 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46771 * 60.00311 * 21 19 17 23 23 H 1.48499 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46953 * 300.00466 * 21 19 17 25 25 H 1.08996 * 109.47182 * 269.97605 * 1 2 3 26 26 H 1.08997 * 109.47117 * 29.97527 * 1 2 3 27 27 H 1.09000 * 109.47136 * 149.97598 * 1 2 3 28 28 H 1.07998 * 126.44029 * 0.02562 * 3 2 1 29 29 H 1.08000 * 125.61874 * 180.02562 * 4 3 2 30 30 H 1.08992 * 109.47523 * 177.26101 * 10 9 7 31 31 H 1.08998 * 109.47146 * 297.26503 * 10 9 7 32 32 H 1.09005 * 109.46857 * 57.26114 * 10 9 7 33 33 H 1.09001 * 109.46982 * 36.50760 * 11 9 7 34 34 H 1.08991 * 109.47037 * 156.50928 * 11 9 7 35 35 H 1.09003 * 113.73658 * 252.25532 * 14 12 11 36 36 H 1.09002 * 113.74219 * 23.45009 * 14 12 11 37 37 H 1.08992 * 113.77039 * 90.69112 * 15 14 12 38 38 H 1.08996 * 113.76571 * 221.97907 * 15 14 12 39 39 H 0.97001 * 119.99417 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0006 5 8 3.6005 -0.6647 0.0045 6 6 2.3220 -1.0956 -0.0006 7 6 1.8843 -2.4952 -0.0004 8 8 0.7014 -2.7629 -0.1018 9 7 2.7920 -3.4852 0.1122 10 6 4.2014 -3.1632 0.3491 11 6 2.3682 -4.8834 0.0037 12 6 1.8441 -5.3641 1.3584 13 1 1.1108 -4.6864 1.7956 14 6 1.4071 -6.8402 1.3664 15 6 2.1047 -6.9355 2.7354 16 7 2.9075 -5.7748 2.2958 17 6 4.1411 -5.2795 2.6244 18 1 4.4610 -4.3246 2.2343 19 6 4.9804 -6.0047 3.4589 20 7 4.5906 -7.1687 3.9340 21 14 6.6635 -5.3294 3.9066 22 1 6.5053 -4.0265 4.6014 23 1 7.3589 -6.2876 4.8030 24 1 7.4645 -5.1374 2.6710 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 2.0306 2.1595 0.0004 29 1 4.5046 1.2916 -0.0003 30 1 4.7712 -4.0857 0.4595 31 1 4.5910 -2.5943 -0.4950 32 1 4.2905 -2.5700 1.2592 33 1 1.5775 -4.9665 -0.7420 34 1 3.2168 -5.4979 -0.2964 35 1 0.3268 -6.9777 1.4137 36 1 1.8783 -7.4415 0.5889 37 1 1.4487 -6.7197 3.5786 38 1 2.6844 -7.8486 2.8703 39 1 5.1770 -7.6753 4.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085485135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:44 Heat of formation + Delta-G solvation = 24.349673 kcal Electronic energy + Delta-G solvation = -22365.620845 eV Core-core repulsion = 19083.632474 eV Total energy + Delta-G solvation = -3281.988372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.66585 -40.85094 -39.37827 -36.64430 -34.92751 -34.25569 -31.66362 -30.21791 -29.65118 -28.60094 -27.27663 -25.23885 -24.65325 -23.04958 -21.95101 -20.88750 -20.34099 -18.87418 -18.31792 -17.49496 -17.44713 -16.93127 -16.75959 -16.24708 -15.77961 -15.18844 -14.99783 -14.76478 -14.34641 -14.18232 -14.00990 -13.88146 -13.57493 -13.45707 -13.09871 -12.99850 -12.89953 -12.75061 -12.66491 -12.48047 -12.29377 -11.75772 -11.48367 -11.26577 -11.08470 -10.75792 -10.63755 -9.82749 -9.45000 -8.82128 -7.81604 -5.16062 0.06723 1.43585 1.45521 1.48637 1.54050 1.71446 2.05425 2.23314 2.49937 3.34931 3.42469 3.58706 3.84076 3.94934 3.98366 4.22141 4.29161 4.38671 4.53088 4.55778 4.59805 4.64703 4.68640 4.76239 4.77007 4.89011 4.92782 5.00632 5.06363 5.13231 5.22841 5.35643 5.41863 5.54046 5.63621 5.74575 5.95030 6.01610 6.33337 6.97314 6.98844 7.69496 8.66918 9.34602 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.006006 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.960299 B = 4661.130190 C = 5783.468396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.098 4.098 3 C -0.233 4.233 4 C 0.005 3.995 5 O -0.168 6.168 6 C -0.116 4.116 7 C 0.590 3.410 8 O -0.553 6.553 9 N -0.598 5.598 10 C 0.089 3.911 11 C 0.129 3.871 12 C 0.130 3.870 13 H 0.029 0.971 14 C -0.129 4.129 15 C 0.141 3.859 16 N -0.625 5.625 17 C -0.224 4.224 18 H 0.099 0.901 19 C -0.071 4.071 20 N -0.955 5.955 21 Si 0.965 3.035 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.266 1.266 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.184 0.816 29 H 0.254 0.746 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.007 0.993 38 H 0.053 0.947 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 15.129 -11.022 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.251 4.251 4 C -0.065 4.065 5 O -0.064 6.064 6 C -0.167 4.167 7 C 0.380 3.620 8 O -0.435 6.435 9 N -0.327 5.327 10 C -0.053 4.053 11 C 0.006 3.994 12 C 0.023 3.977 13 H 0.047 0.953 14 C -0.168 4.168 15 C 0.016 3.984 16 N -0.351 5.351 17 C -0.353 4.353 18 H 0.116 0.884 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.793 3.207 22 H -0.210 1.210 23 H -0.226 1.226 24 H -0.191 1.191 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.202 0.798 29 H 0.269 0.731 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.622 14.739 -10.937 18.540 hybrid contribution 0.811 0.151 1.080 1.359 sum -1.810 14.890 -9.858 17.949 Atomic orbital electron populations 1.20423 0.87967 1.03810 1.02794 1.21023 0.98294 0.91684 0.99088 1.22065 0.92137 1.00599 1.10347 1.25380 1.01495 0.80122 0.99478 1.84245 1.27458 1.23921 1.70730 1.21671 0.82645 0.94312 1.18108 1.16943 0.85248 0.82899 0.76926 1.90764 1.16587 1.82971 1.53170 1.47770 1.09119 1.06448 1.69383 1.21986 0.80077 1.02186 1.01059 1.21844 1.00771 0.79720 0.97109 1.22658 0.89372 0.95213 0.90471 0.95326 1.23532 0.99971 0.95139 0.98132 1.22302 0.90610 0.92199 0.93279 1.46518 1.13346 1.29995 1.45237 1.19727 0.89541 1.02085 1.23913 0.88391 1.25604 1.01889 0.97416 1.01434 1.70018 1.37356 1.14875 1.38197 0.85348 0.80331 0.76829 0.78147 1.20968 1.22633 1.19124 0.91122 0.88853 0.91478 0.79835 0.73060 0.89671 0.90160 0.93050 0.89237 0.89305 0.90137 0.89133 0.97498 0.92859 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 9.88 71.24 0.70 -1.56 16 2 C -0.10 -2.60 6.20 -19.74 -0.12 -2.72 16 3 C -0.23 -4.40 10.83 22.07 0.24 -4.16 16 4 C 0.00 0.08 12.08 67.10 0.81 0.89 16 5 O -0.17 -4.39 7.49 -5.03 -0.04 -4.43 16 6 C -0.12 -3.63 6.82 24.07 0.16 -3.47 16 7 C 0.59 21.64 7.58 86.44 0.65 22.29 16 8 O -0.55 -22.27 14.45 -4.34 -0.06 -22.34 16 9 N -0.60 -21.50 2.89 -851.54 -2.46 -23.96 16 10 C 0.09 2.92 7.27 127.77 0.93 3.85 16 11 C 0.13 4.68 5.16 86.38 0.45 5.12 16 12 C 0.13 5.50 4.48 45.09 0.20 5.70 16 13 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 14 C -0.13 -4.94 7.86 31.25 0.25 -4.69 16 15 C 0.14 6.95 7.72 86.43 0.67 7.62 16 16 N -0.62 -31.92 3.58 -690.88 -2.47 -34.39 16 17 C -0.22 -12.12 9.84 84.03 0.83 -11.29 16 18 H 0.10 4.89 4.26 -2.91 -0.01 4.88 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.95 -57.78 11.29 21.65 0.24 -57.53 16 21 Si 0.96 44.84 29.55 68.60 2.03 46.86 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.93 6.35 -2.39 -0.02 1.92 16 28 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.25 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.08 3.00 6.27 -2.39 -0.01 2.98 16 31 H 0.08 2.19 7.06 -2.39 -0.02 2.17 16 32 H 0.05 1.77 7.14 -2.38 -0.02 1.76 16 33 H 0.09 2.98 7.70 -2.39 -0.02 2.96 16 34 H 0.09 3.19 7.81 -2.39 -0.02 3.17 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 36 H 0.09 3.20 8.10 -2.39 -0.02 3.18 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 38 H 0.05 2.89 6.87 -2.39 -0.02 2.88 16 39 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -71.68 318.47 4.53 -67.15 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.06 Total: 14.58 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.23 Total: 14.05 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.69 Total: -115.88 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.10 Total: -26.76 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.68 4.53 -67.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085485135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.498 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds