Wall clock time and date at job start Tue Mar 31 2020 01:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40367 * 126.64408 * 2 1 4 4 C 1.35130 * 107.11198 * 179.97438 * 3 2 1 5 5 O 1.33927 * 108.76930 * 359.77331 * 4 3 2 6 6 C 1.34914 * 109.38370 * 0.37315 * 5 4 3 7 7 C 1.46653 * 125.98844 * 179.88601 * 6 5 4 8 8 O 1.21700 * 120.00402 * 186.95051 * 7 6 5 9 9 N 1.34783 * 120.00047 * 6.95337 * 7 6 5 10 10 C 1.46497 * 119.99619 * 354.88921 * 9 7 6 11 11 C 1.46496 * 120.00242 * 174.89301 * 9 7 6 12 12 C 1.53003 * 109.46878 * 262.08301 * 11 9 7 13 13 H 1.09001 * 112.96464 * 310.17908 * 12 11 9 14 14 C 1.53944 * 113.77029 * 178.49763 * 12 11 9 15 15 C 1.53942 * 86.29337 * 222.09146 * 14 12 11 16 16 N 1.47587 * 86.23933 * 23.55238 * 15 14 12 17 17 C 1.36931 * 134.49497 * 155.42951 * 16 15 14 18 18 H 1.07998 * 119.99983 * 175.47238 * 17 16 15 19 19 C 1.38814 * 119.99968 * 355.47691 * 17 16 15 20 20 N 1.31620 * 120.00000 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47400 * 89.99428 * 21 19 17 23 23 H 1.48498 * 109.46865 * 209.99667 * 21 19 17 24 24 H 1.48505 * 109.46865 * 329.99470 * 21 19 17 25 25 H 1.09000 * 109.47148 * 270.04164 * 1 2 3 26 26 H 1.08997 * 109.47264 * 30.04019 * 1 2 3 27 27 H 1.09000 * 109.46870 * 150.04579 * 1 2 3 28 28 H 1.07997 * 126.44259 * 359.96784 * 3 2 1 29 29 H 1.07994 * 125.61016 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47185 * 275.93778 * 10 9 7 31 31 H 1.08999 * 109.47646 * 35.94225 * 10 9 7 32 32 H 1.09003 * 109.47249 * 155.94541 * 10 9 7 33 33 H 1.08997 * 109.47244 * 142.08242 * 11 9 7 34 34 H 1.08999 * 109.47414 * 22.08093 * 11 9 7 35 35 H 1.08998 * 113.73966 * 107.74423 * 14 12 11 36 36 H 1.08998 * 113.74019 * 336.43768 * 14 12 11 37 37 H 1.09005 * 113.77242 * 137.90491 * 15 14 12 38 38 H 1.08995 * 113.77214 * 269.19952 * 15 14 12 39 39 H 0.96998 * 119.99568 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0059 6 6 2.3220 -1.0955 0.0006 7 6 1.8843 -2.4952 0.0015 8 8 0.7048 -2.7640 -0.1312 9 7 2.7883 -3.4839 0.1495 10 6 4.2180 -3.1680 0.1969 11 6 2.3411 -4.8744 0.2627 12 6 2.2961 -5.2770 1.7382 13 1 3.2143 -5.0348 2.2733 14 6 1.8015 -6.7156 1.9740 15 6 0.9895 -6.1376 3.1472 16 7 1.0674 -4.8458 2.4377 17 6 0.3067 -3.7073 2.4308 18 1 0.6255 -2.8482 1.8592 19 6 -0.8744 -3.6573 3.1585 20 7 -1.2632 -4.7044 3.8547 21 14 -1.9126 -2.1044 3.1485 22 1 -2.8925 -2.1712 2.0346 23 1 -2.6375 -1.9853 4.4390 24 1 -1.0331 -0.9222 2.9638 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8896 -0.5144 27 1 -0.3633 -0.8904 -0.5131 28 1 2.0306 2.1595 -0.0005 29 1 4.5045 1.2917 0.0003 30 1 4.6061 -3.0872 -0.8185 31 1 4.3641 -2.2220 0.7181 32 1 4.7477 -3.9601 0.7262 33 1 3.0355 -5.5239 -0.2701 34 1 1.3461 -4.9726 -0.1712 35 1 2.5876 -7.4049 2.2819 36 1 1.1853 -7.1061 1.1641 37 1 -0.0217 -6.5379 3.2211 38 1 1.5221 -6.1493 4.0981 39 1 -2.0883 -4.6693 4.3635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085485136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:49 Heat of formation + Delta-G solvation = 30.021407 kcal Electronic energy + Delta-G solvation = -22957.731522 eV Core-core repulsion = 19675.989096 eV Total energy + Delta-G solvation = -3281.742427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.67092 -40.79587 -39.25861 -36.66467 -34.94125 -34.12337 -31.65870 -30.01809 -29.67572 -28.63323 -27.19992 -25.21889 -24.60973 -22.96266 -21.97953 -20.79120 -20.35344 -18.78220 -18.44317 -17.56097 -17.24737 -16.97518 -16.75284 -16.16073 -15.74738 -15.26883 -14.96564 -14.60892 -14.38543 -14.32559 -14.08879 -13.82706 -13.59927 -13.33448 -13.11853 -12.94066 -12.82656 -12.75687 -12.60646 -12.39121 -12.25369 -11.76364 -11.43584 -11.26038 -10.96915 -10.72936 -10.64080 -9.72479 -9.39971 -8.75401 -7.79486 -5.08088 0.12530 1.33322 1.39368 1.44023 1.45781 1.70914 2.15244 2.32648 2.51327 3.37442 3.44843 3.69533 3.81683 3.94718 3.99231 4.28094 4.33962 4.39823 4.49712 4.55622 4.59424 4.64490 4.66337 4.74600 4.79070 4.93488 4.96085 5.08398 5.10860 5.14119 5.24271 5.42933 5.44205 5.62058 5.73300 5.79750 5.94679 6.07826 6.42840 7.06899 7.18931 7.75302 8.66904 9.37493 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.008819 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.727378 B = 3174.356700 C = 4622.810242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.110 4.110 3 C -0.235 4.235 4 C 0.006 3.994 5 O -0.157 6.157 6 C -0.106 4.106 7 C 0.581 3.419 8 O -0.533 6.533 9 N -0.607 5.607 10 C 0.075 3.925 11 C 0.122 3.878 12 C 0.125 3.875 13 H 0.059 0.941 14 C -0.125 4.125 15 C 0.141 3.859 16 N -0.630 5.630 17 C -0.180 4.180 18 H 0.090 0.910 19 C -0.083 4.083 20 N -0.962 5.962 21 Si 0.949 3.051 22 H -0.294 1.294 23 H -0.297 1.297 24 H -0.270 1.270 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.180 0.820 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.017 0.983 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.226 7.395 -10.077 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.254 4.254 4 C -0.063 4.063 5 O -0.052 6.052 6 C -0.158 4.158 7 C 0.370 3.630 8 O -0.412 6.412 9 N -0.339 5.339 10 C -0.066 4.066 11 C -0.002 4.002 12 C 0.018 3.982 13 H 0.077 0.923 14 C -0.164 4.164 15 C 0.015 3.985 16 N -0.356 5.356 17 C -0.309 4.309 18 H 0.107 0.893 19 C -0.274 4.274 20 N -0.615 5.615 21 Si 0.781 3.219 22 H -0.222 1.222 23 H -0.224 1.224 24 H -0.196 1.196 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.197 0.803 29 H 0.277 0.723 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 15.631 7.227 -10.084 19.956 hybrid contribution -1.375 0.932 0.647 1.783 sum 14.256 8.158 -9.437 18.943 Atomic orbital electron populations 1.20431 0.89660 1.03671 1.01803 1.20907 0.97462 0.92749 1.00186 1.22025 0.92543 1.00217 1.10607 1.25411 1.00997 0.80462 0.99407 1.84273 1.26632 1.23534 1.70811 1.21754 0.82606 0.94395 1.17002 1.16982 0.85469 0.82994 0.77538 1.90896 1.17551 1.82435 1.50317 1.47743 1.07912 1.06782 1.71424 1.22146 0.78379 1.02899 1.03199 1.21850 1.01089 0.80639 0.96581 1.22955 0.89977 0.92718 0.92546 0.92314 1.23510 0.99422 0.95078 0.98371 1.22264 0.97781 0.85175 0.93252 1.46509 1.26120 1.14596 1.48352 1.19672 0.99220 0.91467 1.20556 0.89283 1.25362 0.99836 1.00062 1.02100 1.69995 1.24146 1.30085 1.37273 0.85475 0.79442 0.81095 0.75928 1.22222 1.22373 1.19565 0.93091 0.88649 0.91834 0.80283 0.72271 0.90665 0.90656 0.88679 0.86379 0.92227 0.88532 0.90329 0.94180 0.96568 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.57 9.90 71.24 0.71 -2.86 16 2 C -0.11 -3.70 6.20 -19.74 -0.12 -3.82 16 3 C -0.24 -5.47 10.83 22.07 0.24 -5.23 16 4 C 0.01 0.11 12.08 67.10 0.81 0.92 16 5 O -0.16 -4.08 7.25 -5.00 -0.04 -4.12 16 6 C -0.11 -3.74 6.78 24.07 0.16 -3.58 16 7 C 0.58 23.95 6.10 86.44 0.53 24.47 16 8 O -0.53 -26.61 11.58 -4.35 -0.05 -26.66 16 9 N -0.61 -20.79 2.88 -851.53 -2.45 -23.24 16 10 C 0.08 1.76 9.71 127.77 1.24 3.00 16 11 C 0.12 4.20 5.38 86.38 0.46 4.67 16 12 C 0.12 4.86 4.52 45.05 0.20 5.06 16 13 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 14 C -0.13 -4.50 7.86 31.25 0.25 -4.25 16 15 C 0.14 6.95 7.63 86.48 0.66 7.61 16 16 N -0.63 -33.60 3.58 -690.91 -2.48 -36.08 16 17 C -0.18 -10.88 9.54 84.04 0.80 -10.08 16 18 H 0.09 5.38 4.20 -2.91 -0.01 5.36 16 19 C -0.08 -5.25 5.50 84.86 0.47 -4.78 16 20 N -0.96 -63.14 11.30 21.65 0.24 -62.90 16 21 Si 0.95 51.85 29.55 68.60 2.03 53.87 16 22 H -0.29 -16.14 7.11 99.48 0.71 -15.44 16 23 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 24 H -0.27 -14.02 6.53 99.48 0.65 -13.38 16 25 H 0.05 2.05 7.57 -2.39 -0.02 2.03 16 26 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.06 2.62 6.32 -2.39 -0.02 2.61 16 28 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.26 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.84 5.28 -2.39 -0.01 1.83 16 32 H 0.09 1.78 8.03 -2.39 -0.02 1.77 16 33 H 0.12 2.89 8.13 -2.39 -0.02 2.87 16 34 H 0.06 2.54 7.15 -2.39 -0.02 2.52 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 37 H 0.04 2.27 6.96 -2.38 -0.02 2.25 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -83.99 315.79 4.66 -79.33 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.00 Total: 8.67 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.41 Total: 11.13 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -4.68 Total: -122.22 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.09 Total: -30.78 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.03 Total: 53.87 kcal Total: -83.99 4.66 -79.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085485136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.349 kcal (2) G-P(sol) polarization free energy of solvation -83.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds