Wall clock time and date at job start Tue Mar 31 2020 00:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34171 * 125.43921 * 2 1 4 4 C 1.47024 * 105.95685 * 179.97438 * 3 2 1 5 5 C 1.47380 * 127.19641 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99680 * 346.48293 * 5 4 3 7 7 N 1.34772 * 120.00126 * 166.48184 * 5 4 3 8 8 C 1.46507 * 120.00037 * 2.63282 * 7 5 4 9 9 C 1.46496 * 119.99994 * 182.63175 * 7 5 4 10 10 C 1.52998 * 109.47214 * 97.04852 * 9 7 5 11 11 H 1.09003 * 112.96263 * 54.07632 * 10 9 7 12 12 C 1.53943 * 113.76924 * 185.75561 * 10 9 7 13 13 C 1.53952 * 86.28842 * 137.91131 * 12 10 9 14 14 N 1.47578 * 113.76882 * 282.25415 * 10 9 7 15 15 C 1.36931 * 134.49760 * 41.05503 * 14 10 9 16 16 H 1.08001 * 119.99446 * 14.20194 * 15 14 10 17 17 C 1.38810 * 120.00092 * 194.20508 * 15 14 10 18 18 N 1.31607 * 120.00424 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99734 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46909 * 119.99800 * 19 17 15 22 22 H 1.48503 * 109.46816 * 240.00023 * 19 17 15 23 23 C 1.36421 * 105.61295 * 359.97438 * 4 3 2 24 24 O 1.33655 * 108.39417 * 0.02562 * 23 4 3 25 25 H 1.09005 * 109.46805 * 90.00244 * 1 2 3 26 26 H 1.08999 * 109.47769 * 210.00251 * 1 2 3 27 27 H 1.08999 * 109.47371 * 330.00843 * 1 2 3 28 28 H 1.08004 * 127.02208 * 359.72972 * 3 2 1 29 29 H 1.09007 * 109.46796 * 83.86937 * 8 7 5 30 30 H 1.08997 * 109.47366 * 203.86894 * 8 7 5 31 31 H 1.08997 * 109.47240 * 323.87792 * 8 7 5 32 32 H 1.09004 * 109.47211 * 217.04711 * 9 7 5 33 33 H 1.09000 * 109.47141 * 337.04545 * 9 7 5 34 34 H 1.09003 * 113.74042 * 252.24977 * 12 10 9 35 35 H 1.08998 * 113.74441 * 23.45431 * 12 10 9 36 36 H 1.08999 * 113.77247 * 90.69498 * 13 12 10 37 37 H 1.08999 * 113.76606 * 221.97753 * 13 12 10 38 38 H 0.96995 * 120.00703 * 180.02562 * 18 17 15 39 39 H 1.07998 * 125.80013 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4124 0.0003 6 8 4.8481 2.6019 -0.2467 7 7 6.0890 0.8345 0.2738 8 6 6.1626 -0.6088 0.5146 9 6 7.3050 1.6495 0.3303 10 6 7.6095 2.0111 1.7854 11 1 7.6654 1.1394 2.4375 12 6 8.7905 2.9849 1.9487 13 6 7.9280 3.6959 3.0074 14 7 6.7677 3.1008 2.3162 15 6 5.4424 3.4284 2.2102 16 1 4.7365 2.7058 1.8281 17 6 5.0062 4.6892 2.5936 18 7 5.8663 5.5696 3.0595 19 14 3.1983 5.1363 2.4482 20 1 2.4451 3.9801 1.8996 21 1 2.6649 5.4837 3.7898 22 1 3.0479 6.3008 1.5389 23 6 3.5790 -0.7583 0.0015 24 8 2.2851 -1.0935 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9595 2.1230 -0.0041 29 1 6.2252 -1.1334 -0.4389 30 1 7.0467 -0.8329 1.1114 31 1 5.2707 -0.9338 1.0501 32 1 8.1398 1.0860 -0.0864 33 1 7.1580 2.5619 -0.2477 34 1 9.6893 2.5206 2.3547 35 1 8.9873 3.5886 1.0628 36 1 8.0766 3.3201 4.0197 37 1 7.9670 4.7835 2.9475 38 1 5.5616 6.4505 3.3278 39 1 4.4103 -1.4477 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085564264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:03 Heat of formation + Delta-G solvation = 39.625817 kcal Electronic energy + Delta-G solvation = -22617.855728 eV Core-core repulsion = 19336.529779 eV Total energy + Delta-G solvation = -3281.325948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -43.57065 -40.79756 -39.20994 -36.48411 -34.19984 -34.02776 -33.08479 -30.07338 -29.67443 -27.85269 -27.35669 -25.22386 -24.86245 -22.98888 -21.89053 -20.77196 -20.36437 -18.77996 -18.06611 -17.54402 -17.19020 -17.02091 -16.72727 -16.27073 -15.75411 -15.29127 -15.08473 -14.66579 -14.19058 -14.08392 -13.98838 -13.90159 -13.78804 -13.41355 -13.12546 -12.99148 -12.83871 -12.59982 -12.51590 -12.35378 -12.30315 -11.74642 -11.42347 -11.35132 -10.88644 -10.81735 -10.58333 -9.53618 -9.49666 -8.67652 -7.79865 -5.11027 0.43384 1.02859 1.30023 1.35661 1.44965 1.83785 2.12055 2.50355 2.51351 3.39119 3.43526 3.63157 3.65377 3.93172 4.00889 4.23428 4.27487 4.35517 4.43274 4.48721 4.55893 4.67801 4.69029 4.73892 4.77981 4.82917 4.88123 4.95243 5.08346 5.08907 5.17916 5.34547 5.43035 5.64553 5.74534 5.84938 6.00215 6.12114 6.54526 7.05900 7.41853 7.74937 8.67575 9.35761 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.007828 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.519481 B = 3576.247677 C = 5061.739007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.003 4.003 3 C -0.210 4.210 4 C -0.258 4.258 5 C 0.563 3.437 6 O -0.557 6.557 7 N -0.609 5.609 8 C 0.048 3.952 9 C 0.123 3.877 10 C 0.124 3.876 11 H 0.066 0.934 12 C -0.125 4.125 13 C 0.129 3.871 14 N -0.628 5.628 15 C -0.164 4.164 16 H 0.076 0.924 17 C -0.080 4.080 18 N -0.959 5.959 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.292 1.292 22 H -0.302 1.302 23 C 0.021 3.979 24 O -0.171 6.171 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.020 0.980 37 H 0.045 0.955 38 H 0.239 0.761 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -20.318 -6.914 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.052 4.052 3 C -0.230 4.230 4 C -0.263 4.263 5 C 0.353 3.647 6 O -0.436 6.436 7 N -0.341 5.341 8 C -0.092 4.092 9 C 0.000 4.000 10 C 0.017 3.983 11 H 0.083 0.917 12 C -0.163 4.163 13 C 0.004 3.996 14 N -0.354 5.354 15 C -0.294 4.294 16 H 0.093 0.907 17 C -0.271 4.271 18 N -0.612 5.612 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.230 1.230 23 C -0.047 4.047 24 O -0.067 6.067 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -2.124 -19.818 -7.037 21.137 hybrid contribution -0.910 1.598 0.330 1.868 sum -3.033 -18.220 -6.707 19.651 Atomic orbital electron populations 1.20517 0.81787 1.05317 1.05151 1.22795 0.95558 0.82674 1.04186 1.22561 0.91660 0.99752 1.09039 1.21653 0.94082 0.95147 1.15404 1.17676 0.83450 0.86296 0.77289 1.90869 1.86555 1.16994 1.49196 1.47602 1.06515 1.09913 1.70107 1.22664 1.04969 0.78376 1.03227 1.21757 0.86248 0.95352 0.96643 1.22965 0.89179 0.92119 0.94008 0.91675 1.23469 0.96333 0.97478 0.99036 1.22433 0.85291 0.98490 0.93428 1.46325 1.04641 1.28217 1.56209 1.19323 0.83485 0.95529 1.31040 0.90681 1.25383 1.00474 0.96655 1.04543 1.69966 1.33146 1.05657 1.52400 0.85340 0.82614 0.77476 0.76268 1.19995 1.21989 1.23000 1.26251 0.84669 0.94862 0.98949 1.83769 1.16882 1.34981 1.71079 0.88067 0.88222 0.89139 0.85451 0.88766 0.88157 0.90002 0.86275 0.93259 0.88523 0.91032 0.96196 0.93682 0.95214 0.71328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.40 71.24 0.74 -0.48 16 2 C 0.00 -0.09 7.28 24.76 0.18 0.09 16 3 C -0.21 -7.62 10.93 23.65 0.26 -7.36 16 4 C -0.26 -9.16 6.12 -18.99 -0.12 -9.28 16 5 C 0.56 23.72 5.73 86.65 0.50 24.21 16 6 O -0.56 -30.30 13.78 -4.07 -0.06 -30.35 16 7 N -0.61 -19.96 2.88 -850.71 -2.45 -22.40 16 8 C 0.05 0.88 8.81 127.77 1.13 2.00 16 9 C 0.12 4.25 5.35 86.38 0.46 4.71 16 10 C 0.12 4.79 4.53 45.09 0.20 5.00 16 11 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 12 C -0.12 -4.55 7.86 31.25 0.25 -4.31 16 13 C 0.13 6.40 7.90 86.48 0.68 7.08 16 14 N -0.63 -33.72 3.55 -694.08 -2.46 -36.19 16 15 C -0.16 -10.09 8.61 84.03 0.72 -9.37 16 16 H 0.08 4.66 4.77 -2.91 -0.01 4.65 16 17 C -0.08 -5.14 5.50 84.86 0.47 -4.68 16 18 N -0.96 -63.90 11.26 21.65 0.24 -63.66 16 19 Si 0.95 53.46 29.55 68.60 2.03 55.49 16 20 H -0.27 -15.04 7.11 99.48 0.71 -14.33 16 21 H -0.29 -15.88 7.11 99.48 0.71 -15.17 16 22 H -0.30 -17.19 7.11 99.48 0.71 -16.49 16 23 C 0.02 0.50 10.00 67.40 0.67 1.18 16 24 O -0.17 -4.16 10.52 4.47 0.05 -4.12 16 25 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 29 H 0.09 1.03 7.68 -2.38 -0.02 1.01 16 30 H 0.10 1.41 8.03 -2.39 -0.02 1.39 16 31 H 0.08 1.41 4.84 -2.39 -0.01 1.39 16 32 H 0.12 2.80 8.12 -2.39 -0.02 2.78 16 33 H 0.05 2.17 7.19 -2.39 -0.02 2.15 16 34 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.07 2.68 8.10 -2.39 -0.02 2.66 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.04 2.59 6.65 -2.39 -0.02 2.58 16 38 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.27 3.51 4.62 -2.91 -0.01 3.50 16 Total: -1.00 -90.96 317.09 4.56 -86.40 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.06 Total: 6.03 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.14 Total: 8.80 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -4.67 Total: -122.25 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.01 Total: -34.47 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 2.03 Total: 55.49 kcal Total: -90.96 4.56 -86.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085564264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.025 kcal (2) G-P(sol) polarization free energy of solvation -90.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds