Wall clock time and date at job start Tue Mar 31 2020 00:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34171 * 125.43921 * 2 1 4 4 C 1.47024 * 105.95685 * 179.97438 * 3 2 1 5 5 C 1.47380 * 127.19641 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99680 * 346.48293 * 5 4 3 7 7 N 1.34772 * 120.00126 * 166.48184 * 5 4 3 8 8 C 1.46507 * 120.00037 * 2.63282 * 7 5 4 9 9 C 1.46496 * 119.99994 * 182.63175 * 7 5 4 10 10 C 1.52998 * 109.47214 * 97.04852 * 9 7 5 11 11 H 1.09003 * 112.96263 * 54.07632 * 10 9 7 12 12 C 1.53943 * 113.76924 * 185.75561 * 10 9 7 13 13 C 1.53952 * 86.28842 * 137.91131 * 12 10 9 14 14 N 1.47578 * 113.76882 * 282.25415 * 10 9 7 15 15 C 1.36931 * 134.49760 * 41.05503 * 14 10 9 16 16 H 1.08001 * 119.99446 * 14.20194 * 15 14 10 17 17 C 1.38810 * 120.00092 * 194.20508 * 15 14 10 18 18 N 1.31607 * 120.00424 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99734 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46909 * 119.99800 * 19 17 15 22 22 H 1.48503 * 109.46816 * 240.00023 * 19 17 15 23 23 C 1.36421 * 105.61295 * 359.97438 * 4 3 2 24 24 O 1.33655 * 108.39417 * 0.02562 * 23 4 3 25 25 H 1.09005 * 109.46805 * 90.00244 * 1 2 3 26 26 H 1.08999 * 109.47769 * 210.00251 * 1 2 3 27 27 H 1.08999 * 109.47371 * 330.00843 * 1 2 3 28 28 H 1.08004 * 127.02208 * 359.72972 * 3 2 1 29 29 H 1.09007 * 109.46796 * 83.86937 * 8 7 5 30 30 H 1.08997 * 109.47366 * 203.86894 * 8 7 5 31 31 H 1.08997 * 109.47240 * 323.87792 * 8 7 5 32 32 H 1.09004 * 109.47211 * 217.04711 * 9 7 5 33 33 H 1.09000 * 109.47141 * 337.04545 * 9 7 5 34 34 H 1.09003 * 113.74042 * 252.24977 * 12 10 9 35 35 H 1.08998 * 113.74441 * 23.45431 * 12 10 9 36 36 H 1.08999 * 113.77247 * 90.69498 * 13 12 10 37 37 H 1.08999 * 113.76606 * 221.97753 * 13 12 10 38 38 H 0.96995 * 120.00703 * 180.02562 * 18 17 15 39 39 H 1.07998 * 125.80013 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4124 0.0003 6 8 4.8481 2.6019 -0.2467 7 7 6.0890 0.8345 0.2738 8 6 6.1626 -0.6088 0.5146 9 6 7.3050 1.6495 0.3303 10 6 7.6095 2.0111 1.7854 11 1 7.6654 1.1394 2.4375 12 6 8.7905 2.9849 1.9487 13 6 7.9280 3.6959 3.0074 14 7 6.7677 3.1008 2.3162 15 6 5.4424 3.4284 2.2102 16 1 4.7365 2.7058 1.8281 17 6 5.0062 4.6892 2.5936 18 7 5.8663 5.5696 3.0595 19 14 3.1983 5.1363 2.4482 20 1 2.4451 3.9801 1.8996 21 1 2.6649 5.4837 3.7898 22 1 3.0479 6.3008 1.5389 23 6 3.5790 -0.7583 0.0015 24 8 2.2851 -1.0935 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9595 2.1230 -0.0041 29 1 6.2252 -1.1334 -0.4389 30 1 7.0467 -0.8329 1.1114 31 1 5.2707 -0.9338 1.0501 32 1 8.1398 1.0860 -0.0864 33 1 7.1580 2.5619 -0.2477 34 1 9.6893 2.5206 2.3547 35 1 8.9873 3.5886 1.0628 36 1 8.0766 3.3201 4.0197 37 1 7.9670 4.7835 2.9475 38 1 5.5616 6.4505 3.3278 39 1 4.4103 -1.4477 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085564264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:07 Heat of formation + Delta-G solvation = 66.636583 kcal Electronic energy + Delta-G solvation = -22616.684453 eV Core-core repulsion = 19336.529779 eV Total energy + Delta-G solvation = -3280.154674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -42.39940 -39.27142 -37.45011 -35.00959 -32.90124 -32.13509 -31.78168 -28.65618 -27.68003 -26.56862 -26.28935 -23.37238 -23.14147 -21.52910 -20.68649 -19.07877 -18.91419 -16.85931 -16.76736 -16.26796 -15.94592 -15.51543 -14.98726 -14.54076 -14.06708 -13.74896 -13.50032 -13.17413 -13.05386 -12.99793 -12.79666 -12.58636 -12.49296 -11.94040 -11.48340 -11.44948 -11.31899 -10.92898 -10.73472 -10.55073 -10.36845 -9.83806 -9.57652 -9.50667 -9.29552 -9.14833 -8.48751 -8.38057 -8.02978 -6.57400 -5.50656 -2.83791 1.61508 2.29720 2.94709 3.41901 3.54304 3.60555 3.64026 3.94281 4.62849 4.67212 4.86749 4.99865 5.14143 5.26984 5.33795 5.38061 5.38730 5.55985 5.62974 5.66096 5.70703 5.76252 5.93224 5.96552 6.03518 6.06571 6.14137 6.42991 6.48743 6.56131 6.78305 6.82816 7.06666 7.16862 7.40470 7.64401 7.83176 7.93427 8.27927 8.88738 9.31126 9.98530 10.83713 11.65105 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.007828 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.519481 B = 3576.247677 C = 5061.739007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 C -0.158 4.158 4 C -0.210 4.210 5 C 0.571 3.429 6 O -0.485 6.485 7 N -0.610 5.610 8 C 0.062 3.938 9 C 0.119 3.881 10 C 0.122 3.878 11 H 0.041 0.959 12 C -0.154 4.154 13 C 0.142 3.858 14 N -0.594 5.594 15 C -0.185 4.185 16 H 0.082 0.918 17 C -0.011 4.011 18 N -0.927 5.927 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.292 1.292 23 C -0.021 4.021 24 O -0.180 6.180 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.156 0.844 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.247 0.753 39 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -15.672 -6.398 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.178 4.178 4 C -0.214 4.214 5 C 0.359 3.641 6 O -0.358 6.358 7 N -0.344 5.344 8 C -0.082 4.082 9 C -0.004 4.004 10 C 0.014 3.986 11 H 0.058 0.942 12 C -0.193 4.193 13 C 0.017 3.983 14 N -0.320 5.320 15 C -0.313 4.313 16 H 0.099 0.901 17 C -0.206 4.206 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.203 1.203 21 H -0.226 1.226 22 H -0.220 1.220 23 C -0.090 4.090 24 O -0.077 6.077 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.174 0.826 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.745 -15.070 -6.521 16.648 hybrid contribution -0.777 0.347 0.217 0.878 sum -3.522 -14.723 -6.304 16.399 Atomic orbital electron populations 1.20281 0.84996 1.04041 1.03352 1.22230 0.93997 0.83830 1.07369 1.22574 0.90310 0.99755 1.05117 1.21713 0.95138 0.93280 1.11313 1.17118 0.81790 0.86734 0.78504 1.90916 1.85421 1.13949 1.45510 1.47452 1.07892 1.07473 1.71611 1.22237 1.03492 0.82032 1.00416 1.21884 0.84152 0.95645 0.98714 1.22687 0.90704 0.92608 0.92648 0.94190 1.23741 0.95467 0.98921 1.01211 1.22415 0.83970 1.00223 0.91720 1.45913 1.05119 1.25807 1.55151 1.19162 0.81674 0.96097 1.34359 0.90072 1.24746 0.97450 0.95902 1.02491 1.69801 1.32237 1.05699 1.49828 0.86104 0.85527 0.78189 0.76502 1.20346 1.22601 1.21970 1.25537 0.83930 0.96147 1.03372 1.83699 1.16744 1.35462 1.71766 0.90240 0.90636 0.89323 0.82596 0.92838 0.90609 0.90575 0.91774 0.88850 0.93398 0.90686 0.96477 0.89715 0.94286 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.40 36.01 0.37 -0.31 16 2 C -0.03 -0.37 7.28 -35.74 -0.26 -0.63 16 3 C -0.16 -2.79 10.93 -37.46 -0.41 -3.20 16 4 C -0.21 -3.77 6.12 -103.27 -0.63 -4.41 16 5 C 0.57 11.92 5.73 -12.54 -0.07 11.85 16 6 O -0.48 -12.47 13.78 5.27 0.07 -12.39 16 7 N -0.61 -10.71 2.88 -182.86 -0.53 -11.23 16 8 C 0.06 0.72 8.81 59.85 0.53 1.25 16 9 C 0.12 2.19 5.35 -4.05 -0.02 2.17 16 10 C 0.12 2.51 4.53 -66.87 -0.30 2.21 16 11 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.15 -3.01 7.86 -25.80 -0.20 -3.21 16 13 C 0.14 3.49 7.90 -2.97 -0.02 3.47 16 14 N -0.59 -15.79 3.55 -170.74 -0.61 -16.39 16 15 C -0.19 -5.49 8.61 -15.06 -0.13 -5.62 16 16 H 0.08 2.42 4.77 -52.49 -0.25 2.17 16 17 C -0.01 -0.34 5.50 -17.44 -0.10 -0.43 16 18 N -0.93 -29.33 11.26 55.49 0.62 -28.70 16 19 Si 0.90 24.62 29.55 -169.99 -5.02 19.59 16 20 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 22 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 23 C -0.02 -0.29 10.00 30.08 0.30 0.01 16 24 O -0.18 -2.50 10.52 7.65 0.08 -2.42 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.16 2.91 8.06 -52.48 -0.42 2.49 16 29 H 0.05 0.47 7.68 -51.93 -0.40 0.08 16 30 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 31 H 0.08 0.86 4.84 -51.93 -0.25 0.60 16 32 H 0.06 0.92 8.12 -51.93 -0.42 0.49 16 33 H 0.09 2.04 7.19 -51.93 -0.37 1.66 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 2.34 6.65 -51.93 -0.35 1.99 16 38 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.23 2.13 4.62 -52.49 -0.24 1.88 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -37.49 317.09 -6.76 -44.25 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.21 Total: -0.62 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.95 Total: 3.14 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.51 Total: -56.33 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.15 Total: -14.82 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.02 Total: 19.59 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.49 -6.76 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085564264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.887 kcal (2) G-P(sol) polarization free energy of solvation -37.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds