Wall clock time and date at job start Tue Mar 31 2020 01:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40367 * 126.64408 * 2 1 4 4 C 1.35130 * 107.11198 * 179.97438 * 3 2 1 5 5 O 1.33927 * 108.76930 * 359.77331 * 4 3 2 6 6 C 1.34914 * 109.38370 * 0.37315 * 5 4 3 7 7 C 1.46653 * 125.98844 * 179.88601 * 6 5 4 8 8 O 1.21700 * 120.00402 * 186.95051 * 7 6 5 9 9 N 1.34783 * 120.00047 * 6.95337 * 7 6 5 10 10 C 1.46497 * 119.99619 * 354.88921 * 9 7 6 11 11 C 1.46496 * 120.00242 * 174.89301 * 9 7 6 12 12 C 1.53003 * 109.46878 * 262.08301 * 11 9 7 13 13 H 1.09001 * 112.96464 * 310.17908 * 12 11 9 14 14 C 1.53944 * 113.77029 * 178.49763 * 12 11 9 15 15 C 1.53942 * 86.29337 * 222.09146 * 14 12 11 16 16 N 1.47587 * 86.23933 * 23.55238 * 15 14 12 17 17 C 1.36931 * 134.49497 * 155.42951 * 16 15 14 18 18 H 1.07998 * 119.99983 * 175.47238 * 17 16 15 19 19 C 1.38814 * 119.99968 * 355.47691 * 17 16 15 20 20 N 1.31620 * 120.00000 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47400 * 89.99428 * 21 19 17 23 23 H 1.48498 * 109.46865 * 209.99667 * 21 19 17 24 24 H 1.48505 * 109.46865 * 329.99470 * 21 19 17 25 25 H 1.09000 * 109.47148 * 270.04164 * 1 2 3 26 26 H 1.08997 * 109.47264 * 30.04019 * 1 2 3 27 27 H 1.09000 * 109.46870 * 150.04579 * 1 2 3 28 28 H 1.07997 * 126.44259 * 359.96784 * 3 2 1 29 29 H 1.07994 * 125.61016 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47185 * 275.93778 * 10 9 7 31 31 H 1.08999 * 109.47646 * 35.94225 * 10 9 7 32 32 H 1.09003 * 109.47249 * 155.94541 * 10 9 7 33 33 H 1.08997 * 109.47244 * 142.08242 * 11 9 7 34 34 H 1.08999 * 109.47414 * 22.08093 * 11 9 7 35 35 H 1.08998 * 113.73966 * 107.74423 * 14 12 11 36 36 H 1.08998 * 113.74019 * 336.43768 * 14 12 11 37 37 H 1.09005 * 113.77242 * 137.90491 * 15 14 12 38 38 H 1.08995 * 113.77214 * 269.19952 * 15 14 12 39 39 H 0.96998 * 119.99568 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0059 6 6 2.3220 -1.0955 0.0006 7 6 1.8843 -2.4952 0.0015 8 8 0.7048 -2.7640 -0.1312 9 7 2.7883 -3.4839 0.1495 10 6 4.2180 -3.1680 0.1969 11 6 2.3411 -4.8744 0.2627 12 6 2.2961 -5.2770 1.7382 13 1 3.2143 -5.0348 2.2733 14 6 1.8015 -6.7156 1.9740 15 6 0.9895 -6.1376 3.1472 16 7 1.0674 -4.8458 2.4377 17 6 0.3067 -3.7073 2.4308 18 1 0.6255 -2.8482 1.8592 19 6 -0.8744 -3.6573 3.1585 20 7 -1.2632 -4.7044 3.8547 21 14 -1.9126 -2.1044 3.1485 22 1 -2.8925 -2.1712 2.0346 23 1 -2.6375 -1.9853 4.4390 24 1 -1.0331 -0.9222 2.9638 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8896 -0.5144 27 1 -0.3633 -0.8904 -0.5131 28 1 2.0306 2.1595 -0.0005 29 1 4.5045 1.2917 0.0003 30 1 4.6061 -3.0872 -0.8185 31 1 4.3641 -2.2220 0.7181 32 1 4.7477 -3.9601 0.7262 33 1 3.0355 -5.5239 -0.2701 34 1 1.3461 -4.9726 -0.1712 35 1 2.5876 -7.4049 2.2819 36 1 1.1853 -7.1061 1.1641 37 1 -0.0217 -6.5379 3.2211 38 1 1.5221 -6.1493 4.0981 39 1 -2.0883 -4.6693 4.3635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085485136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:49 Heat of formation + Delta-G solvation = 54.181735 kcal Electronic energy + Delta-G solvation = -22956.683852 eV Core-core repulsion = 19675.989096 eV Total energy + Delta-G solvation = -3280.694756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.54333 -39.28865 -37.52330 -35.24729 -33.69498 -31.96116 -30.45013 -28.53855 -27.67942 -27.34128 -25.89900 -23.17395 -23.09208 -21.75819 -20.69286 -19.06926 -18.95453 -17.20598 -16.79191 -16.29122 -15.90339 -15.64854 -14.96447 -14.52123 -13.81576 -13.74647 -13.47546 -13.22078 -13.09026 -12.80682 -12.67889 -12.48445 -12.37018 -11.71045 -11.51702 -11.46534 -11.28869 -10.95374 -10.78306 -10.56924 -10.38866 -9.90566 -9.58511 -9.57649 -9.44029 -9.11349 -8.60280 -8.36839 -8.06882 -6.66129 -5.53080 -2.83223 1.35367 2.51748 2.90537 3.43949 3.53125 3.58531 3.58754 3.69742 4.62256 4.75524 4.95953 5.03353 5.24880 5.38564 5.54557 5.62076 5.66184 5.69836 5.73141 5.77535 5.89160 5.97804 6.05108 6.07549 6.15802 6.26501 6.37915 6.40545 6.47249 6.69117 6.74866 6.80371 6.96025 7.10354 7.40891 7.55649 7.77063 7.84479 8.23573 8.61966 9.30856 9.95949 10.80398 11.64043 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.008819 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.727378 B = 3174.356700 C = 4622.810242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.093 4.093 3 C -0.221 4.221 4 C -0.028 4.028 5 O -0.160 6.160 6 C -0.070 4.070 7 C 0.592 3.408 8 O -0.478 6.478 9 N -0.605 5.605 10 C 0.079 3.921 11 C 0.116 3.884 12 C 0.123 3.877 13 H 0.042 0.958 14 C -0.158 4.158 15 C 0.153 3.847 16 N -0.597 5.597 17 C -0.195 4.195 18 H 0.091 0.909 19 C -0.016 4.016 20 N -0.930 5.930 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.281 1.281 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.204 0.796 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.021 0.979 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.420 6.081 -8.847 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.096 4.096 3 C -0.241 4.241 4 C -0.097 4.097 5 O -0.056 6.056 6 C -0.121 4.121 7 C 0.379 3.621 8 O -0.353 6.353 9 N -0.338 5.338 10 C -0.064 4.064 11 C -0.007 4.007 12 C 0.015 3.985 13 H 0.060 0.940 14 C -0.197 4.197 15 C 0.028 3.972 16 N -0.323 5.323 17 C -0.322 4.322 18 H 0.109 0.891 19 C -0.210 4.210 20 N -0.579 5.579 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.223 1.223 24 H -0.207 1.207 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.168 0.832 29 H 0.221 0.779 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.739 5.918 -8.832 15.838 hybrid contribution -0.377 1.269 0.343 1.367 sum 11.362 7.187 -8.489 15.900 Atomic orbital electron populations 1.20525 0.88418 1.03405 1.03442 1.20609 0.97650 0.91019 1.00315 1.21685 0.92575 0.99907 1.09892 1.24277 0.99617 0.81610 1.04183 1.84279 1.28531 1.21878 1.70938 1.22169 0.81045 0.95295 1.13622 1.16518 0.85687 0.81524 0.78352 1.90936 1.15413 1.81303 1.47666 1.47562 1.06282 1.07414 1.72557 1.21890 0.81032 1.02208 1.01313 1.21981 1.01388 0.79265 0.98061 1.22700 0.91734 0.92441 0.91672 0.94041 1.23778 0.99590 0.95006 1.01276 1.22255 0.98740 0.84910 0.91322 1.46092 1.24016 1.15004 1.47155 1.19400 0.99381 0.90601 1.22855 0.89107 1.24696 0.98085 0.97560 1.00684 1.69824 1.23917 1.28641 1.35550 0.86249 0.80714 0.83073 0.76533 1.21507 1.22321 1.20698 0.90574 0.91930 0.89062 0.83162 0.77915 0.93085 0.90359 0.90960 0.91419 0.88565 0.93178 0.90657 0.90418 0.96132 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.90 36.01 0.36 -1.43 16 2 C -0.09 -1.60 6.20 -104.43 -0.65 -2.25 16 3 C -0.22 -2.95 10.83 -39.89 -0.43 -3.38 16 4 C -0.03 -0.32 12.08 29.63 0.36 0.04 16 5 O -0.16 -2.34 7.25 5.01 0.04 -2.31 16 6 C -0.07 -1.26 6.78 -36.80 -0.25 -1.51 16 7 C 0.59 12.09 6.10 -12.86 -0.08 12.02 16 8 O -0.48 -11.39 11.58 5.19 0.06 -11.33 16 9 N -0.61 -10.83 2.88 -183.14 -0.53 -11.36 16 10 C 0.08 1.06 9.71 59.85 0.58 1.64 16 11 C 0.12 2.11 5.38 -4.04 -0.02 2.09 16 12 C 0.12 2.51 4.52 -66.73 -0.30 2.21 16 13 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.16 -3.00 7.86 -25.80 -0.20 -3.21 16 15 C 0.15 3.73 7.63 -2.97 -0.02 3.71 16 16 N -0.60 -15.71 3.58 -169.73 -0.61 -16.32 16 17 C -0.19 -5.70 9.54 -15.06 -0.14 -5.84 16 18 H 0.09 2.64 4.20 -52.49 -0.22 2.42 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -29.09 11.30 55.49 0.63 -28.46 16 21 Si 0.90 24.07 29.55 -169.99 -5.02 19.05 16 22 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.28 -7.21 6.53 56.52 0.37 -6.84 16 25 H 0.08 1.48 7.57 -51.93 -0.39 1.08 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.77 6.32 -51.93 -0.33 1.44 16 28 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.09 5.28 -51.93 -0.27 0.81 16 32 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.10 2.03 7.15 -51.93 -0.37 1.66 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 37 H 0.08 2.11 6.96 -51.93 -0.36 1.75 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -35.20 315.79 -6.91 -42.12 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.33 Total: 0.35 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.90 Total: 3.51 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.51 Total: -56.14 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.10 Total: -13.64 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.02 Total: 19.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.20 -6.91 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085485136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.298 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds